Wall clock time and date at job start Wed Apr 1 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38224 * 119.61702 * 2 1 4 4 C 1.38633 * 119.15744 * 179.75352 * 3 2 1 5 5 C 1.38671 * 118.41860 * 0.50454 * 4 3 2 6 6 C 1.50710 * 120.41466 * 179.78779 * 5 4 3 7 7 C 1.50703 * 109.46897 * 269.72318 * 6 5 4 8 8 O 1.21275 * 120.00111 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99612 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.55057 * 179.97438 * 9 7 6 11 11 C 1.53342 * 108.68473 * 125.63017 * 10 9 7 12 12 C 1.52110 * 109.44249 * 53.30481 * 11 10 9 13 13 C 1.54385 * 110.50739 * 64.08966 * 12 11 10 14 14 C 1.54457 * 102.87109 * 83.33374 * 13 12 11 15 15 N 1.47083 * 107.29725 * 21.50085 * 14 13 12 16 16 C 1.36935 * 125.62931 * 180.96847 * 15 14 13 17 17 H 1.08003 * 119.99937 * 168.95343 * 16 15 14 18 18 C 1.38811 * 119.99964 * 348.94815 * 16 15 14 19 19 N 1.31619 * 119.99929 * 165.65470 * 18 16 15 20 20 Si 1.86799 * 120.00069 * 345.65523 * 18 16 15 21 21 H 1.48500 * 109.47088 * 185.28736 * 20 18 16 22 22 H 1.48495 * 109.46844 * 305.28614 * 20 18 16 23 23 H 1.48497 * 109.46908 * 65.28631 * 20 18 16 24 24 C 1.47575 * 108.74515 * 1.23423 * 15 14 13 25 25 C 1.52103 * 111.59976 * 300.69054 * 12 11 10 26 26 C 1.46928 * 120.55101 * 359.97438 * 9 7 6 27 27 C 1.38175 * 119.16832 * 359.51412 * 5 4 3 28 28 N 1.31857 * 119.61770 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47246 * 269.97662 * 1 2 3 30 30 H 1.08998 * 109.47196 * 29.97587 * 1 2 3 31 31 H 1.08999 * 109.47320 * 149.98021 * 1 2 3 32 32 H 1.07997 * 120.42081 * 0.03802 * 3 2 1 33 33 H 1.08004 * 120.78611 * 180.27835 * 4 3 2 34 34 H 1.09003 * 109.46609 * 149.72414 * 6 5 4 35 35 H 1.08995 * 109.46867 * 29.72518 * 6 5 4 36 36 H 1.08999 * 109.60337 * 5.87416 * 10 9 7 37 37 H 1.09002 * 109.60479 * 245.38772 * 10 9 7 38 38 H 1.08999 * 109.47461 * 293.31423 * 11 10 9 39 39 H 1.08999 * 109.48299 * 173.29949 * 11 10 9 40 40 H 1.08995 * 110.73888 * 324.98680 * 13 12 11 41 41 H 1.09004 * 110.73381 * 201.67143 * 13 12 11 42 42 H 1.09003 * 109.87682 * 262.08138 * 14 13 12 43 43 H 1.09002 * 109.88538 * 140.92812 * 14 13 12 44 44 H 0.97002 * 120.00420 * 354.93210 * 19 18 16 45 45 H 1.09003 * 110.37719 * 95.25320 * 24 15 14 46 46 H 1.08995 * 110.38134 * 217.60924 * 24 15 14 47 47 H 1.08994 * 109.47603 * 179.28981 * 25 12 11 48 48 H 1.09001 * 109.48068 * 299.31611 * 25 12 11 49 49 H 1.08992 * 109.60702 * 354.12479 * 26 9 7 50 50 H 1.08995 * 109.60156 * 114.60997 * 26 9 7 51 51 H 1.07995 * 119.62154 * 180.24718 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1905 0.0052 5 6 4.2266 -0.0343 -0.0005 6 6 5.7323 -0.0988 0.0000 7 6 6.2346 -0.1202 -1.4207 8 8 5.4475 -0.0858 -2.3427 9 7 7.5585 -0.1774 -1.6665 10 6 8.0616 -0.1994 -3.0468 11 6 9.0750 0.9386 -3.2185 12 6 10.1398 0.8357 -2.1372 13 6 10.9490 -0.4693 -2.2973 14 6 12.0036 -0.0919 -3.3607 15 7 12.1243 1.3740 -3.3560 16 6 12.9437 2.1095 -4.1700 17 1 12.8348 3.1830 -4.2181 18 6 13.9143 1.4755 -4.9334 19 7 14.5068 2.1229 -5.9144 20 14 14.3797 -0.2964 -4.5685 21 1 15.5191 -0.6969 -5.4325 22 1 14.7724 -0.4212 -3.1419 23 1 13.2174 -1.1795 -4.8411 24 6 11.2214 1.9208 -2.3248 25 6 9.5336 0.9196 -0.7446 26 6 8.5227 -0.2189 -0.5586 27 6 3.4766 -1.1948 -0.0009 28 7 2.1587 -1.1463 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6508 2.1373 0.0006 33 1 4.1366 2.1139 0.0098 34 1 6.0569 -1.0037 0.5138 35 1 6.1332 0.7747 0.5141 36 1 7.2327 -0.0585 -3.7404 37 1 8.5479 -1.1548 -3.2437 38 1 8.5628 1.8971 -3.1342 39 1 9.5444 0.8624 -4.1992 40 1 10.3113 -1.2772 -2.6560 41 1 11.4292 -0.7433 -1.3579 42 1 11.6781 -0.4337 -4.3432 43 1 12.9630 -0.5435 -3.1081 44 1 14.2147 3.0169 -6.1517 45 1 11.7637 2.0845 -1.3935 46 1 10.7695 2.8506 -2.6702 47 1 10.3232 0.8298 0.0014 48 1 9.0280 1.8778 -0.6254 49 1 7.9979 -0.0909 0.3880 50 1 9.0445 -1.1758 -0.5636 51 1 3.9754 -2.1527 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035254666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:21 Heat of formation + Delta-G solvation = 29.357537 kcal Electronic energy + Delta-G solvation = -30225.181381 eV Core-core repulsion = 26318.063691 eV Total energy + Delta-G solvation = -3907.117690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.94918 -40.27557 -38.82855 -36.10551 -34.41794 -33.23325 -32.56224 -31.54067 -31.34034 -29.99921 -29.08847 -27.39680 -26.23091 -23.89633 -23.80887 -23.29109 -22.95438 -21.86912 -20.55026 -19.83846 -18.27913 -17.50089 -17.08211 -16.96030 -16.58150 -16.01131 -15.49740 -15.43513 -15.26785 -15.04717 -14.69315 -14.06230 -13.83523 -13.75803 -13.57689 -13.49173 -13.32939 -13.14512 -13.09646 -12.66517 -12.62636 -12.56039 -12.37182 -12.28763 -11.93498 -11.73982 -11.47673 -11.31935 -11.19450 -10.97928 -10.49060 -10.39317 -10.26976 -10.15353 -9.98503 -9.84170 -9.71714 -9.32050 -9.03093 -8.96157 -8.73302 -8.66211 -7.02453 -6.30861 -3.22219 0.79294 1.03351 2.45716 2.83358 3.40782 3.48156 3.50592 3.70751 3.99105 4.30757 4.39131 4.40336 4.57822 4.60475 4.62504 4.69155 4.71203 4.88101 4.94284 4.98014 5.05280 5.11036 5.19188 5.22271 5.23772 5.26122 5.30842 5.36212 5.47062 5.50144 5.60058 5.65842 5.68046 5.73588 5.78163 5.83819 5.88336 5.92927 5.95974 6.01180 6.21374 6.28532 6.31090 6.38576 6.42990 6.50380 6.62190 6.74057 6.76278 7.25949 7.67601 7.72931 8.01910 8.33605 9.04389 9.56232 10.23567 11.19756 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031865 B = 0.002106 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.503084 B =13293.316499 C =13403.568206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.170 4.170 4 C -0.058 4.058 5 C -0.122 4.122 6 C -0.097 4.097 7 C 0.515 3.485 8 O -0.537 6.537 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.111 4.111 12 C -0.072 4.072 13 C -0.123 4.123 14 C 0.112 3.888 15 N -0.611 5.611 16 C -0.320 4.320 17 H 0.077 0.923 18 C -0.023 4.023 19 N -0.930 5.930 20 Si 1.073 2.927 21 H -0.303 1.303 22 H -0.299 1.299 23 H -0.287 1.287 24 C 0.147 3.853 25 C -0.118 4.118 26 C 0.106 3.894 27 C 0.119 3.881 28 N -0.485 5.485 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.026 0.974 44 H 0.261 0.739 45 H 0.023 0.977 46 H 0.042 0.958 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.963 -5.220 17.435 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.190 4.190 4 C -0.084 4.084 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.302 3.698 8 O -0.414 6.414 9 N -0.341 5.341 10 C -0.011 4.011 11 C -0.149 4.149 12 C -0.073 4.073 13 C -0.161 4.161 14 C -0.013 4.013 15 N -0.339 5.339 16 C -0.447 4.447 17 H 0.094 0.906 18 C -0.222 4.222 19 N -0.571 5.571 20 Si 0.907 3.093 21 H -0.231 1.231 22 H -0.228 1.228 23 H -0.214 1.214 24 C 0.021 3.979 25 C -0.156 4.156 26 C -0.017 4.017 27 C -0.039 4.039 28 N -0.194 5.194 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.101 0.899 50 H 0.092 0.908 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.776 -7.124 16.419 28.966 hybrid contribution -0.179 2.159 0.519 2.227 sum -22.955 -4.965 16.937 28.956 Atomic orbital electron populations 1.20706 0.88901 1.03514 1.02957 1.21302 0.97039 0.88441 0.94728 1.21911 0.94716 0.99291 1.03108 1.21433 0.94455 0.97719 0.94777 1.20279 0.95207 0.94625 1.02316 1.20627 0.92191 1.05463 0.95467 1.20443 0.81922 0.76369 0.91019 1.90723 1.54798 1.49654 1.46235 1.48151 1.05266 1.72822 1.07856 1.21748 0.97826 0.99271 0.82225 1.21634 0.95177 0.97921 1.00174 1.21107 0.95103 0.97205 0.93869 1.22659 0.97350 0.96616 0.99434 1.21985 0.95826 0.86439 0.97037 1.44851 1.48344 1.00388 1.40317 1.20158 1.13014 0.92020 1.19497 0.90562 1.25854 0.94954 1.05851 0.95562 1.70890 1.44291 1.14552 1.27391 0.83797 0.75259 0.76018 0.74196 1.23137 1.22846 1.21444 1.21539 0.89760 0.94531 0.92065 1.21745 0.98230 0.98342 0.97305 1.21860 0.90899 0.99870 0.89024 1.22535 0.89241 0.97753 0.94340 1.67516 1.09715 1.29396 1.12780 0.90475 0.90735 0.90477 0.84822 0.84960 0.87620 0.87688 0.89171 0.91186 0.91914 0.89555 0.91312 0.91518 0.93843 0.95657 0.92910 0.95919 0.93967 0.90330 0.91502 0.89918 0.90810 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.17 36.01 0.37 -0.32 16 2 C 0.12 1.20 6.78 -82.59 -0.56 0.64 16 3 C -0.17 -1.50 9.74 -39.44 -0.38 -1.88 16 4 C -0.06 -0.53 9.86 -39.28 -0.39 -0.92 16 5 C -0.12 -1.17 4.39 -104.48 -0.46 -1.63 16 6 C -0.10 -0.74 4.20 -29.03 -0.12 -0.86 16 7 C 0.51 5.92 7.69 -10.98 -0.08 5.84 16 8 O -0.54 -8.47 15.44 5.56 0.09 -8.38 16 9 N -0.61 -6.58 2.96 -172.56 -0.51 -7.09 16 10 C 0.11 1.41 6.12 -3.63 -0.02 1.39 16 11 C -0.11 -1.60 4.87 -27.01 -0.13 -1.73 16 12 C -0.07 -1.03 0.55 -153.98 -0.08 -1.11 16 13 C -0.12 -1.85 4.91 -25.24 -0.12 -1.98 16 14 C 0.11 2.34 4.24 -2.96 -0.01 2.32 16 15 N -0.61 -14.48 3.31 -170.17 -0.56 -15.04 16 16 C -0.32 -9.06 10.56 -15.06 -0.16 -9.22 16 17 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 18 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 19 N -0.93 -29.29 13.70 55.49 0.76 -28.53 16 20 Si 1.07 26.84 24.53 -169.99 -4.17 22.67 16 21 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 22 H -0.30 -7.23 6.84 56.52 0.39 -6.85 16 23 H -0.29 -6.54 5.43 56.52 0.31 -6.23 16 24 C 0.15 2.77 6.16 -2.74 -0.02 2.75 16 25 C -0.12 -1.22 4.84 -26.99 -0.13 -1.35 16 26 C 0.11 0.88 6.07 -3.61 -0.02 0.86 16 27 C 0.12 1.24 10.86 -17.55 -0.19 1.05 16 28 N -0.48 -5.60 10.27 -9.48 -0.10 -5.69 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 34 H 0.11 0.56 7.88 -51.93 -0.41 0.15 16 35 H 0.10 0.59 7.65 -51.93 -0.40 0.20 16 36 H 0.09 1.27 6.99 -51.93 -0.36 0.90 16 37 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.47 7.82 -51.93 -0.41 1.07 16 40 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 41 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 42 H 0.04 0.96 6.79 -51.93 -0.35 0.61 16 43 H 0.03 0.58 3.81 -51.93 -0.20 0.38 16 44 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 45 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 46 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 47 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.08 0.45 5.91 -51.93 -0.31 0.14 16 50 H 0.07 0.58 7.62 -51.93 -0.40 0.19 16 51 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -35.87 388.01 -9.49 -45.36 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.22 Total: -2.22 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.62 Total: -6.93 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.41 Total: -56.35 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.17 Total: 22.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.87 -9.49 -45.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035254666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.715 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds