Wall clock time and date at job start Wed Apr 1 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38350 * 119.46316 * 2 1 4 4 C 1.38360 * 119.30118 * 179.76497 * 3 2 1 5 5 C 1.40021 * 118.28932 * 0.52652 * 4 3 2 6 6 C 1.47842 * 120.55783 * 179.73286 * 5 4 3 7 7 O 1.21548 * 120.00175 * 125.01119 * 6 5 4 8 8 N 1.34776 * 119.99955 * 305.00896 * 6 5 4 9 9 C 1.46936 * 120.55382 * 183.69153 * 8 6 5 10 10 C 1.53338 * 108.68424 * 125.63266 * 9 8 6 11 11 C 1.52101 * 109.44577 * 53.30299 * 10 9 8 12 12 C 1.54392 * 110.50726 * 64.09361 * 11 10 9 13 13 C 1.54454 * 102.87256 * 83.33008 * 12 11 10 14 14 N 1.47080 * 107.29650 * 21.50480 * 13 12 11 15 15 C 1.36938 * 125.62653 * 180.96456 * 14 13 12 16 16 H 1.07999 * 120.00025 * 179.71130 * 15 14 13 17 17 C 1.38812 * 119.99983 * 359.70908 * 15 14 13 18 18 N 1.31616 * 119.99878 * 160.51352 * 17 15 14 19 19 Si 1.86798 * 120.00090 * 340.51807 * 17 15 14 20 20 H 1.48503 * 109.47133 * 186.05023 * 19 17 15 21 21 H 1.48503 * 109.47104 * 306.04430 * 19 17 15 22 22 H 1.48493 * 109.47350 * 66.04644 * 19 17 15 23 23 C 1.47570 * 108.74202 * 1.23548 * 14 13 12 24 24 C 1.52096 * 111.60201 * 300.69523 * 11 10 9 25 25 C 1.46932 * 120.55502 * 3.67533 * 8 6 5 26 26 C 1.39522 * 118.88048 * 359.45952 * 5 4 3 27 27 C 1.50701 * 119.71597 * 180.27568 * 26 5 4 28 28 N 1.31686 * 120.56635 * 0.29428 * 26 5 4 29 29 H 1.09001 * 109.46869 * 269.97592 * 1 2 3 30 30 H 1.09008 * 109.47245 * 29.96890 * 1 2 3 31 31 H 1.09002 * 109.47531 * 149.97357 * 1 2 3 32 32 H 1.07995 * 120.35102 * 0.03404 * 3 2 1 33 33 H 1.08000 * 120.85557 * 180.25936 * 4 3 2 34 34 H 1.09002 * 109.60108 * 5.87399 * 9 8 6 35 35 H 1.09001 * 109.60395 * 245.39077 * 9 8 6 36 36 H 1.09009 * 109.47204 * 293.31262 * 10 9 8 37 37 H 1.09008 * 109.47548 * 173.30015 * 10 9 8 38 38 H 1.09002 * 110.73145 * 324.98521 * 12 11 10 39 39 H 1.09003 * 110.73606 * 201.68032 * 12 11 10 40 40 H 1.09004 * 109.87688 * 262.08148 * 13 12 11 41 41 H 1.08999 * 109.87982 * 140.93458 * 13 12 11 42 42 H 0.97004 * 119.99728 * 5.01103 * 18 17 15 43 43 H 1.08997 * 110.38009 * 95.25946 * 23 14 13 44 44 H 1.09005 * 110.37594 * 217.60902 * 23 14 13 45 45 H 1.09006 * 109.47827 * 179.29178 * 24 11 10 46 46 H 1.09000 * 109.47980 * 299.30907 * 24 11 10 47 47 H 1.09001 * 109.59528 * 354.12370 * 25 8 6 48 48 H 1.09000 * 109.60081 * 114.59920 * 25 8 6 49 49 H 1.08996 * 109.47166 * 94.74587 * 27 26 5 50 50 H 1.08998 * 109.47268 * 214.74777 * 27 26 5 51 51 H 1.09003 * 109.47142 * 334.74644 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2007 0.0049 5 6 4.2312 -0.0342 -0.0015 6 6 5.7083 -0.0968 -0.0026 7 8 6.2903 -0.7302 0.8561 8 7 6.4094 0.5484 -0.9558 9 6 7.8726 0.4288 -1.0166 10 6 8.2695 -0.0361 -2.4229 11 6 7.6500 0.8919 -3.4566 12 6 8.2215 2.3190 -3.3138 13 6 9.5423 2.2420 -4.1108 14 7 9.4260 1.1091 -5.0416 15 6 10.3943 0.6922 -5.9155 16 1 10.2129 -0.1573 -6.5573 17 6 11.6089 1.3614 -5.9766 18 7 12.6602 0.7702 -6.5035 19 14 11.7514 3.1009 -5.3109 20 1 13.0983 3.6421 -5.6243 21 1 10.7149 3.9582 -5.9403 22 1 11.5542 3.0855 -3.8392 23 6 8.0913 0.5001 -4.8828 24 6 6.1327 0.9126 -3.3526 25 6 5.7234 1.3829 -1.9517 26 6 3.4715 -1.2044 -0.0011 27 6 4.1625 -2.5436 -0.0017 28 7 2.1558 -1.1487 -0.0006 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6445 2.1381 0.0006 33 1 4.1276 2.1262 0.0093 34 1 8.2107 -0.3013 -0.2811 35 1 8.3277 1.3974 -0.8097 36 1 7.9096 -1.0523 -2.5847 37 1 9.3550 -0.0151 -2.5198 38 1 8.4155 2.5540 -2.2673 39 1 7.5460 3.0513 -3.7561 40 1 10.3772 2.0777 -3.4295 41 1 9.6929 3.1662 -4.6687 42 1 12.5699 -0.1038 -6.9145 43 1 7.3992 0.9045 -5.6214 44 1 8.1554 -0.5841 -4.9752 45 1 5.7266 1.5959 -4.0985 46 1 5.7427 -0.0901 -3.5277 47 1 4.6446 1.2818 -1.8327 48 1 6.0124 2.4252 -1.8169 49 1 4.2543 -2.9056 1.0223 50 1 3.5784 -3.2537 -0.5871 51 1 5.1548 -2.4403 -0.4409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035256647.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:25 Heat of formation + Delta-G solvation = 34.428675 kcal Electronic energy + Delta-G solvation = -31097.612876 eV Core-core repulsion = 27190.715087 eV Total energy + Delta-G solvation = -3906.897789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.32200 -40.09419 -38.70144 -36.13721 -34.03736 -33.65335 -32.93322 -31.34190 -31.09369 -29.45386 -29.08331 -27.95215 -26.87821 -24.05142 -23.66986 -23.15499 -22.71433 -22.28957 -20.63604 -20.13053 -18.48188 -17.65812 -17.18944 -16.91040 -16.34608 -15.82552 -15.40642 -15.33187 -15.23390 -14.81554 -14.62702 -13.94054 -13.84847 -13.71176 -13.59724 -13.54697 -13.34244 -13.18642 -13.00111 -12.73701 -12.61065 -12.42817 -12.33868 -12.25121 -12.19979 -11.83733 -11.51640 -11.29392 -11.19428 -10.96652 -10.51064 -10.40621 -10.35412 -10.26390 -10.04020 -9.83805 -9.67173 -9.46080 -9.14772 -8.95118 -8.72380 -8.59930 -7.02028 -6.30554 -3.16357 0.44846 0.82024 2.41667 2.77760 3.32574 3.38626 3.47797 3.69158 3.76172 4.15946 4.26544 4.32889 4.60398 4.62462 4.64726 4.72068 4.83266 4.94222 4.99887 5.07002 5.10584 5.15866 5.18519 5.22150 5.26282 5.31700 5.37041 5.42786 5.49946 5.53735 5.60772 5.61541 5.65556 5.74759 5.77420 5.80098 5.82955 5.89370 5.94116 6.01992 6.20450 6.25791 6.29554 6.31784 6.41438 6.49882 6.63213 6.74785 6.78700 7.18705 7.58564 7.67076 7.92800 8.34192 9.06770 9.59805 10.26147 11.20812 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.002643 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.734542 B =10592.289188 C =10809.570294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.148 3.852 3 C -0.184 4.184 4 C -0.039 4.039 5 C -0.183 4.183 6 C 0.566 3.434 7 O -0.532 6.532 8 N -0.598 5.598 9 C 0.111 3.889 10 C -0.112 4.112 11 C -0.072 4.072 12 C -0.122 4.122 13 C 0.102 3.898 14 N -0.611 5.611 15 C -0.323 4.323 16 H 0.077 0.923 17 C -0.026 4.026 18 N -0.928 5.928 19 Si 1.073 2.927 20 H -0.303 1.303 21 H -0.300 1.300 22 H -0.282 1.282 23 C 0.149 3.851 24 C -0.116 4.116 25 C 0.102 3.898 26 C 0.183 3.817 27 C -0.106 4.106 28 N -0.486 5.486 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.021 0.979 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.231 1.943 14.350 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.010 3.990 3 C -0.204 4.204 4 C -0.065 4.065 5 C -0.188 4.188 6 C 0.353 3.647 7 O -0.409 6.409 8 N -0.331 5.331 9 C -0.010 4.010 10 C -0.150 4.150 11 C -0.073 4.073 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.339 5.339 15 C -0.450 4.450 16 H 0.095 0.905 17 C -0.226 4.226 18 N -0.570 5.570 19 Si 0.907 3.093 20 H -0.231 1.231 21 H -0.229 1.229 22 H -0.209 1.209 23 C 0.023 3.977 24 C -0.155 4.155 25 C -0.021 4.021 26 C 0.045 3.955 27 C -0.163 4.163 28 N -0.197 5.197 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.098 0.902 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.216 2.017 15.001 27.715 hybrid contribution -0.688 -0.197 -0.582 0.922 sum -23.904 1.820 14.420 27.976 Atomic orbital electron populations 1.20778 0.88443 1.03814 1.03362 1.21487 0.97250 0.88178 0.92088 1.21872 0.94364 0.99557 1.04623 1.21718 0.94590 0.97174 0.93067 1.20743 0.94589 0.95119 1.08392 1.18066 0.86204 0.78936 0.81467 1.90795 1.70804 1.42399 1.36926 1.48088 1.07905 1.47694 1.29389 1.21815 0.78096 1.02450 0.98677 1.21649 1.02409 0.98640 0.92264 1.21102 0.93368 0.95770 0.97027 1.22646 0.97511 0.95877 0.99903 1.22107 0.96178 0.91383 0.92566 1.44845 1.12563 1.33123 1.43387 1.20110 0.94092 1.13204 1.17635 0.90484 1.25735 0.90658 1.04901 1.01267 1.70921 1.27612 1.17635 1.40833 0.83849 0.73625 0.75808 0.75991 1.23127 1.22925 1.20906 1.21504 0.87470 0.96929 0.91789 1.21726 0.95920 1.02173 0.95680 1.22021 0.97286 0.94555 0.88258 1.21319 0.88669 0.94928 0.90581 1.20792 0.99812 0.91763 1.03931 1.67422 1.08844 1.29170 1.14233 0.90067 0.90376 0.90177 0.84121 0.84134 0.88900 0.90942 0.91773 0.89275 0.91355 0.91614 0.93203 0.95278 0.92929 0.96094 0.93859 0.90399 0.91518 0.89788 0.90752 0.89486 0.90213 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.16 36.00 0.37 -0.22 16 2 C 0.15 1.29 6.78 -82.51 -0.56 0.73 16 3 C -0.18 -1.36 9.72 -39.50 -0.38 -1.75 16 4 C -0.04 -0.34 7.59 -38.87 -0.30 -0.63 16 5 C -0.18 -2.05 4.85 -104.82 -0.51 -2.56 16 6 C 0.57 7.33 6.10 -12.33 -0.08 7.26 16 7 O -0.53 -8.50 15.43 5.32 0.08 -8.41 16 8 N -0.60 -7.05 2.96 -173.69 -0.51 -7.57 16 9 C 0.11 1.42 6.12 -3.63 -0.02 1.40 16 10 C -0.11 -1.63 4.87 -27.01 -0.13 -1.76 16 11 C -0.07 -1.05 0.55 -153.99 -0.08 -1.14 16 12 C -0.12 -1.85 4.92 -25.24 -0.12 -1.98 16 13 C 0.10 2.14 4.24 -2.96 -0.01 2.12 16 14 N -0.61 -14.55 3.37 -170.18 -0.57 -15.12 16 15 C -0.32 -9.19 10.55 -15.06 -0.16 -9.35 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C -0.03 -0.78 5.49 -17.43 -0.10 -0.87 16 18 N -0.93 -29.25 13.70 55.49 0.76 -28.49 16 19 Si 1.07 26.69 24.53 -169.99 -4.17 22.52 16 20 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 21 H -0.30 -7.21 6.70 56.52 0.38 -6.83 16 22 H -0.28 -6.34 5.22 56.52 0.30 -6.04 16 23 C 0.15 2.85 6.16 -2.75 -0.02 2.84 16 24 C -0.12 -1.33 4.84 -27.01 -0.13 -1.46 16 25 C 0.10 0.99 5.36 -3.63 -0.02 0.97 16 26 C 0.18 2.13 6.82 -82.18 -0.56 1.57 16 27 C -0.11 -1.13 9.46 36.01 0.34 -0.79 16 28 N -0.49 -5.40 10.17 -5.42 -0.06 -5.46 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.27 8.07 -51.92 -0.42 -0.15 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.14 0.94 7.51 -52.49 -0.39 0.54 16 34 H 0.09 1.27 7.01 -51.93 -0.36 0.90 16 35 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 36 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 37 H 0.09 1.53 7.82 -51.92 -0.41 1.12 16 38 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 39 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 40 H 0.05 1.11 5.95 -51.93 -0.31 0.80 16 41 H 0.03 0.65 4.47 -51.93 -0.23 0.42 16 42 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 43 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 44 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 45 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.72 4.76 -51.93 -0.25 0.47 16 48 H 0.07 0.64 7.62 -51.93 -0.40 0.25 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.08 0.90 6.59 -51.93 -0.34 0.56 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -34.42 382.11 -9.28 -43.70 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.10 Total: -1.30 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.47 Total: -5.63 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.38 Total: -56.64 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -4.17 Total: 22.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.42 -9.28 -43.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035256647.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.133 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds