Wall clock time and date at job start Wed Apr 1 2020 02:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38224 * 120.42070 * 2 1 4 4 N 1.31855 * 120.76204 * 179.77181 * 3 2 1 5 5 C 1.31879 * 121.72754 * 0.49754 * 4 3 2 6 6 C 1.38179 * 120.76608 * 359.76987 * 5 4 3 7 7 C 1.50703 * 120.42157 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47077 * 269.98164 * 7 6 5 9 9 C 1.50703 * 109.47077 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00088 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00304 * 180.02562 * 9 8 7 12 12 C 1.46600 * 119.68128 * 359.97438 * 11 9 8 13 13 C 1.53952 * 110.57511 * 227.82822 * 12 11 9 14 14 C 1.51511 * 107.34993 * 308.94971 * 13 12 11 15 15 H 1.09008 * 109.27531 * 306.97772 * 14 13 12 16 16 C 1.55371 * 107.79502 * 64.85303 * 14 13 12 17 17 H 1.08996 * 111.51056 * 51.19092 * 16 14 13 18 18 C 1.53749 * 100.21680 * 169.09190 * 16 14 13 19 19 C 1.55287 * 101.84402 * 320.91003 * 18 16 14 20 20 N 1.45460 * 117.35700 * 181.91347 * 14 13 12 21 21 C 1.36936 * 126.40654 * 30.61337 * 20 14 13 22 22 H 1.08005 * 119.99971 * 0.02562 * 21 20 14 23 23 C 1.38813 * 120.00080 * 180.02562 * 21 20 14 24 24 N 1.31616 * 119.99961 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47551 * 59.99858 * 25 23 21 27 27 H 1.48505 * 109.47064 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47275 * 299.99644 * 25 23 21 29 29 C 1.47718 * 119.68478 * 179.72575 * 11 9 8 30 30 C 1.38630 * 120.42049 * 180.28399 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.71769 * 1 2 3 32 32 H 1.09001 * 109.46980 * 149.71869 * 1 2 3 33 33 H 1.09004 * 109.47113 * 29.71850 * 1 2 3 34 34 H 1.08005 * 119.61789 * 0.03134 * 3 2 1 35 35 H 1.07997 * 119.61888 * 179.74900 * 5 4 3 36 36 H 1.08999 * 109.46692 * 29.98163 * 7 6 5 37 37 H 1.08998 * 109.46915 * 149.97545 * 7 6 5 38 38 H 1.08999 * 109.47359 * 299.99591 * 8 7 6 39 39 H 1.08998 * 109.47754 * 59.99894 * 8 7 6 40 40 H 1.09002 * 109.25622 * 348.11348 * 12 11 9 41 41 H 1.09000 * 109.25221 * 107.54930 * 12 11 9 42 42 H 1.09008 * 109.87835 * 68.40998 * 13 12 11 43 43 H 1.08997 * 109.87954 * 189.48394 * 13 12 11 44 44 H 1.09001 * 110.94896 * 202.77141 * 18 16 14 45 45 H 1.08998 * 110.95432 * 79.05217 * 18 16 14 46 46 H 1.09008 * 109.91849 * 263.13522 * 19 18 16 47 47 H 1.08995 * 109.91993 * 141.83127 * 19 18 16 48 48 H 0.97006 * 119.99807 * 179.97438 * 24 23 21 49 49 H 1.08994 * 110.06861 * 247.15051 * 29 11 9 50 50 H 1.09001 * 110.06703 * 8.72615 * 29 11 9 51 51 H 1.08005 * 120.78766 * 359.95426 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0045 5 6 4.2257 0.0823 -0.0006 6 6 3.5948 -1.1471 -0.0061 7 6 4.4027 -2.4193 -0.0125 8 6 4.6750 -2.8432 -1.4571 9 6 5.4823 -4.1158 -1.4634 10 8 5.8082 -4.6325 -0.4157 11 7 5.8431 -4.6792 -2.6335 12 6 5.4460 -4.0484 -3.8959 13 6 4.8452 -5.0911 -4.8561 14 6 5.8217 -6.2467 -4.9367 15 1 6.8100 -5.8654 -5.1939 16 6 5.8945 -6.9058 -3.5315 17 1 4.9013 -7.1385 -3.1474 18 6 6.6764 -8.1854 -3.8706 19 6 6.0665 -8.5771 -5.2440 20 7 5.4845 -7.3459 -5.8277 21 6 4.7639 -7.2591 -6.9889 22 1 4.3865 -6.3028 -7.3200 23 6 4.5185 -8.4001 -7.7404 24 7 4.9788 -9.5653 -7.3371 25 14 3.5360 -8.2815 -9.3247 26 1 4.2302 -7.3713 -10.2707 27 1 3.4154 -9.6301 -9.9345 28 1 2.1818 -7.7487 -9.0287 29 6 6.6396 -5.9232 -2.6315 30 6 2.2090 -1.1954 -0.0059 31 1 -0.3633 -0.0051 1.0277 32 1 -0.3633 -0.8875 -0.5182 33 1 -0.3633 0.8925 -0.5095 34 1 1.6675 2.1277 0.0005 35 1 5.3046 0.1285 -0.0007 36 1 5.3491 -2.2512 0.5015 37 1 3.8465 -3.2054 0.4982 38 1 3.7286 -3.0113 -1.9710 39 1 5.2312 -2.0571 -1.9678 40 1 4.7039 -3.2760 -3.6940 41 1 6.3205 -3.5933 -4.3609 42 1 3.8875 -5.4412 -4.4709 43 1 4.7098 -4.6506 -5.8439 44 1 6.4944 -8.9618 -3.1275 45 1 7.7425 -7.9779 -3.9624 46 1 5.2870 -9.3261 -5.1041 47 1 6.8459 -8.9662 -5.8990 48 1 4.8069 -10.3627 -7.8621 49 1 7.6361 -5.7299 -3.0285 50 1 6.7097 -6.3209 -1.6190 51 1 1.6888 -2.1420 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036768893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:38 Heat of formation + Delta-G solvation = -1.940860 kcal Electronic energy + Delta-G solvation = -29815.276874 eV Core-core repulsion = 25906.801983 eV Total energy + Delta-G solvation = -3908.474890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57752 -41.12606 -39.72770 -36.80688 -35.62784 -34.52168 -34.46281 -33.00517 -31.85797 -30.87101 -29.56356 -28.14224 -26.77722 -26.23820 -24.55025 -23.84336 -23.69581 -21.94218 -21.73930 -21.12318 -19.92030 -18.67380 -17.94536 -17.72151 -17.64708 -16.97737 -16.80898 -16.59877 -15.98803 -15.68393 -15.39751 -15.20454 -15.01188 -14.83338 -14.40781 -14.26099 -14.01750 -13.95962 -13.93487 -13.73372 -13.61373 -13.33879 -13.18421 -13.16670 -13.09303 -12.89252 -12.64701 -12.48410 -12.41037 -12.10881 -12.02050 -11.95304 -11.75984 -11.60101 -11.51253 -11.00866 -10.79345 -10.69287 -10.48500 -10.34850 -9.69698 -9.66365 -8.86848 -7.82614 -5.17116 0.16255 0.34950 1.46325 1.49155 1.55132 1.64360 2.00338 2.51249 2.84188 3.36031 3.37198 3.50167 3.65225 3.84766 3.85540 3.87233 3.96839 4.00344 4.07200 4.08499 4.16659 4.20767 4.24273 4.24800 4.40172 4.47714 4.52373 4.60885 4.67537 4.70944 4.74211 4.82906 4.83822 4.86007 4.90372 4.93014 4.98157 5.05925 5.09161 5.16554 5.23562 5.24813 5.35044 5.40554 5.47247 5.55240 5.57250 5.66507 5.76772 5.83122 6.21345 6.43262 7.05401 7.09822 7.17681 7.80544 8.49530 9.29215 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.002321 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.005882 B =12060.315308 C =13432.349613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C 0.078 3.922 4 N -0.507 5.507 5 C 0.082 3.918 6 C -0.126 4.126 7 C -0.052 4.052 8 C -0.127 4.127 9 C 0.511 3.489 10 O -0.584 6.584 11 N -0.610 5.610 12 C 0.118 3.882 13 C -0.124 4.124 14 C 0.156 3.844 15 H 0.021 0.979 16 C -0.109 4.109 17 H 0.061 0.939 18 C -0.123 4.123 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.229 4.229 22 H 0.089 0.911 23 C -0.072 4.072 24 N -0.955 5.955 25 Si 0.975 3.025 26 H -0.276 1.276 27 H -0.300 1.300 28 H -0.276 1.276 29 C 0.135 3.865 30 C -0.083 4.083 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.003 0.997 48 H 0.244 0.756 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 20.352 14.942 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.137 4.137 3 C -0.079 4.079 4 N -0.215 5.215 5 C -0.074 4.074 6 C -0.128 4.128 7 C -0.091 4.091 8 C -0.166 4.166 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.343 5.343 12 C -0.004 4.004 13 C -0.163 4.163 14 C 0.049 3.951 15 H 0.039 0.961 16 C -0.129 4.129 17 H 0.080 0.920 18 C -0.162 4.162 19 C 0.057 3.943 20 N -0.340 5.340 21 C -0.358 4.358 22 H 0.106 0.894 23 C -0.264 4.264 24 N -0.605 5.605 25 Si 0.803 3.197 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.202 1.202 29 C 0.012 3.988 30 C -0.109 4.109 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.182 0.818 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.021 0.979 48 H 0.054 0.946 49 H 0.100 0.900 50 H 0.104 0.896 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.033 20.777 15.286 26.108 hybrid contribution -0.794 -1.695 -1.231 2.240 sum -4.827 19.082 14.055 24.187 Atomic orbital electron populations 1.20791 0.88387 1.04120 1.03399 1.21226 0.98954 0.93651 0.99913 1.23050 0.89743 0.98698 0.96389 1.67685 1.09361 1.31951 1.12476 1.22904 1.01005 0.87146 0.96391 1.20879 0.94750 0.96277 1.00883 1.20157 1.00029 0.93267 0.95641 1.21714 1.01397 0.94392 0.99137 1.21231 0.79383 0.86714 0.82587 1.90667 1.57636 1.65674 1.32443 1.48412 1.53341 1.25821 1.06677 1.21875 1.01219 0.94639 0.82715 1.21814 0.98583 0.96056 0.99834 1.20891 0.96039 0.89353 0.88809 0.96126 1.22552 0.98913 0.95282 0.96159 0.92013 1.22592 0.99544 0.97217 0.96833 1.21298 0.94359 0.88359 0.90312 1.44494 1.62317 1.03976 1.23244 1.19381 1.24980 0.94246 0.97207 0.89353 1.25642 1.02815 0.95403 1.02568 1.70166 1.51491 0.98441 1.40386 0.85201 0.78808 0.76088 0.79563 1.20239 1.22628 1.20185 1.21518 0.93847 0.83043 1.00391 1.21716 0.93503 0.99188 0.96517 0.90056 0.90695 0.89961 0.81224 0.81759 0.90162 0.90801 0.87284 0.86499 0.86782 0.89849 0.92699 0.90613 0.90594 0.90412 0.96586 0.97855 0.94648 0.90029 0.89603 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.04 71.24 0.72 -0.15 16 2 C -0.14 -1.81 5.90 -19.77 -0.12 -1.93 16 3 C 0.08 1.20 10.86 84.69 0.92 2.12 16 4 N -0.51 -9.80 10.36 -195.85 -2.03 -11.83 16 5 C 0.08 1.39 10.86 84.67 0.92 2.31 16 6 C -0.13 -1.95 5.15 -19.77 -0.10 -2.05 16 7 C -0.05 -0.84 4.66 29.85 0.14 -0.70 16 8 C -0.13 -1.95 4.01 29.85 0.12 -1.84 16 9 C 0.51 12.15 7.67 87.66 0.67 12.82 16 10 O -0.58 -18.14 15.34 -3.04 -0.05 -18.18 16 11 N -0.61 -14.80 2.99 -817.20 -2.45 -17.24 16 12 C 0.12 2.44 6.21 86.68 0.54 2.98 16 13 C -0.12 -3.71 5.48 30.43 0.17 -3.55 16 14 C 0.16 5.88 2.57 45.51 0.12 5.99 16 15 H 0.02 0.80 7.90 -2.38 -0.02 0.78 16 16 C -0.11 -3.68 2.88 -9.84 -0.03 -3.71 16 17 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 18 C -0.12 -4.48 6.54 31.63 0.21 -4.27 16 19 C 0.18 8.97 5.45 86.84 0.47 9.45 16 20 N -0.62 -30.58 3.35 -669.90 -2.24 -32.82 16 21 C -0.23 -12.36 9.88 84.03 0.83 -11.53 16 22 H 0.09 4.44 7.21 -2.91 -0.02 4.42 16 23 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 24 N -0.96 -57.66 10.44 21.65 0.23 -57.43 16 25 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 27 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 C 0.13 3.71 5.98 86.04 0.51 4.23 16 30 C -0.08 -1.19 9.55 22.47 0.21 -0.98 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.54 8.10 -2.39 -0.02 0.52 16 33 H 0.08 0.47 8.09 -2.38 -0.02 0.45 16 34 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 37 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.11 1.43 7.55 -2.39 -0.02 1.41 16 39 H 0.12 1.33 7.99 -2.39 -0.02 1.32 16 40 H 0.11 1.63 5.84 -2.39 -0.01 1.61 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.78 8.12 -2.38 -0.02 1.76 16 43 H 0.08 2.29 7.62 -2.39 -0.02 2.27 16 44 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.08 2.54 8.11 -2.39 -0.02 2.52 16 46 H 0.02 0.89 7.21 -2.38 -0.02 0.87 16 47 H 0.00 0.18 7.77 -2.39 -0.02 0.16 16 48 H 0.24 14.47 8.31 -92.70 -0.77 13.70 16 49 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 50 H 0.09 2.49 6.99 -2.39 -0.02 2.47 16 51 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -73.06 400.23 3.16 -69.90 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.91 Total: 14.83 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.77 Total: 5.62 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -6.49 Total: -119.33 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.06 3.16 -69.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.958 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds