Wall clock time and date at job start Wed Apr 1 2020 02:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76204 * 179.77181 * 3 2 1 5 5 C 1.31879 * 121.72754 * 0.49754 * 4 3 2 6 6 C 1.38179 * 120.76608 * 359.76987 * 5 4 3 7 7 C 1.50698 * 120.42060 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47238 * 270.02394 * 7 6 5 9 9 C 1.50698 * 109.47238 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99561 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99869 * 179.97438 * 9 8 7 12 12 C 1.47216 * 121.36051 * 359.72049 * 11 9 8 13 13 C 1.53261 * 107.49347 * 121.88973 * 12 11 9 14 14 C 1.53153 * 110.77354 * 58.09972 * 13 12 11 15 15 H 1.08999 * 112.21248 * 70.50883 * 14 13 12 16 16 C 1.53940 * 110.88506 * 304.60633 * 14 13 12 17 17 H 1.09000 * 109.50977 * 172.05453 * 16 14 13 18 18 C 1.54202 * 102.20710 * 287.22430 * 16 14 13 19 19 C 1.54716 * 102.06668 * 322.43533 * 18 16 14 20 20 N 1.47213 * 107.24461 * 21.51915 * 19 18 16 21 21 C 1.36939 * 125.89067 * 183.75701 * 20 19 18 22 22 H 1.07999 * 119.99388 * 179.97438 * 21 20 19 23 23 C 1.38806 * 120.00149 * 359.97438 * 21 20 19 24 24 N 1.31628 * 120.00110 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00351 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46802 * 59.99753 * 25 23 21 27 27 H 1.48494 * 109.47432 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46918 * 300.00340 * 25 23 21 29 29 C 1.46711 * 121.35925 * 179.97438 * 11 9 8 30 30 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 34 34 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 35 35 H 1.07997 * 119.61888 * 179.74900 * 5 4 3 36 36 H 1.09004 * 109.47119 * 30.01970 * 7 6 5 37 37 H 1.09002 * 109.47375 * 150.02183 * 7 6 5 38 38 H 1.09004 * 109.46720 * 299.99821 * 8 7 6 39 39 H 1.09002 * 109.47110 * 59.99626 * 8 7 6 40 40 H 1.09003 * 109.80167 * 241.47172 * 12 11 9 41 41 H 1.08994 * 109.80416 * 2.34070 * 12 11 9 42 42 H 1.08999 * 109.33651 * 297.70767 * 13 12 11 43 43 H 1.08995 * 109.10496 * 178.34959 * 13 12 11 44 44 H 1.08994 * 110.91412 * 80.63463 * 18 16 14 45 45 H 1.09002 * 110.90995 * 204.24325 * 18 16 14 46 46 H 1.09004 * 109.88748 * 262.10649 * 19 18 16 47 47 H 1.09004 * 110.02029 * 141.00569 * 19 18 16 48 48 H 0.96998 * 120.00180 * 180.02562 * 24 23 21 49 49 H 1.09000 * 109.14445 * 352.63094 * 29 11 9 50 50 H 1.09004 * 109.14596 * 111.77517 * 29 11 9 51 51 H 1.08005 * 120.78766 * 359.95426 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0045 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 4.4026 -2.4192 -0.0125 8 6 4.6760 -2.8427 -1.4572 9 6 5.4833 -4.1151 -1.4635 10 8 5.8084 -4.6322 -0.4157 11 7 5.8439 -4.6785 -2.6335 12 6 5.4603 -4.0798 -3.9226 13 6 6.7500 -3.7925 -4.6991 14 6 7.5610 -5.0762 -4.8989 15 1 7.0869 -5.7574 -5.6055 16 6 7.8492 -5.7590 -3.5497 17 1 8.3010 -6.7354 -3.7249 18 6 8.9103 -4.8259 -2.9322 19 6 9.7498 -4.4275 -4.1691 20 7 8.9085 -4.6477 -5.3569 21 6 9.2999 -4.4859 -6.6592 22 1 8.6010 -4.6752 -7.4605 23 6 10.5949 -4.0788 -6.9492 24 7 11.4467 -3.8486 -5.9725 25 14 11.1287 -3.8575 -8.7256 26 1 10.2756 -2.8296 -9.3743 27 1 12.5475 -3.4210 -8.7654 28 1 10.9873 -5.1466 -9.4492 29 6 6.6300 -5.9165 -2.6746 30 6 2.2090 -1.1954 -0.0059 31 1 -0.3633 -0.0051 1.0277 32 1 -0.3633 -0.8875 -0.5182 33 1 -0.3633 0.8925 -0.5095 34 1 1.6675 2.1277 0.0005 35 1 5.3046 0.1285 -0.0007 36 1 5.3488 -2.2514 0.5021 37 1 3.8462 -3.2056 0.4975 38 1 3.7298 -3.0105 -1.9717 39 1 5.2324 -2.0563 -1.9672 40 1 4.8365 -4.7767 -4.4824 41 1 4.9155 -3.1514 -3.7510 42 1 7.3513 -3.0711 -4.1459 43 1 6.4946 -3.3745 -5.6728 44 1 8.4433 -3.9508 -2.4805 45 1 9.5205 -5.3593 -2.2032 46 1 10.6431 -5.0494 -4.2270 47 1 10.0333 -3.3769 -4.1051 48 1 12.3515 -3.5638 -6.1752 49 1 6.9466 -6.1726 -1.6635 50 1 6.0093 -6.7213 -3.0684 51 1 1.6888 -2.1420 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768891.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:31 Heat of formation + Delta-G solvation = 16.669575 kcal Electronic energy + Delta-G solvation = -30109.035862 eV Core-core repulsion = 26201.367981 eV Total energy + Delta-G solvation = -3907.667881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67242 -40.16765 -38.29796 -35.27329 -34.82846 -33.88381 -32.65622 -31.42415 -30.63121 -29.30767 -28.23902 -27.62572 -25.69155 -24.74396 -23.50665 -23.04959 -22.62526 -21.13446 -20.02852 -19.62707 -18.11281 -17.32782 -17.07690 -16.95039 -16.82942 -15.78232 -15.52248 -14.79140 -14.74863 -14.61784 -14.45536 -13.91277 -13.74058 -13.63587 -13.35647 -13.32166 -13.19982 -12.99664 -12.81850 -12.75216 -12.63159 -12.31068 -11.99609 -11.76294 -11.69428 -11.52682 -11.31012 -11.23604 -11.09635 -10.83161 -10.72770 -10.13132 -9.97153 -9.89132 -9.80451 -9.75407 -9.67209 -9.60211 -9.50144 -9.04853 -8.63245 -8.43063 -6.85883 -5.71001 -3.05002 0.81185 1.00006 2.70927 3.09839 3.38969 3.43340 3.44990 3.51733 4.14290 4.37289 4.43778 4.47050 4.63787 4.67893 4.71583 4.84304 4.87624 4.99124 5.10330 5.14103 5.17555 5.27396 5.33315 5.36797 5.40992 5.44565 5.46465 5.58634 5.60788 5.62894 5.69920 5.80890 5.89296 5.90907 5.93622 6.00143 6.04356 6.06521 6.26377 6.28121 6.38611 6.45432 6.52362 6.60694 6.76166 6.89054 7.05919 7.54872 7.55931 7.63977 7.73024 7.83196 8.24158 8.26420 9.20501 9.80527 10.48456 11.40068 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002339 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.503183 B =11968.862461 C =12772.524552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 C 0.090 3.910 4 N -0.479 5.479 5 C 0.097 3.903 6 C -0.126 4.126 7 C -0.060 4.060 8 C -0.134 4.134 9 C 0.517 3.483 10 O -0.549 6.549 11 N -0.603 5.603 12 C 0.105 3.895 13 C -0.142 4.142 14 C 0.166 3.834 15 H 0.060 0.940 16 C -0.114 4.114 17 H 0.080 0.920 18 C -0.135 4.135 19 C 0.179 3.821 20 N -0.602 5.602 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.127 3.873 30 C -0.075 4.075 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.035 0.965 48 H 0.252 0.748 49 H 0.087 0.913 50 H 0.060 0.940 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.238 3.721 11.405 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.067 4.067 4 N -0.186 5.186 5 C -0.060 4.060 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.174 4.174 9 C 0.306 3.694 10 O -0.428 6.428 11 N -0.336 5.336 12 C -0.018 4.018 13 C -0.183 4.183 14 C 0.058 3.942 15 H 0.078 0.922 16 C -0.134 4.134 17 H 0.098 0.902 18 C -0.173 4.173 19 C 0.054 3.946 20 N -0.326 5.326 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 C 0.004 3.996 30 C -0.101 4.101 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.105 0.895 50 H 0.079 0.921 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.354 4.325 11.828 23.935 hybrid contribution 0.008 -0.559 -1.174 1.300 sum -20.346 3.766 10.654 23.273 Atomic orbital electron populations 1.20726 0.90236 1.03177 1.02590 1.20943 0.97564 0.94183 1.01274 1.22668 0.90033 0.97436 0.96586 1.67695 1.08315 1.31301 1.11332 1.22742 1.00488 0.87092 0.95708 1.20953 0.94509 0.96804 1.00494 1.20278 1.00392 0.93337 0.95871 1.21660 1.00987 0.96203 0.98505 1.20478 0.80041 0.85765 0.83163 1.90677 1.56469 1.64467 1.31176 1.48111 1.53076 1.26452 1.05945 1.21981 0.98034 0.97995 0.83802 1.22602 0.94834 1.01162 0.99717 1.21168 0.88035 0.92580 0.92411 0.92184 1.21878 0.94970 1.00332 0.96219 0.90184 1.22752 0.97358 0.98216 0.98995 1.21199 0.91958 0.99331 0.82119 1.44947 1.06289 1.79121 1.02251 1.18985 0.95558 1.39176 0.81859 0.90590 1.24797 0.96381 1.01830 0.97457 1.69959 1.05266 1.52241 1.29383 0.86225 0.77562 0.77859 0.84245 1.21243 1.21665 1.21232 1.20945 0.92063 0.85089 1.01498 1.21422 0.93443 0.98239 0.97002 0.90920 0.91281 0.91142 0.83031 0.82667 0.89609 0.89963 0.89029 0.88580 0.91310 0.90466 0.91403 0.91383 0.92804 0.92451 0.93205 0.94730 0.93739 0.89511 0.92145 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.04 36.01 0.36 -0.18 16 2 C -0.14 -1.07 5.90 -104.48 -0.62 -1.69 16 3 C 0.09 0.81 10.86 -17.55 -0.19 0.62 16 4 N -0.48 -5.39 10.36 -13.26 -0.14 -5.52 16 5 C 0.10 0.99 10.86 -17.55 -0.19 0.80 16 6 C -0.13 -1.16 5.15 -104.49 -0.54 -1.70 16 7 C -0.06 -0.58 4.66 -27.88 -0.13 -0.71 16 8 C -0.13 -1.32 4.05 -27.88 -0.11 -1.43 16 9 C 0.52 6.98 7.72 -10.99 -0.08 6.90 16 10 O -0.55 -9.15 15.45 5.56 0.09 -9.06 16 11 N -0.60 -8.12 2.79 -174.04 -0.49 -8.60 16 12 C 0.11 1.27 6.39 -3.52 -0.02 1.25 16 13 C -0.14 -2.32 5.24 -26.52 -0.14 -2.46 16 14 C 0.17 3.12 3.62 -66.19 -0.24 2.88 16 15 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.11 -1.93 2.89 -90.56 -0.26 -2.20 16 17 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 18 C -0.13 -2.57 5.89 -25.20 -0.15 -2.72 16 19 C 0.18 4.29 5.09 -2.75 -0.01 4.28 16 20 N -0.60 -14.63 2.88 -161.78 -0.47 -15.10 16 21 C -0.23 -6.12 10.30 -15.06 -0.16 -6.28 16 22 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -26.92 10.35 55.49 0.57 -26.35 16 25 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.13 1.82 5.83 -4.98 -0.03 1.79 16 30 C -0.08 -0.61 9.54 -39.28 -0.37 -0.99 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 35 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 38 H 0.09 0.75 7.89 -51.93 -0.41 0.34 16 39 H 0.10 0.93 7.82 -51.93 -0.41 0.52 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.76 6.04 -51.93 -0.31 0.45 16 42 H 0.07 1.26 6.92 -51.93 -0.36 0.90 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 1.02 7.41 -51.93 -0.38 0.64 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.34 7.24 -51.93 -0.38 0.97 16 47 H 0.03 0.93 7.66 -51.93 -0.40 0.53 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -32.60 399.86 -10.87 -43.47 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.46 Total: 0.44 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.98 Total: -2.15 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.52 Total: -55.57 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.60 -10.87 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768891.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.138 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds