Wall clock time and date at job start Wed Apr 1 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38221 * 120.41773 * 2 1 4 4 N 1.31863 * 120.76221 * 180.29676 * 3 2 1 5 5 C 1.31880 * 121.72278 * 359.94851 * 4 3 2 6 6 C 1.38185 * 120.77014 * 0.05383 * 5 4 3 7 7 C 1.50700 * 120.41821 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46922 * 270.01715 * 7 6 5 9 9 C 1.50699 * 109.47306 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99419 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00193 * 180.02562 * 9 8 7 12 12 C 1.46886 * 120.46438 * 359.72177 * 11 9 8 13 13 C 1.52860 * 109.01822 * 235.48848 * 12 11 9 14 14 C 1.52674 * 109.17364 * 307.81754 * 13 12 11 15 15 C 1.53485 * 113.62133 * 188.99451 * 14 13 12 16 16 N 1.47675 * 85.98520 * 137.70639 * 15 14 13 17 17 C 1.36933 * 134.45492 * 155.71200 * 16 15 14 18 18 H 1.07997 * 120.00111 * 179.97438 * 17 16 15 19 19 C 1.38817 * 120.00363 * 359.95487 * 17 16 15 20 20 N 1.31624 * 119.99582 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00293 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47001 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46948 * 120.00143 * 21 19 17 24 24 H 1.48500 * 109.47115 * 239.99826 * 21 19 17 25 25 C 1.47661 * 91.08623 * 335.68073 * 16 15 14 26 26 C 1.52672 * 113.18734 * 57.46051 * 14 13 12 27 27 C 1.46877 * 120.46757 * 179.97438 * 11 9 8 28 28 C 1.38635 * 120.41887 * 180.27454 * 2 1 3 29 29 H 1.08999 * 109.47245 * 269.72372 * 1 2 3 30 30 H 1.08991 * 109.46674 * 29.72400 * 1 2 3 31 31 H 1.09007 * 109.46846 * 149.72305 * 1 2 3 32 32 H 1.07993 * 119.62150 * 0.27487 * 3 2 1 33 33 H 1.08011 * 119.61549 * 180.02562 * 5 4 3 34 34 H 1.08996 * 109.47488 * 30.01233 * 7 6 5 35 35 H 1.08999 * 109.47316 * 150.02037 * 7 6 5 36 36 H 1.09004 * 109.46848 * 300.00664 * 8 7 6 37 37 H 1.08999 * 109.46862 * 60.00044 * 8 7 6 38 38 H 1.09002 * 109.59164 * 355.31218 * 12 11 9 39 39 H 1.08998 * 109.58935 * 115.74827 * 12 11 9 40 40 H 1.09000 * 109.61027 * 187.84400 * 13 12 11 41 41 H 1.09002 * 109.38801 * 67.65574 * 13 12 11 42 42 H 1.09001 * 113.78773 * 251.97182 * 15 14 13 43 43 H 1.08992 * 113.79124 * 23.44214 * 15 14 13 44 44 H 0.96997 * 119.99632 * 179.97438 * 20 19 17 45 45 H 1.08992 * 113.79230 * 270.04818 * 25 16 15 46 46 H 1.09001 * 113.79007 * 138.57714 * 25 16 15 47 47 H 1.08994 * 109.53272 * 182.51694 * 26 14 13 48 48 H 1.09003 * 109.52798 * 62.29441 * 26 14 13 49 49 H 1.09003 * 109.59011 * 244.25642 * 27 11 9 50 50 H 1.09003 * 109.58756 * 4.68914 * 27 11 9 51 51 H 1.08003 * 120.78810 * 359.74906 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0059 5 6 4.2256 0.0823 -0.0109 6 6 3.5948 -1.1471 -0.0113 7 6 4.4027 -2.4193 -0.0177 8 6 4.6706 -2.8460 -1.4624 9 6 5.4779 -4.1185 -1.4689 10 8 5.8071 -4.6330 -0.4211 11 7 5.8351 -4.6840 -2.6389 12 6 5.4377 -4.0722 -3.9138 13 6 4.6822 -5.1061 -4.7484 14 6 5.5181 -6.3800 -4.8455 15 6 4.9596 -7.4079 -5.8390 16 7 6.3602 -7.6033 -6.2645 17 6 7.0473 -8.6262 -6.8616 18 1 8.1004 -8.5173 -7.0748 19 6 6.3904 -9.8035 -7.1924 20 7 5.1071 -9.9367 -6.9317 21 14 7.3276 -11.1987 -8.0075 22 1 8.7467 -10.8013 -8.1904 23 1 7.2594 -12.4087 -7.1492 24 1 6.7217 -11.4956 -9.3304 25 6 6.7225 -6.2532 -5.7888 26 6 5.8693 -6.9738 -3.4835 27 6 6.6224 -5.9238 -2.6571 28 6 2.2090 -1.1955 -0.0057 29 1 -0.3634 -0.0050 1.0276 30 1 -0.3632 0.8924 -0.5095 31 1 -0.3633 -0.8876 -0.5182 32 1 1.6675 2.1276 0.0045 33 1 5.3047 0.1285 -0.0152 34 1 5.3507 -2.2502 0.4928 35 1 3.8481 -3.2045 0.4962 36 1 3.7225 -3.0150 -1.9731 37 1 5.2251 -2.0608 -1.9763 38 1 4.7906 -3.2161 -3.7223 39 1 6.3259 -3.7476 -4.4559 40 1 4.5043 -4.7100 -5.7482 41 1 3.7292 -5.3313 -4.2695 42 1 4.5182 -8.2839 -5.3637 43 1 4.3226 -6.9737 -6.6095 44 1 4.6481 -10.7592 -7.1633 45 1 6.6094 -5.4757 -6.5443 46 1 7.6821 -6.2114 -5.2735 47 1 6.5010 -7.8513 -3.6205 48 1 4.9547 -7.2594 -2.9638 49 1 7.5956 -5.7321 -3.1090 50 1 6.7554 -6.2872 -1.6381 51 1 1.6888 -2.1420 -0.0062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035747458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:47 Heat of formation + Delta-G solvation = 40.225269 kcal Electronic energy + Delta-G solvation = -29597.544322 eV Core-core repulsion = 25690.897893 eV Total energy + Delta-G solvation = -3906.646430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.74172 -40.27470 -38.76987 -35.82224 -34.90276 -33.93282 -32.52948 -31.47450 -30.65819 -29.93418 -27.67625 -26.94099 -25.50148 -24.97578 -23.58373 -23.40845 -22.78061 -21.39462 -20.96033 -19.35043 -17.76523 -17.28735 -17.03007 -16.79702 -16.69197 -15.84497 -15.55948 -14.90386 -14.74323 -14.63699 -14.60054 -14.06444 -13.81061 -13.73030 -13.62013 -13.40300 -13.36874 -13.14069 -12.89069 -12.74276 -12.67739 -12.36492 -12.15885 -12.08868 -11.82190 -11.71150 -11.30417 -11.12220 -11.04630 -10.88410 -10.84522 -10.34290 -10.19080 -9.98287 -9.79139 -9.73360 -9.71889 -9.52406 -9.35878 -9.11201 -8.79656 -8.44759 -6.86422 -5.76840 -3.08496 0.74774 0.94203 2.63439 3.03699 3.37920 3.43486 3.45110 3.45868 4.07523 4.29681 4.39153 4.45212 4.58340 4.63393 4.64975 4.77159 4.79051 4.90462 4.99455 5.04524 5.15814 5.20569 5.21434 5.25380 5.32143 5.36012 5.40251 5.48298 5.53500 5.54558 5.63961 5.68427 5.83501 5.85999 5.88734 5.91045 5.94954 6.00717 6.16877 6.26070 6.29138 6.38813 6.42996 6.60673 6.63303 6.79480 6.86264 7.23097 7.37014 7.47534 7.58424 7.65382 7.98935 8.19252 9.05251 9.71302 10.61346 11.40207 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.001940 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.203378 B =14430.561376 C =14844.347667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C 0.090 3.910 4 N -0.481 5.481 5 C 0.094 3.906 6 C -0.125 4.125 7 C -0.061 4.061 8 C -0.134 4.134 9 C 0.513 3.487 10 O -0.549 6.549 11 N -0.604 5.604 12 C 0.109 3.891 13 C -0.119 4.119 14 C -0.108 4.108 15 C 0.173 3.827 16 N -0.609 5.609 17 C -0.220 4.220 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.126 3.874 26 C -0.096 4.096 27 C 0.112 3.888 28 C -0.074 4.074 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.024 0.976 44 H 0.252 0.748 45 H 0.031 0.969 46 H 0.040 0.960 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.443 20.934 13.315 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.068 4.068 4 N -0.188 5.188 5 C -0.063 4.063 6 C -0.127 4.127 7 C -0.099 4.099 8 C -0.174 4.174 9 C 0.301 3.699 10 O -0.427 6.427 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.158 4.158 14 C -0.110 4.110 15 C 0.048 3.952 16 N -0.335 5.335 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.000 4.000 26 C -0.134 4.134 27 C -0.009 4.009 28 C -0.100 4.100 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.105 0.895 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.752 21.137 13.708 26.083 hybrid contribution -0.083 -1.597 -0.905 1.837 sum -6.835 19.540 12.804 24.341 Atomic orbital electron populations 1.20739 0.90157 1.03284 1.02671 1.20960 0.97645 0.94143 1.00981 1.22661 0.89994 0.97464 0.96633 1.67687 1.08361 1.31274 1.11458 1.22697 1.00348 0.87124 0.96105 1.20948 0.94535 0.96751 1.00508 1.20282 1.00355 0.93430 0.95872 1.21675 1.01186 0.96001 0.98532 1.20560 0.79970 0.85991 0.83375 1.90684 1.56187 1.64634 1.31242 1.48141 1.53713 1.26111 1.05767 1.21702 0.99641 0.95837 0.84241 1.21753 0.98702 0.95632 0.99739 1.22387 0.97784 0.95346 0.95461 1.22231 0.87709 0.94217 0.91070 1.45969 1.06103 1.10133 1.71323 1.19055 0.92454 0.91379 1.31896 0.90361 1.24769 0.95946 0.98084 1.01753 1.69828 1.08048 1.26481 1.52496 0.86081 0.78761 0.82326 0.78810 1.20506 1.21744 1.21826 1.22590 0.95441 0.88783 0.93179 1.21487 1.00513 0.97798 0.93583 1.21707 0.93898 0.83658 1.01679 1.21460 0.93475 0.98353 0.96747 0.90860 0.91112 0.91150 0.83008 0.82807 0.89707 0.89851 0.88791 0.88799 0.90307 0.91119 0.90637 0.91840 0.91012 0.95795 0.93767 0.95172 0.94165 0.89503 0.92191 0.91488 0.89388 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.01 0.36 -0.16 16 2 C -0.14 -0.98 5.90 -104.48 -0.62 -1.59 16 3 C 0.09 0.73 10.86 -17.54 -0.19 0.54 16 4 N -0.48 -4.81 10.36 -13.25 -0.14 -4.95 16 5 C 0.09 0.84 10.86 -17.55 -0.19 0.65 16 6 C -0.13 -1.03 5.15 -104.48 -0.54 -1.57 16 7 C -0.06 -0.52 4.66 -27.88 -0.13 -0.65 16 8 C -0.13 -1.16 4.02 -27.88 -0.11 -1.27 16 9 C 0.51 6.45 7.69 -10.99 -0.08 6.36 16 10 O -0.55 -8.79 15.37 5.55 0.09 -8.70 16 11 N -0.60 -7.65 2.95 -172.93 -0.51 -8.16 16 12 C 0.11 1.17 6.19 -3.90 -0.02 1.14 16 13 C -0.12 -1.56 5.24 -26.97 -0.14 -1.71 16 14 C -0.11 -1.86 0.77 -154.42 -0.12 -1.98 16 15 C 0.17 3.91 6.64 -3.16 -0.02 3.89 16 16 N -0.61 -15.12 3.53 -179.77 -0.64 -15.75 16 17 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.08 11.39 55.49 0.63 -26.45 16 21 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 C 0.13 2.43 7.72 -3.15 -0.02 2.41 16 26 C -0.10 -1.60 5.22 -26.70 -0.14 -1.74 16 27 C 0.11 1.62 6.30 -3.64 -0.02 1.60 16 28 C -0.07 -0.57 9.55 -39.28 -0.37 -0.95 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.09 0.72 7.71 -51.93 -0.40 0.32 16 37 H 0.09 0.68 7.91 -51.93 -0.41 0.27 16 38 H 0.08 0.64 5.89 -51.93 -0.31 0.33 16 39 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 40 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 43 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.03 0.56 8.07 -51.93 -0.42 0.15 16 46 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 47 H 0.09 1.68 8.01 -51.93 -0.42 1.27 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.07 0.95 7.49 -51.93 -0.39 0.56 16 50 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 51 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -33.44 405.39 -10.58 -44.02 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.48 Total: -1.54 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.62 Total: -1.63 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.65 Total: -55.31 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.44 -10.58 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035747458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.244 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds