Wall clock time and date at job start Wed Apr 1 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38220 * 120.42005 * 2 1 4 4 N 1.31861 * 120.76489 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72344 * 359.97438 * 4 3 2 6 6 C 1.38184 * 120.76449 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41404 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46987 * 90.00856 * 7 6 5 9 9 C 1.50702 * 109.46987 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00115 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99518 * 179.97438 * 9 8 7 12 12 C 1.46587 * 119.68932 * 359.97438 * 11 9 8 13 13 C 1.53956 * 110.58915 * 132.18590 * 12 11 9 14 14 C 1.51515 * 107.34323 * 51.04562 * 13 12 11 15 15 H 1.09001 * 108.81624 * 53.44916 * 14 13 12 16 16 C 1.55366 * 107.78504 * 295.14651 * 14 13 12 17 17 H 1.09002 * 111.50631 * 308.83655 * 16 14 13 18 18 C 1.53743 * 100.22520 * 190.94111 * 16 14 13 19 19 C 1.55287 * 101.84299 * 39.09063 * 18 16 14 20 20 N 1.45470 * 117.33973 * 178.10727 * 14 13 12 21 21 C 1.36936 * 126.40601 * 329.39931 * 20 14 13 22 22 H 1.07995 * 119.99923 * 359.97253 * 21 20 14 23 23 C 1.38815 * 119.99873 * 179.97438 * 21 20 14 24 24 N 1.31615 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47015 * 60.00039 * 25 23 21 27 27 H 1.48495 * 109.47068 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47147 * 300.00278 * 25 23 21 29 29 C 1.48105 * 119.01867 * 179.45650 * 11 9 8 30 30 C 1.38630 * 120.41752 * 180.29347 * 2 1 3 31 31 H 1.08998 * 109.46708 * 90.00375 * 1 2 3 32 32 H 1.09001 * 109.47324 * 210.00216 * 1 2 3 33 33 H 1.08999 * 109.46974 * 330.00419 * 1 2 3 34 34 H 1.08000 * 119.61937 * 359.97438 * 3 2 1 35 35 H 1.07996 * 119.61626 * 180.02562 * 5 4 3 36 36 H 1.08996 * 109.47428 * 330.00126 * 7 6 5 37 37 H 1.09004 * 109.46869 * 210.00188 * 7 6 5 38 38 H 1.08996 * 109.47633 * 59.99395 * 8 7 6 39 39 H 1.09004 * 109.46771 * 299.99392 * 8 7 6 40 40 H 1.09000 * 109.25567 * 11.90108 * 12 11 9 41 41 H 1.09001 * 109.22726 * 252.45114 * 12 11 9 42 42 H 1.09003 * 109.87952 * 291.59057 * 13 12 11 43 43 H 1.08994 * 109.88506 * 170.50817 * 13 12 11 44 44 H 1.08996 * 110.95294 * 157.22978 * 18 16 14 45 45 H 1.08998 * 110.95326 * 280.95230 * 18 16 14 46 46 H 1.08995 * 109.92218 * 96.86977 * 19 18 16 47 47 H 1.09003 * 109.91963 * 218.17819 * 19 18 16 48 48 H 0.97005 * 120.00046 * 179.97438 * 24 23 21 49 49 H 1.09005 * 108.77781 * 112.83675 * 29 11 9 50 50 H 1.09008 * 111.53725 * 351.16707 * 29 11 9 51 51 H 1.08001 * 120.78772 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4193 -0.0012 8 6 4.6765 -2.8502 1.4412 9 6 5.4839 -4.1227 1.4406 10 8 5.8079 -4.6348 0.3901 11 7 5.8458 -4.6916 2.6075 12 6 5.4508 -4.0665 3.8733 13 6 4.8508 -5.1130 4.8299 14 6 5.8269 -6.2696 4.9038 15 1 6.8109 -5.8828 5.1688 16 6 5.8968 -6.9222 3.4956 17 1 4.9028 -7.1522 3.1119 18 6 6.6778 -8.2043 3.8274 19 6 6.0695 -8.6017 5.1998 20 7 5.4899 -7.3726 5.7903 21 6 4.7705 -7.2905 6.9525 22 1 4.3941 -6.3356 7.2883 23 6 4.5251 -8.4347 7.6992 24 7 4.9843 -9.5984 7.2903 25 14 3.5431 -8.3229 9.2843 26 1 2.1890 -7.7886 8.9910 27 1 3.4226 -9.6741 9.8883 28 1 4.2377 -7.4168 10.2340 29 6 6.6287 -5.9486 2.5817 30 6 2.2089 -1.1955 -0.0061 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6675 2.1276 -0.0004 35 1 5.3047 0.1284 -0.0005 36 1 5.3485 -2.2488 -0.5153 37 1 3.8460 -3.2030 -0.5150 38 1 3.7307 -3.0207 1.9553 39 1 5.2332 -2.0665 1.9550 40 1 4.7089 -3.2928 3.6759 41 1 6.3265 -3.6143 4.3389 42 1 3.8923 -5.4609 4.4447 43 1 4.7172 -4.6769 5.8198 44 1 6.4938 -8.9769 3.0810 45 1 7.7442 -7.9984 3.9186 46 1 5.2891 -9.3492 5.0577 47 1 6.8496 -8.9946 5.8520 48 1 4.8131 -10.3980 7.8122 49 1 7.6270 -5.7482 2.9709 50 1 6.6943 -6.3586 1.5738 51 1 1.6887 -2.1419 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:35 Heat of formation + Delta-G solvation = 16.164718 kcal Electronic energy + Delta-G solvation = -29813.075446 eV Core-core repulsion = 25905.385672 eV Total energy + Delta-G solvation = -3907.689774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.70657 -40.17747 -38.35084 -35.41619 -34.88058 -33.90500 -32.75958 -31.59914 -30.80447 -29.44417 -28.13626 -27.64282 -25.55120 -24.76651 -23.48119 -22.97952 -22.39759 -21.13603 -20.10390 -19.74405 -18.78891 -17.36887 -17.13935 -16.99891 -16.30228 -15.81108 -15.62183 -15.07450 -14.65809 -14.60326 -14.36212 -14.03529 -13.90318 -13.71900 -13.37139 -13.35285 -13.27663 -12.97843 -12.94941 -12.75283 -12.60293 -12.47062 -12.19145 -11.79718 -11.66673 -11.50419 -11.42524 -11.27253 -10.86249 -10.82044 -10.74790 -10.20942 -10.12536 -9.97015 -9.89390 -9.73432 -9.66249 -9.62535 -9.49764 -9.08318 -8.65357 -8.52845 -6.87251 -5.74632 -3.08081 0.77502 0.96963 2.65814 3.02935 3.37124 3.41530 3.43096 3.47561 4.09959 4.32003 4.41871 4.45838 4.61085 4.66287 4.67809 4.80960 4.82131 4.98212 4.98529 5.11236 5.18501 5.20802 5.27534 5.29121 5.34363 5.42914 5.52149 5.55646 5.57041 5.58033 5.66793 5.77262 5.86045 5.86731 5.91597 6.00267 6.03434 6.11957 6.14948 6.20284 6.33161 6.41551 6.47383 6.58164 6.60496 6.80081 7.02957 7.46613 7.51972 7.58592 7.67894 7.77716 8.20616 8.21316 9.16009 9.79683 10.47828 11.37783 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.002321 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.587281 B =12060.937747 C =13432.886970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C 0.090 3.910 4 N -0.480 5.480 5 C 0.094 3.906 6 C -0.126 4.126 7 C -0.061 4.061 8 C -0.136 4.136 9 C 0.511 3.489 10 O -0.550 6.550 11 N -0.608 5.608 12 C 0.112 3.888 13 C -0.131 4.131 14 C 0.168 3.832 15 H 0.019 0.981 16 C -0.124 4.124 17 H 0.078 0.922 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.127 3.873 30 C -0.074 4.074 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.253 0.747 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 17.553 -14.369 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.068 4.068 4 N -0.188 5.188 5 C -0.063 4.063 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.175 4.175 9 C 0.299 3.701 10 O -0.428 6.428 11 N -0.340 5.340 12 C -0.011 4.011 13 C -0.170 4.170 14 C 0.060 3.940 15 H 0.037 0.963 16 C -0.144 4.144 17 H 0.096 0.904 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.006 3.994 30 C -0.100 4.100 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.110 0.890 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.305 17.926 -14.688 23.409 hybrid contribution -1.032 -0.843 1.108 1.733 sum -4.337 17.083 -13.580 22.250 Atomic orbital electron populations 1.20739 0.90163 1.03306 1.02651 1.20959 0.97647 0.94145 1.00971 1.22658 0.89996 0.97454 0.96650 1.67686 1.08353 1.31263 1.11467 1.22691 1.00335 0.87122 0.96131 1.20954 0.94541 0.96769 1.00497 1.20281 1.00313 0.93404 0.95902 1.21701 1.01235 0.96060 0.98548 1.20614 0.79891 0.86042 0.83596 1.90673 1.56350 1.64796 1.30997 1.48470 1.54068 1.25645 1.05859 1.21805 0.99719 0.95591 0.84012 1.21903 0.99907 0.96447 0.98717 1.20601 0.95218 0.89223 0.88994 0.96342 1.22630 0.99697 0.95562 0.96559 0.90370 1.22718 0.98737 0.96111 0.99969 1.21535 0.96424 0.88818 0.87956 1.44197 1.62762 1.02139 1.22804 1.18935 1.26053 0.93927 0.96617 0.90455 1.24796 1.00969 0.95488 0.99146 1.69928 1.49677 0.97970 1.39271 0.86233 0.79860 0.76650 0.83211 1.21204 1.21615 1.21189 1.21685 0.93642 0.82777 1.01328 1.21464 0.93484 0.98367 0.96718 0.90867 0.91142 0.91110 0.83006 0.82810 0.89716 0.89872 0.88748 0.88793 0.90221 0.91574 0.91429 0.90501 0.92060 0.92328 0.92728 0.94350 0.93676 0.91614 0.88970 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.04 36.01 0.36 -0.22 16 2 C -0.14 -1.05 5.90 -104.48 -0.62 -1.67 16 3 C 0.09 0.77 10.86 -17.55 -0.19 0.58 16 4 N -0.48 -5.01 10.36 -13.25 -0.14 -5.15 16 5 C 0.09 0.88 10.86 -17.55 -0.19 0.69 16 6 C -0.13 -1.10 5.15 -104.48 -0.54 -1.64 16 7 C -0.06 -0.55 4.66 -27.88 -0.13 -0.68 16 8 C -0.14 -1.27 4.01 -27.88 -0.11 -1.38 16 9 C 0.51 6.75 7.66 -10.99 -0.08 6.66 16 10 O -0.55 -8.98 15.33 5.56 0.09 -8.89 16 11 N -0.61 -8.24 3.02 -172.15 -0.52 -8.76 16 12 C 0.11 1.37 6.22 -3.50 -0.02 1.34 16 13 C -0.13 -2.09 5.48 -26.98 -0.15 -2.24 16 14 C 0.17 3.25 2.58 -67.98 -0.18 3.07 16 15 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 16 C -0.12 -2.15 2.81 -89.35 -0.25 -2.41 16 17 H 0.08 1.48 8.12 -51.93 -0.42 1.05 16 18 C -0.14 -2.49 6.53 -25.13 -0.16 -2.66 16 19 C 0.18 4.20 5.45 -1.91 -0.01 4.19 16 20 N -0.59 -14.53 3.35 -163.09 -0.55 -15.08 16 21 C -0.23 -6.06 9.88 -15.06 -0.15 -6.21 16 22 H 0.08 1.97 7.21 -52.49 -0.38 1.59 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 24 N -0.92 -26.64 10.44 55.49 0.58 -26.06 16 25 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 29 C 0.13 1.89 5.96 -3.53 -0.02 1.87 16 30 C -0.07 -0.61 9.55 -39.28 -0.37 -0.99 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.09 0.81 7.55 -51.93 -0.39 0.42 16 39 H 0.09 0.75 7.99 -51.93 -0.41 0.33 16 40 H 0.08 0.76 5.84 -51.93 -0.30 0.46 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 43 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 46 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 47 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 50 H 0.09 1.41 7.06 -51.92 -0.37 1.04 16 51 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 400.33 15.07 6.03 6.03 Total: -1.00 -32.35 400.33 -10.92 -43.27 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.48 Total: 0.03 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.91 Total: -2.00 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.62 Total: -55.05 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.35 -10.92 -43.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.431 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds