Wall clock time and date at job start Wed Apr 1 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38220 * 120.42005 * 2 1 4 4 N 1.31861 * 120.76489 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72344 * 359.97438 * 4 3 2 6 6 C 1.38184 * 120.76449 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41404 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46987 * 90.00856 * 7 6 5 9 9 C 1.50702 * 109.46987 * 179.97438 * 8 7 6 10 10 O 1.21276 * 120.00115 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99518 * 179.97438 * 9 8 7 12 12 C 1.46587 * 119.68932 * 359.97438 * 11 9 8 13 13 C 1.53956 * 110.58915 * 132.18590 * 12 11 9 14 14 C 1.51515 * 107.34323 * 51.04562 * 13 12 11 15 15 H 1.09001 * 108.81624 * 53.44916 * 14 13 12 16 16 C 1.55366 * 107.78504 * 295.14651 * 14 13 12 17 17 H 1.09002 * 111.50631 * 308.83655 * 16 14 13 18 18 C 1.53743 * 100.22520 * 190.94111 * 16 14 13 19 19 C 1.55287 * 101.84299 * 39.09063 * 18 16 14 20 20 N 1.45470 * 117.33973 * 178.10727 * 14 13 12 21 21 C 1.36936 * 126.40601 * 329.39931 * 20 14 13 22 22 H 1.07995 * 119.99923 * 359.97253 * 21 20 14 23 23 C 1.38815 * 119.99873 * 179.97438 * 21 20 14 24 24 N 1.31615 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47015 * 60.00039 * 25 23 21 27 27 H 1.48495 * 109.47068 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47147 * 300.00278 * 25 23 21 29 29 C 1.48105 * 119.01867 * 179.45650 * 11 9 8 30 30 C 1.38630 * 120.41752 * 180.29347 * 2 1 3 31 31 H 1.08998 * 109.46708 * 90.00375 * 1 2 3 32 32 H 1.09001 * 109.47324 * 210.00216 * 1 2 3 33 33 H 1.08999 * 109.46974 * 330.00419 * 1 2 3 34 34 H 1.08000 * 119.61937 * 359.97438 * 3 2 1 35 35 H 1.07996 * 119.61626 * 180.02562 * 5 4 3 36 36 H 1.08996 * 109.47428 * 330.00126 * 7 6 5 37 37 H 1.09004 * 109.46869 * 210.00188 * 7 6 5 38 38 H 1.08996 * 109.47633 * 59.99395 * 8 7 6 39 39 H 1.09004 * 109.46771 * 299.99392 * 8 7 6 40 40 H 1.09000 * 109.25567 * 11.90108 * 12 11 9 41 41 H 1.09001 * 109.22726 * 252.45114 * 12 11 9 42 42 H 1.09003 * 109.87952 * 291.59057 * 13 12 11 43 43 H 1.08994 * 109.88506 * 170.50817 * 13 12 11 44 44 H 1.08996 * 110.95294 * 157.22978 * 18 16 14 45 45 H 1.08998 * 110.95326 * 280.95230 * 18 16 14 46 46 H 1.08995 * 109.92218 * 96.86977 * 19 18 16 47 47 H 1.09003 * 109.91963 * 218.17819 * 19 18 16 48 48 H 0.97005 * 120.00046 * 179.97438 * 24 23 21 49 49 H 1.09005 * 108.77781 * 112.83675 * 29 11 9 50 50 H 1.09008 * 111.53725 * 351.16707 * 29 11 9 51 51 H 1.08001 * 120.78772 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4193 -0.0012 8 6 4.6765 -2.8502 1.4412 9 6 5.4839 -4.1227 1.4406 10 8 5.8079 -4.6348 0.3901 11 7 5.8458 -4.6916 2.6075 12 6 5.4508 -4.0665 3.8733 13 6 4.8508 -5.1130 4.8299 14 6 5.8269 -6.2696 4.9038 15 1 6.8109 -5.8828 5.1688 16 6 5.8968 -6.9222 3.4956 17 1 4.9028 -7.1522 3.1119 18 6 6.6778 -8.2043 3.8274 19 6 6.0695 -8.6017 5.1998 20 7 5.4899 -7.3726 5.7903 21 6 4.7705 -7.2905 6.9525 22 1 4.3941 -6.3356 7.2883 23 6 4.5251 -8.4347 7.6992 24 7 4.9843 -9.5984 7.2903 25 14 3.5431 -8.3229 9.2843 26 1 2.1890 -7.7886 8.9910 27 1 3.4226 -9.6741 9.8883 28 1 4.2377 -7.4168 10.2340 29 6 6.6287 -5.9486 2.5817 30 6 2.2089 -1.1955 -0.0061 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6675 2.1276 -0.0004 35 1 5.3047 0.1284 -0.0005 36 1 5.3485 -2.2488 -0.5153 37 1 3.8460 -3.2030 -0.5150 38 1 3.7307 -3.0207 1.9553 39 1 5.2332 -2.0665 1.9550 40 1 4.7089 -3.2928 3.6759 41 1 6.3265 -3.6143 4.3389 42 1 3.8923 -5.4609 4.4447 43 1 4.7172 -4.6769 5.8198 44 1 6.4938 -8.9769 3.0810 45 1 7.7442 -7.9984 3.9186 46 1 5.2891 -9.3492 5.0577 47 1 6.8496 -8.9946 5.8520 48 1 4.8131 -10.3980 7.8122 49 1 7.6270 -5.7482 2.9709 50 1 6.6943 -6.3586 1.5738 51 1 1.6887 -2.1419 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036768892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:34 Heat of formation + Delta-G solvation = -1.803258 kcal Electronic energy + Delta-G solvation = -29813.854596 eV Core-core repulsion = 25905.385672 eV Total energy + Delta-G solvation = -3908.468924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56802 -41.12210 -39.72450 -36.79176 -35.62572 -34.52683 -34.46295 -33.02164 -31.85901 -30.86982 -29.57177 -28.14252 -26.78028 -26.23254 -24.54642 -23.84647 -23.69977 -21.94771 -21.73919 -21.11476 -19.90881 -18.67293 -17.94219 -17.71876 -17.64629 -16.96163 -16.80977 -16.59674 -16.00222 -15.68754 -15.39560 -15.20112 -15.01463 -14.83877 -14.41159 -14.27719 -14.02184 -13.96239 -13.93595 -13.73286 -13.61342 -13.34531 -13.17997 -13.16779 -13.08701 -12.89493 -12.64352 -12.48329 -12.40884 -12.10890 -12.01650 -11.95230 -11.75892 -11.60199 -11.50800 -11.02129 -10.79098 -10.69484 -10.48220 -10.34963 -9.69640 -9.66002 -8.87134 -7.82726 -5.17277 0.16243 0.34895 1.46276 1.49104 1.55113 1.64741 1.99990 2.51133 2.84095 3.35808 3.37147 3.50134 3.65168 3.84915 3.85197 3.86879 3.97034 3.99543 4.07265 4.08473 4.16571 4.20779 4.23435 4.24843 4.40613 4.47848 4.52424 4.61098 4.67264 4.70985 4.74095 4.82707 4.83554 4.85974 4.90324 4.92509 4.98156 5.06874 5.09399 5.16564 5.23384 5.24799 5.35018 5.40553 5.46949 5.54903 5.56442 5.66367 5.76607 5.83091 6.21192 6.43324 7.05322 7.09688 7.17970 7.80356 8.49316 9.29082 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013902 B = 0.002321 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.587281 B =12060.937747 C =13432.886970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C 0.078 3.922 4 N -0.507 5.507 5 C 0.082 3.918 6 C -0.126 4.126 7 C -0.052 4.052 8 C -0.128 4.128 9 C 0.510 3.490 10 O -0.584 6.584 11 N -0.611 5.611 12 C 0.120 3.880 13 C -0.125 4.125 14 C 0.157 3.843 15 H 0.021 0.979 16 C -0.108 4.108 17 H 0.061 0.939 18 C -0.123 4.123 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.229 4.229 22 H 0.089 0.911 23 C -0.072 4.072 24 N -0.955 5.955 25 Si 0.975 3.025 26 H -0.276 1.276 27 H -0.300 1.300 28 H -0.276 1.276 29 C 0.135 3.865 30 C -0.084 4.084 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.003 0.997 48 H 0.244 0.756 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 20.346 -14.882 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.137 4.137 3 C -0.079 4.079 4 N -0.215 5.215 5 C -0.075 4.075 6 C -0.128 4.128 7 C -0.091 4.091 8 C -0.167 4.167 9 C 0.300 3.700 10 O -0.464 6.464 11 N -0.343 5.343 12 C -0.003 4.003 13 C -0.164 4.164 14 C 0.050 3.950 15 H 0.039 0.961 16 C -0.129 4.129 17 H 0.079 0.921 18 C -0.162 4.162 19 C 0.057 3.943 20 N -0.340 5.340 21 C -0.358 4.358 22 H 0.106 0.894 23 C -0.264 4.264 24 N -0.605 5.605 25 Si 0.803 3.197 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.202 1.202 29 C 0.013 3.987 30 C -0.109 4.109 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.182 0.818 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.021 0.979 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.108 0.892 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.057 20.776 -15.214 26.068 hybrid contribution -0.803 -1.692 1.229 2.240 sum -4.859 19.084 -13.985 24.154 Atomic orbital electron populations 1.20790 0.88386 1.04116 1.03403 1.21225 0.98955 0.93649 0.99911 1.23049 0.89744 0.98699 0.96397 1.67692 1.09358 1.31945 1.12475 1.22907 1.01003 0.87148 0.96395 1.20882 0.94751 0.96283 1.00871 1.20159 1.00017 0.93239 0.95673 1.21719 1.01379 0.94449 0.99150 1.21233 0.79337 0.86756 0.82715 1.90665 1.57617 1.65978 1.32160 1.48536 1.53940 1.25191 1.06667 1.21864 1.01205 0.94651 0.82530 1.21834 0.98620 0.96073 0.99871 1.20856 0.96072 0.89254 0.88823 0.96147 1.22452 0.99011 0.95382 0.96011 0.92098 1.22591 0.99545 0.97166 0.96874 1.21298 0.94388 0.88377 0.90269 1.44494 1.62448 1.03883 1.23206 1.19378 1.25058 0.94203 0.97191 0.89359 1.25642 1.02804 0.95392 1.02575 1.70164 1.51530 0.98378 1.40399 0.85200 0.78807 0.76089 0.79562 1.20188 1.22616 1.20237 1.21507 0.94008 0.82865 1.00323 1.21715 0.93502 0.99188 0.96524 0.90049 0.90698 0.89965 0.81224 0.81762 0.90168 0.90807 0.87313 0.86537 0.86761 0.89851 0.92711 0.90610 0.90548 0.90420 0.96571 0.97851 0.94641 0.90353 0.89244 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.04 71.24 0.71 -0.16 16 2 C -0.14 -1.81 5.90 -19.77 -0.12 -1.93 16 3 C 0.08 1.20 10.86 84.68 0.92 2.12 16 4 N -0.51 -9.82 10.36 -195.84 -2.03 -11.85 16 5 C 0.08 1.39 10.86 84.67 0.92 2.31 16 6 C -0.13 -1.95 5.15 -19.77 -0.10 -2.06 16 7 C -0.05 -0.84 4.66 29.85 0.14 -0.70 16 8 C -0.13 -1.97 4.01 29.85 0.12 -1.85 16 9 C 0.51 12.13 7.66 87.66 0.67 12.80 16 10 O -0.58 -18.11 15.33 -3.02 -0.05 -18.16 16 11 N -0.61 -14.83 3.02 -816.95 -2.46 -17.29 16 12 C 0.12 2.49 6.22 86.69 0.54 3.02 16 13 C -0.12 -3.75 5.48 30.43 0.17 -3.58 16 14 C 0.16 5.91 2.58 45.51 0.12 6.03 16 15 H 0.02 0.80 7.96 -2.39 -0.02 0.78 16 16 C -0.11 -3.66 2.81 -9.97 -0.03 -3.69 16 17 H 0.06 2.28 8.12 -2.39 -0.02 2.26 16 18 C -0.12 -4.47 6.53 31.63 0.21 -4.26 16 19 C 0.18 8.97 5.45 86.84 0.47 9.44 16 20 N -0.62 -30.58 3.35 -669.89 -2.24 -32.82 16 21 C -0.23 -12.37 9.88 84.03 0.83 -11.54 16 22 H 0.09 4.44 7.21 -2.91 -0.02 4.42 16 23 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 24 N -0.96 -57.62 10.44 21.65 0.23 -57.40 16 25 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 29 C 0.14 3.74 5.96 85.83 0.51 4.25 16 30 C -0.08 -1.20 9.55 22.47 0.21 -0.98 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.54 8.10 -2.39 -0.02 0.52 16 33 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 37 H 0.07 1.33 8.05 -2.38 -0.02 1.31 16 38 H 0.11 1.43 7.55 -2.39 -0.02 1.42 16 39 H 0.12 1.34 7.99 -2.38 -0.02 1.32 16 40 H 0.11 1.64 5.84 -2.39 -0.01 1.62 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 43 H 0.08 2.29 7.62 -2.39 -0.02 2.28 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.08 2.53 8.12 -2.39 -0.02 2.52 16 46 H 0.02 0.90 7.21 -2.39 -0.02 0.88 16 47 H 0.00 0.18 7.77 -2.39 -0.02 0.16 16 48 H 0.24 14.47 8.31 -92.70 -0.77 13.70 16 49 H 0.08 2.00 8.10 -2.38 -0.02 1.98 16 50 H 0.09 2.58 7.06 -2.38 -0.02 2.56 16 51 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -72.96 400.33 3.14 -69.82 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.91 Total: 14.88 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.76 Total: 5.67 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -6.51 Total: -119.36 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.96 3.14 -69.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.018 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds