Wall clock time and date at job start Wed Apr 1 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38354 * 119.46140 * 2 1 4 4 C 1.38355 * 119.30197 * 180.27866 * 3 2 1 5 5 C 1.50706 * 120.85518 * 179.75573 * 4 3 2 6 6 C 1.40020 * 118.28935 * 359.47557 * 4 3 2 7 7 C 1.47848 * 120.56178 * 180.27680 * 6 4 3 8 8 O 1.21554 * 119.99956 * 89.99717 * 7 6 4 9 9 N 1.34774 * 119.99943 * 270.00219 * 7 6 4 10 10 C 1.46884 * 120.46408 * 359.71981 * 9 7 6 11 11 C 1.52860 * 109.02020 * 235.48756 * 10 9 7 12 12 C 1.52678 * 109.17344 * 307.82120 * 11 10 9 13 13 C 1.53480 * 113.61974 * 188.99542 * 12 11 10 14 14 N 1.47672 * 85.98646 * 137.70515 * 13 12 11 15 15 C 1.36935 * 134.45539 * 155.71142 * 14 13 12 16 16 H 1.08002 * 119.99804 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00226 * 359.95251 * 15 14 13 18 18 N 1.31615 * 119.99825 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00226 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47012 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47241 * 119.99737 * 19 17 15 22 22 H 1.48497 * 109.47203 * 240.00228 * 19 17 15 23 23 C 1.47666 * 91.08737 * 335.68134 * 14 13 12 24 24 C 1.52669 * 113.18553 * 57.46027 * 12 11 10 25 25 C 1.46880 * 120.46836 * 179.97438 * 9 7 6 26 26 C 1.39523 * 118.88217 * 0.25621 * 6 4 3 27 27 C 1.50698 * 119.71440 * 180.02562 * 26 6 4 28 28 N 1.31692 * 120.56694 * 0.02562 * 26 6 4 29 29 H 1.09005 * 109.47170 * 270.25708 * 1 2 3 30 30 H 1.08998 * 109.47220 * 30.25657 * 1 2 3 31 31 H 1.09001 * 109.47495 * 150.25889 * 1 2 3 32 32 H 1.08002 * 120.34788 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46953 * 269.71281 * 5 4 3 34 34 H 1.09000 * 109.47318 * 29.70879 * 5 4 3 35 35 H 1.09000 * 109.47161 * 149.71509 * 5 4 3 36 36 H 1.09000 * 109.59237 * 355.31801 * 10 9 7 37 37 H 1.09005 * 109.58727 * 115.74980 * 10 9 7 38 38 H 1.09001 * 109.61086 * 187.84225 * 11 10 9 39 39 H 1.08993 * 109.44651 * 67.69512 * 11 10 9 40 40 H 1.09006 * 113.78400 * 251.96761 * 13 12 11 41 41 H 1.08992 * 113.79608 * 23.43677 * 13 12 11 42 42 H 0.97005 * 120.00030 * 179.97438 * 18 17 15 43 43 H 1.09009 * 113.78513 * 270.05242 * 23 14 13 44 44 H 1.08994 * 113.79575 * 138.57912 * 23 14 13 45 45 H 1.09005 * 109.52942 * 182.52241 * 24 12 11 46 46 H 1.09000 * 109.59505 * 62.33127 * 24 12 11 47 47 H 1.09004 * 109.59097 * 244.26223 * 25 9 7 48 48 H 1.09007 * 109.58727 * 4.68505 * 25 9 7 49 49 H 1.09001 * 109.47327 * 90.00142 * 27 26 6 50 50 H 1.09003 * 109.46961 * 209.99984 * 27 26 6 51 51 H 1.09003 * 109.47280 * 329.99306 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2008 -0.0059 5 6 4.3474 2.4924 -0.0116 6 6 4.2311 -0.0340 -0.0003 7 6 5.7083 -0.0967 -0.0001 8 8 6.3155 -0.1177 1.0527 9 7 6.3815 -0.1304 -1.1671 10 6 5.6578 -0.1116 -2.4451 11 6 6.0788 -1.3251 -3.2739 12 6 7.6023 -1.3666 -3.3642 13 6 8.1314 -2.4154 -4.3520 14 7 9.0934 -1.3787 -4.7768 15 6 10.3281 -1.4008 -5.3685 16 1 10.8410 -0.4748 -5.5826 17 6 10.9208 -2.6135 -5.6927 18 7 10.2962 -3.7420 -5.4309 19 14 12.6055 -2.6437 -6.4992 20 1 13.0904 -1.2524 -6.6849 21 1 13.5553 -3.3881 -5.6338 22 1 12.5097 -3.3145 -7.8206 23 6 8.1900 -0.3086 -4.3086 24 6 8.2843 -1.4129 -1.9992 25 6 7.8490 -0.1922 -1.1788 26 6 3.4715 -1.2043 0.0054 27 6 4.1627 -2.5434 0.0120 28 7 2.1558 -1.1487 0.0050 29 1 -0.3634 0.0046 1.0277 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3634 -0.8923 -0.5098 32 1 1.6443 2.1382 0.0004 33 1 4.5347 2.7992 -1.0406 34 1 3.7719 3.2647 0.4987 35 1 5.2974 2.3475 0.5029 36 1 4.5848 -0.1532 -2.2582 37 1 5.9010 0.8010 -2.9893 38 1 5.6562 -1.2483 -4.2758 39 1 5.7173 -2.2348 -2.7947 40 1 8.5965 -3.2764 -3.8717 41 1 7.4145 -2.6930 -5.1246 42 1 10.7102 -4.5895 -5.6578 43 1 7.4904 0.0399 -5.0684 44 1 8.7014 0.5048 -3.7939 45 1 9.3662 -1.3957 -2.1316 46 1 7.9954 -2.3250 -1.4769 47 1 8.2494 0.7147 -1.6320 48 1 8.2189 -0.2870 -0.1579 49 1 4.3292 -2.8613 1.0412 50 1 3.5384 -3.2770 -0.4983 51 1 5.1202 -2.4607 -0.5024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035753055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:19 Heat of formation + Delta-G solvation = 45.610556 kcal Electronic energy + Delta-G solvation = -31209.606873 eV Core-core repulsion = 27303.193967 eV Total energy + Delta-G solvation = -3906.412906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23237 -39.86934 -38.55491 -35.76079 -34.49746 -34.00613 -32.47567 -31.09918 -30.49210 -29.34627 -28.13616 -27.60124 -26.69283 -25.05966 -23.80120 -23.33708 -22.31204 -21.43979 -21.07432 -19.75170 -18.04103 -17.28318 -16.87672 -16.68147 -16.24296 -15.27911 -15.06830 -14.90292 -14.70909 -14.69211 -14.41235 -13.79098 -13.72223 -13.64039 -13.51305 -13.41566 -13.29005 -13.13532 -12.81458 -12.51554 -12.50557 -12.36689 -12.27712 -12.09374 -11.97215 -11.92107 -11.71607 -11.11600 -11.05876 -10.88611 -10.85329 -10.35377 -10.24832 -10.15993 -9.73404 -9.71650 -9.63448 -9.50754 -9.35896 -8.95463 -8.79149 -8.49624 -6.85823 -5.76153 -3.07855 0.66993 0.95172 2.48913 2.96506 3.38385 3.39078 3.43884 3.46311 3.89842 4.25473 4.29671 4.40472 4.45741 4.78024 4.89461 5.00656 5.02883 5.07973 5.14389 5.20909 5.23367 5.27270 5.29060 5.30253 5.32503 5.40578 5.47755 5.48624 5.52195 5.57755 5.67406 5.73666 5.83064 5.86815 5.89539 5.91832 5.94200 5.96637 6.15989 6.24798 6.30022 6.40199 6.41468 6.59466 6.62893 6.79376 6.84922 7.23872 7.36805 7.38250 7.59046 7.73165 7.99439 8.08843 9.05754 9.71917 10.61913 11.40785 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.002636 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.193012 B =10618.165169 C =10884.087723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.145 3.855 3 C -0.183 4.183 4 C -0.004 4.004 5 C -0.123 4.123 6 C -0.178 4.178 7 C 0.571 3.429 8 O -0.537 6.537 9 N -0.595 5.595 10 C 0.112 3.888 11 C -0.118 4.118 12 C -0.108 4.108 13 C 0.174 3.826 14 N -0.609 5.609 15 C -0.221 4.221 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.127 3.873 24 C -0.096 4.096 25 C 0.112 3.888 26 C 0.175 3.825 27 C -0.112 4.112 28 N -0.487 5.487 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.024 0.976 42 H 0.252 0.748 43 H 0.030 0.970 44 H 0.040 0.960 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.957 9.990 10.838 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.203 4.203 4 C -0.012 4.012 5 C -0.180 4.180 6 C -0.184 4.184 7 C 0.357 3.643 8 O -0.415 6.415 9 N -0.327 5.327 10 C -0.011 4.011 11 C -0.157 4.157 12 C -0.109 4.109 13 C 0.048 3.952 14 N -0.335 5.335 15 C -0.348 4.348 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.001 3.999 24 C -0.134 4.134 25 C -0.010 4.010 26 C 0.036 3.964 27 C -0.169 4.169 28 N -0.198 5.198 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.103 0.897 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.779 9.073 11.241 23.692 hybrid contribution 1.279 0.705 -0.784 1.657 sum -17.500 9.777 10.457 22.610 Atomic orbital electron populations 1.20745 0.88561 1.03681 1.03216 1.21398 0.97097 0.88084 0.92702 1.21726 0.93598 0.99475 1.05533 1.20300 0.93784 0.94413 0.92663 1.20915 1.00323 0.93347 1.03385 1.20618 0.94608 0.94608 1.08522 1.18028 0.86266 0.76143 0.83833 1.90789 1.69233 1.50490 1.30962 1.48127 1.07593 1.71460 1.05502 1.21654 0.95816 0.99725 0.83894 1.21755 0.96981 0.97215 0.99767 1.22390 0.91999 1.01106 0.95452 1.22227 0.88938 0.92871 0.91134 1.45965 1.14543 1.01340 1.71620 1.19046 0.90828 0.92760 1.32200 0.90393 1.24758 0.98707 0.95256 1.01742 1.69823 1.37884 0.96534 1.52513 0.86093 0.83810 0.77346 0.78795 1.20540 1.21732 1.21838 1.22584 0.91674 0.92475 0.93212 1.21494 1.01758 0.96558 0.93571 1.21778 0.77878 0.99386 1.01916 1.21299 0.88819 0.94643 0.91595 1.20852 1.00151 0.92152 1.03783 1.67384 1.08798 1.29097 1.14524 0.90226 0.90546 0.90221 0.84373 0.89895 0.90449 0.90631 0.90781 0.91075 0.90613 0.91731 0.90958 0.95779 0.93759 0.95229 0.94175 0.89319 0.92040 0.91186 0.89219 0.89755 0.89680 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.16 36.00 0.37 -0.31 16 2 C 0.14 1.44 6.78 -82.51 -0.56 0.88 16 3 C -0.18 -1.66 9.43 -39.50 -0.37 -2.03 16 4 C 0.00 -0.04 5.95 -103.91 -0.62 -0.66 16 5 C -0.12 -1.07 9.69 36.01 0.35 -0.72 16 6 C -0.18 -2.26 3.62 -104.82 -0.38 -2.64 16 7 C 0.57 8.15 4.23 -12.33 -0.05 8.10 16 8 O -0.54 -9.40 16.49 5.32 0.09 -9.31 16 9 N -0.59 -7.91 2.95 -174.03 -0.51 -8.42 16 10 C 0.11 1.34 6.19 -3.90 -0.02 1.31 16 11 C -0.12 -1.62 5.24 -26.97 -0.14 -1.76 16 12 C -0.11 -1.85 0.77 -154.42 -0.12 -1.97 16 13 C 0.17 3.91 6.64 -3.16 -0.02 3.89 16 14 N -0.61 -15.00 3.53 -179.78 -0.64 -15.63 16 15 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 18 N -0.92 -26.95 11.39 55.49 0.63 -26.32 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 C 0.13 2.42 7.72 -3.15 -0.02 2.40 16 24 C -0.10 -1.58 5.22 -26.71 -0.14 -1.71 16 25 C 0.11 1.60 6.30 -3.64 -0.02 1.58 16 26 C 0.17 2.21 6.69 -82.17 -0.55 1.66 16 27 C -0.11 -1.30 9.79 36.00 0.35 -0.95 16 28 N -0.49 -5.94 10.17 -5.42 -0.06 -6.00 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.07 0.80 7.19 -51.93 -0.37 0.42 16 36 H 0.07 0.83 6.20 -51.93 -0.32 0.51 16 37 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 39 H 0.06 0.87 8.06 -51.93 -0.42 0.46 16 40 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 41 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.03 0.56 8.07 -51.92 -0.42 0.14 16 44 H 0.04 0.74 7.41 -51.93 -0.38 0.35 16 45 H 0.09 1.69 8.01 -51.93 -0.42 1.27 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 48 H 0.09 1.34 6.97 -51.93 -0.36 0.97 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.08 0.97 6.99 -51.93 -0.36 0.61 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -32.87 403.07 -10.07 -42.94 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.42 Total: -0.83 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.21 Total: 0.50 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.57 Total: -56.38 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.87 -10.07 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035753055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.555 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds