Wall clock time and date at job start Wed Apr 1 2020 02:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76204 * 179.77181 * 3 2 1 5 5 C 1.31879 * 121.72754 * 0.49754 * 4 3 2 6 6 C 1.38179 * 120.76608 * 359.76987 * 5 4 3 7 7 C 1.50703 * 120.42157 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47077 * 269.98164 * 7 6 5 9 9 C 1.50703 * 109.47077 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00088 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00304 * 180.02562 * 9 8 7 12 12 C 1.46600 * 119.68128 * 359.97438 * 11 9 8 13 13 C 1.53952 * 110.57511 * 227.82822 * 12 11 9 14 14 C 1.51511 * 107.34993 * 308.94971 * 13 12 11 15 15 H 1.09008 * 109.27531 * 306.97772 * 14 13 12 16 16 C 1.55371 * 107.79502 * 64.85303 * 14 13 12 17 17 H 1.08996 * 111.51056 * 51.19092 * 16 14 13 18 18 C 1.53749 * 100.21680 * 169.09190 * 16 14 13 19 19 C 1.55287 * 101.84402 * 320.91003 * 18 16 14 20 20 N 1.45460 * 117.35700 * 181.91347 * 14 13 12 21 21 C 1.36936 * 126.40654 * 30.61337 * 20 14 13 22 22 H 1.08005 * 119.99971 * 0.02562 * 21 20 14 23 23 C 1.38813 * 120.00080 * 180.02562 * 21 20 14 24 24 N 1.31616 * 119.99961 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47551 * 59.99858 * 25 23 21 27 27 H 1.48505 * 109.47064 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47275 * 299.99644 * 25 23 21 29 29 C 1.47718 * 119.68478 * 179.72575 * 11 9 8 30 30 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 34 34 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 35 35 H 1.07997 * 119.61888 * 179.74900 * 5 4 3 36 36 H 1.08999 * 109.46692 * 29.98163 * 7 6 5 37 37 H 1.08998 * 109.46915 * 149.97545 * 7 6 5 38 38 H 1.08999 * 109.47359 * 299.99591 * 8 7 6 39 39 H 1.08998 * 109.47754 * 59.99894 * 8 7 6 40 40 H 1.09002 * 109.25622 * 348.11348 * 12 11 9 41 41 H 1.09000 * 109.25221 * 107.54930 * 12 11 9 42 42 H 1.09008 * 109.87835 * 68.40998 * 13 12 11 43 43 H 1.08997 * 109.87954 * 189.48394 * 13 12 11 44 44 H 1.09001 * 110.94896 * 202.77141 * 18 16 14 45 45 H 1.08998 * 110.95432 * 79.05217 * 18 16 14 46 46 H 1.09008 * 109.91849 * 263.13522 * 19 18 16 47 47 H 1.08995 * 109.91993 * 141.83127 * 19 18 16 48 48 H 0.97006 * 119.99807 * 179.97438 * 24 23 21 49 49 H 1.08994 * 110.06861 * 247.15051 * 29 11 9 50 50 H 1.09001 * 110.06703 * 8.72615 * 29 11 9 51 51 H 1.08005 * 120.78766 * 359.95426 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0045 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 4.4027 -2.4193 -0.0125 8 6 4.6750 -2.8432 -1.4571 9 6 5.4823 -4.1158 -1.4634 10 8 5.8082 -4.6325 -0.4157 11 7 5.8431 -4.6792 -2.6335 12 6 5.4460 -4.0484 -3.8959 13 6 4.8452 -5.0911 -4.8561 14 6 5.8217 -6.2467 -4.9367 15 1 6.8100 -5.8654 -5.1939 16 6 5.8945 -6.9058 -3.5315 17 1 4.9013 -7.1385 -3.1474 18 6 6.6764 -8.1854 -3.8706 19 6 6.0665 -8.5771 -5.2440 20 7 5.4845 -7.3459 -5.8277 21 6 4.7639 -7.2591 -6.9889 22 1 4.3865 -6.3028 -7.3200 23 6 4.5185 -8.4001 -7.7404 24 7 4.9788 -9.5653 -7.3371 25 14 3.5360 -8.2815 -9.3247 26 1 4.2302 -7.3713 -10.2707 27 1 3.4154 -9.6301 -9.9345 28 1 2.1818 -7.7487 -9.0287 29 6 6.6396 -5.9232 -2.6315 30 6 2.2090 -1.1954 -0.0059 31 1 -0.3633 -0.0051 1.0277 32 1 -0.3633 -0.8875 -0.5182 33 1 -0.3633 0.8925 -0.5095 34 1 1.6675 2.1277 0.0005 35 1 5.3046 0.1285 -0.0007 36 1 5.3491 -2.2512 0.5015 37 1 3.8465 -3.2054 0.4982 38 1 3.7286 -3.0113 -1.9710 39 1 5.2312 -2.0571 -1.9678 40 1 4.7039 -3.2760 -3.6940 41 1 6.3205 -3.5933 -4.3609 42 1 3.8875 -5.4412 -4.4709 43 1 4.7098 -4.6506 -5.8439 44 1 6.4944 -8.9618 -3.1275 45 1 7.7425 -7.9779 -3.9624 46 1 5.2870 -9.3261 -5.1041 47 1 6.8459 -8.9662 -5.8990 48 1 4.8069 -10.3627 -7.8621 49 1 7.6361 -5.7299 -3.0285 50 1 6.7097 -6.3209 -1.6190 51 1 1.6888 -2.1420 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:39 Heat of formation + Delta-G solvation = 16.046079 kcal Electronic energy + Delta-G solvation = -29814.496902 eV Core-core repulsion = 25906.801983 eV Total energy + Delta-G solvation = -3907.694918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.71109 -40.18823 -38.35509 -35.43109 -34.88416 -33.90619 -32.74892 -31.58750 -30.80773 -29.43851 -28.13198 -27.64362 -25.55893 -24.75620 -23.48854 -22.98281 -22.39472 -21.13505 -20.09995 -19.74588 -18.80378 -17.37320 -17.14207 -17.00096 -16.30363 -15.82473 -15.62474 -15.07546 -14.65598 -14.61183 -14.34997 -14.02945 -13.89840 -13.72327 -13.37267 -13.35400 -13.26865 -12.97849 -12.93788 -12.75232 -12.59734 -12.46784 -12.19059 -11.79793 -11.66585 -11.50808 -11.43046 -11.27547 -10.86295 -10.82332 -10.75021 -10.20890 -10.12526 -9.97123 -9.89509 -9.73994 -9.66072 -9.63070 -9.48070 -9.08536 -8.65193 -8.53033 -6.86968 -5.74473 -3.07884 0.77375 0.96873 2.65285 3.03113 3.37213 3.41627 3.43163 3.47539 4.09932 4.31983 4.41770 4.46014 4.60876 4.66190 4.67706 4.81003 4.81826 4.98145 4.98506 5.11192 5.18446 5.20550 5.27316 5.29742 5.34393 5.42758 5.52162 5.55036 5.56869 5.58408 5.66651 5.77620 5.86101 5.86735 5.91505 6.00564 6.03273 6.12202 6.15429 6.20420 6.32747 6.41437 6.46468 6.58949 6.61053 6.80689 7.03396 7.46493 7.52132 7.58791 7.67830 7.77866 8.20345 8.21481 9.16197 9.79896 10.48066 11.37953 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.002321 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.005882 B =12060.315308 C =13432.349613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C 0.090 3.910 4 N -0.480 5.480 5 C 0.094 3.906 6 C -0.126 4.126 7 C -0.061 4.061 8 C -0.135 4.135 9 C 0.512 3.488 10 O -0.549 6.549 11 N -0.607 5.607 12 C 0.110 3.890 13 C -0.129 4.129 14 C 0.167 3.833 15 H 0.019 0.981 16 C -0.124 4.124 17 H 0.079 0.921 18 C -0.137 4.137 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.126 3.874 30 C -0.074 4.074 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.253 0.747 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 17.543 14.432 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.067 4.067 4 N -0.188 5.188 5 C -0.063 4.063 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.175 4.175 9 C 0.300 3.700 10 O -0.428 6.428 11 N -0.340 5.340 12 C -0.013 4.013 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.036 0.964 16 C -0.145 4.145 17 H 0.097 0.903 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.004 3.996 30 C -0.100 4.100 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.108 0.892 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.292 17.911 14.763 23.444 hybrid contribution -1.019 -0.840 -1.113 1.727 sum -4.311 17.071 13.651 22.279 Atomic orbital electron populations 1.20741 0.90160 1.03305 1.02655 1.20960 0.97648 0.94145 1.00970 1.22659 0.89994 0.97455 0.96640 1.67679 1.08357 1.31268 1.11469 1.22687 1.00335 0.87121 0.96130 1.20951 0.94541 0.96763 1.00511 1.20279 1.00325 0.93436 0.95864 1.21695 1.01248 0.96011 0.98541 1.20603 0.79939 0.86005 0.83471 1.90676 1.56355 1.64479 1.31274 1.48346 1.53485 1.26258 1.05863 1.21819 0.99726 0.95577 0.84209 1.21882 0.99869 0.96436 0.98668 1.20632 0.95174 0.89301 0.89024 0.96361 1.22726 0.99590 0.95445 0.96697 0.90262 1.22720 0.98728 0.96157 0.99940 1.21535 0.96389 0.88807 0.88003 1.44197 1.62630 1.02242 1.22837 1.18937 1.25978 0.93969 0.96643 0.90458 1.24796 1.00973 0.95496 0.99142 1.69929 1.49634 0.98023 1.39265 0.86234 0.79859 0.76650 0.83213 1.21193 1.21617 1.21205 1.21698 0.93485 0.82980 1.01409 1.21464 0.93485 0.98369 0.96711 0.90864 0.91141 0.91110 0.83003 0.82811 0.89712 0.89859 0.88729 0.88772 0.90244 0.91594 0.91408 0.90511 0.92068 0.92341 0.92728 0.94360 0.93680 0.91358 0.89248 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.04 36.01 0.36 -0.22 16 2 C -0.14 -1.05 5.90 -104.48 -0.62 -1.67 16 3 C 0.09 0.77 10.86 -17.55 -0.19 0.58 16 4 N -0.48 -5.00 10.36 -13.26 -0.14 -5.14 16 5 C 0.09 0.88 10.86 -17.55 -0.19 0.69 16 6 C -0.13 -1.10 5.15 -104.48 -0.54 -1.64 16 7 C -0.06 -0.55 4.66 -27.89 -0.13 -0.68 16 8 C -0.14 -1.26 4.01 -27.89 -0.11 -1.38 16 9 C 0.51 6.76 7.67 -10.98 -0.08 6.67 16 10 O -0.55 -8.98 15.34 5.56 0.09 -8.90 16 11 N -0.61 -8.22 2.99 -172.23 -0.52 -8.74 16 12 C 0.11 1.34 6.21 -3.49 -0.02 1.32 16 13 C -0.13 -2.07 5.48 -26.99 -0.15 -2.22 16 14 C 0.17 3.23 2.57 -67.98 -0.17 3.05 16 15 H 0.02 0.38 7.90 -51.92 -0.41 -0.03 16 16 C -0.12 -2.16 2.88 -89.14 -0.26 -2.41 16 17 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 18 C -0.14 -2.50 6.54 -25.13 -0.16 -2.66 16 19 C 0.18 4.20 5.45 -1.91 -0.01 4.19 16 20 N -0.59 -14.54 3.35 -163.09 -0.55 -15.08 16 21 C -0.23 -6.06 9.88 -15.06 -0.15 -6.21 16 22 H 0.08 1.97 7.21 -52.48 -0.38 1.59 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.65 10.44 55.49 0.58 -26.07 16 25 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.13 1.87 5.98 -3.55 -0.02 1.85 16 30 C -0.07 -0.61 9.55 -39.28 -0.37 -0.99 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.09 0.81 7.55 -51.93 -0.39 0.42 16 39 H 0.09 0.75 7.99 -51.93 -0.41 0.33 16 40 H 0.08 0.76 5.84 -51.93 -0.30 0.46 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.15 8.12 -51.92 -0.42 0.73 16 43 H 0.08 1.24 7.62 -51.93 -0.40 0.85 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 46 H 0.05 1.45 7.21 -51.92 -0.37 1.07 16 47 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.07 0.96 8.06 -51.93 -0.42 0.55 16 50 H 0.09 1.38 6.99 -51.93 -0.36 1.01 16 51 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -32.38 400.23 -10.91 -43.29 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.47 Total: 0.02 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.92 Total: -2.03 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.62 Total: -55.03 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.38 -10.91 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.334 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds