Wall clock time and date at job start Wed Apr 1 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38228 * 120.41478 * 2 1 4 4 N 1.31857 * 120.76148 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72599 * 359.97438 * 4 3 2 6 6 C 1.38186 * 120.76285 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.41496 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 89.99848 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.47136 * 121.01358 * 0.02562 * 11 9 8 13 13 C 1.53045 * 107.68441 * 122.55622 * 12 11 9 14 14 C 1.51144 * 111.11348 * 54.40034 * 13 12 11 15 15 H 1.08999 * 108.45672 * 185.38949 * 14 13 12 16 16 C 1.53992 * 113.17326 * 304.88279 * 14 13 12 17 17 H 1.09003 * 112.71497 * 284.03612 * 16 14 13 18 18 C 1.56006 * 100.38968 * 163.66314 * 16 14 13 19 19 C 1.54504 * 102.62499 * 323.14358 * 18 16 14 20 20 N 1.46472 * 113.23184 * 65.10415 * 14 13 12 21 21 C 1.36936 * 126.05349 * 29.47773 * 20 14 13 22 22 H 1.07998 * 120.00205 * 0.02562 * 21 20 14 23 23 C 1.38815 * 119.99278 * 179.97438 * 21 20 14 24 24 N 1.31612 * 120.00282 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99390 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47027 * 90.00220 * 25 23 21 27 27 H 1.48507 * 109.46809 * 209.99965 * 25 23 21 28 28 H 1.48496 * 109.47381 * 329.99901 * 25 23 21 29 29 C 1.46525 * 121.00746 * 179.72165 * 11 9 8 30 30 C 1.38627 * 120.41947 * 180.29574 * 2 1 3 31 31 H 1.09000 * 109.47193 * 90.00835 * 1 2 3 32 32 H 1.09007 * 109.46810 * 209.99835 * 1 2 3 33 33 H 1.08999 * 109.47241 * 330.00178 * 1 2 3 34 34 H 1.07994 * 119.61994 * 359.97438 * 3 2 1 35 35 H 1.07994 * 119.61666 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47120 * 329.99601 * 7 6 5 37 37 H 1.08998 * 109.46862 * 210.00403 * 7 6 5 38 38 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 39 39 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 40 40 H 1.08997 * 109.81748 * 242.09938 * 12 11 9 41 41 H 1.08999 * 109.82320 * 3.01101 * 12 11 9 42 42 H 1.09009 * 109.15197 * 174.81851 * 13 12 11 43 43 H 1.09001 * 109.15392 * 294.03174 * 13 12 11 44 44 H 1.09003 * 110.78359 * 204.86083 * 18 16 14 45 45 H 1.09003 * 110.94221 * 81.50253 * 18 16 14 46 46 H 1.09002 * 109.89973 * 263.45353 * 19 18 16 47 47 H 1.08996 * 110.05326 * 142.29345 * 19 18 16 48 48 H 0.96998 * 119.99664 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.35592 * 355.83383 * 29 11 9 50 50 H 1.09004 * 109.34428 * 115.38661 * 29 11 9 51 51 H 1.08001 * 120.79226 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 -0.0005 6 6 3.5948 -1.1470 -0.0005 7 6 4.4028 -2.4191 -0.0012 8 6 4.6769 -2.8500 1.4411 9 6 5.4843 -4.1224 1.4404 10 8 5.8089 -4.6340 0.3898 11 7 5.8464 -4.6913 2.6074 12 6 5.4651 -4.0894 3.8947 13 6 4.6754 -5.1375 4.6822 14 6 5.4570 -6.4248 4.8108 15 1 4.8210 -7.1681 5.2915 16 6 5.9068 -6.9987 3.4545 17 1 5.0935 -7.4782 2.9097 18 6 7.0002 -8.0073 3.9245 19 6 7.6605 -7.2631 5.1066 20 7 6.6796 -6.2816 5.6047 21 6 6.8766 -5.3931 6.6279 22 1 6.0866 -4.7144 6.9134 23 6 8.0916 -5.3657 7.2987 24 7 9.0538 -6.1938 6.9517 25 14 8.3602 -4.1541 8.6950 26 1 7.9486 -4.7784 9.9781 27 1 9.7976 -3.7868 8.7619 28 1 7.5482 -2.9343 8.4551 29 6 6.6262 -5.9316 2.6325 30 6 2.2090 -1.1954 -0.0062 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6674 2.1276 -0.0004 35 1 5.3047 0.1287 -0.0014 36 1 5.3486 -2.2485 -0.5154 37 1 3.8461 -3.2027 -0.5150 38 1 3.7310 -3.0205 1.9553 39 1 5.2336 -2.0662 1.9548 40 1 6.3595 -3.8068 4.4498 41 1 4.8433 -3.2110 3.7223 42 1 4.4597 -4.7492 5.6777 43 1 3.7368 -5.3400 4.1664 44 1 7.7241 -8.1909 3.1304 45 1 6.5501 -8.9420 4.2589 46 1 8.5594 -6.7492 4.7659 47 1 7.9139 -7.9687 5.8977 48 1 9.9029 -6.1744 7.4203 49 1 6.7617 -6.2938 1.6135 50 1 7.6022 -5.7355 3.0766 51 1 1.6889 -2.1419 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:43 Heat of formation + Delta-G solvation = 14.782274 kcal Electronic energy + Delta-G solvation = -30363.918100 eV Core-core repulsion = 26456.168379 eV Total energy + Delta-G solvation = -3907.749721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.62707 -40.07109 -38.32857 -35.03772 -34.77445 -33.85819 -32.84301 -31.64751 -30.62063 -29.23585 -27.69470 -27.57634 -25.80678 -24.77862 -23.67339 -23.07577 -22.54772 -21.07632 -20.07834 -19.45566 -18.16220 -17.26222 -16.95902 -16.93195 -16.37408 -15.73855 -15.40596 -15.13073 -14.70498 -14.56099 -14.28603 -13.99131 -13.72976 -13.69364 -13.34378 -13.30351 -13.19916 -12.90729 -12.81266 -12.61249 -12.54254 -12.19741 -12.09549 -11.70433 -11.55448 -11.42228 -11.18195 -11.11365 -11.05395 -10.82074 -10.68109 -10.19383 -10.06246 -9.94400 -9.86312 -9.66921 -9.66728 -9.64111 -9.48206 -9.01877 -8.64091 -8.19940 -6.85939 -5.75898 -3.08768 0.83494 1.02545 2.83728 3.27347 3.35726 3.40621 3.43289 3.55110 4.17532 4.42585 4.44639 4.46663 4.70440 4.71822 4.75334 4.90653 4.94263 5.09156 5.14373 5.20378 5.25021 5.31146 5.34647 5.42457 5.48542 5.49962 5.55348 5.58850 5.62585 5.72924 5.75262 5.86945 5.93666 5.97794 6.01487 6.10346 6.11235 6.24553 6.28986 6.33352 6.41663 6.47584 6.52157 6.68266 6.74599 6.86803 6.92783 7.52327 7.58093 7.74229 7.76538 7.78389 8.20691 8.40588 9.16414 9.78743 10.46420 11.36163 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.002631 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.532614 B =10641.578254 C =11690.275086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.089 3.911 4 N -0.480 5.480 5 C 0.095 3.905 6 C -0.124 4.124 7 C -0.060 4.060 8 C -0.133 4.133 9 C 0.512 3.488 10 O -0.556 6.556 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.128 4.128 14 C 0.170 3.830 15 H 0.017 0.983 16 C -0.116 4.116 17 H 0.076 0.924 18 C -0.142 4.142 19 C 0.176 3.824 20 N -0.593 5.593 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.126 3.874 30 C -0.075 4.075 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.042 0.958 48 H 0.252 0.748 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.598 8.272 -12.998 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.068 4.068 4 N -0.187 5.187 5 C -0.062 4.062 6 C -0.126 4.126 7 C -0.099 4.099 8 C -0.173 4.173 9 C 0.301 3.699 10 O -0.436 6.436 11 N -0.331 5.331 12 C -0.010 4.010 13 C -0.167 4.167 14 C 0.063 3.937 15 H 0.034 0.966 16 C -0.137 4.137 17 H 0.094 0.906 18 C -0.181 4.181 19 C 0.051 3.949 20 N -0.319 5.319 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.004 3.996 30 C -0.101 4.101 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.774 8.879 -13.372 21.151 hybrid contribution -0.238 -0.275 1.059 1.119 sum -14.012 8.604 -12.314 20.542 Atomic orbital electron populations 1.20729 0.90226 1.03220 1.02582 1.20948 0.97584 0.94174 1.01179 1.22652 0.90021 0.97421 0.96708 1.67688 1.08333 1.31296 1.11419 1.22717 1.00409 0.87112 0.95938 1.20969 0.94533 0.96824 1.00305 1.20277 1.00281 0.93270 0.96027 1.21651 1.01121 0.96237 0.98307 1.20496 0.80086 0.85982 0.83378 1.90657 1.56886 1.65028 1.30998 1.48095 1.53533 1.25532 1.05905 1.21801 1.00718 0.95103 0.83390 1.21589 0.97698 0.97116 1.00345 1.20238 0.89740 0.93747 0.90011 0.96602 1.22647 0.98002 0.96306 0.96707 0.90605 1.23134 0.97559 0.97727 0.99707 1.21247 0.91382 0.90680 0.91546 1.44315 1.09949 1.40947 1.36707 1.18939 0.98047 1.11291 1.07069 0.90370 1.24774 0.96407 0.99399 0.99704 1.69948 1.04748 1.39021 1.42937 0.86200 0.77142 0.80563 0.82321 1.21699 1.21769 1.20705 1.21415 0.94656 0.83091 1.00427 1.21439 0.93470 0.98283 0.96885 0.90923 0.91226 0.91145 0.83048 0.82743 0.89712 0.89960 0.88985 0.88787 0.89117 0.91000 0.90612 0.92823 0.92024 0.92363 0.93523 0.93936 0.93760 0.90339 0.90419 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.04 36.01 0.36 -0.24 16 2 C -0.14 -1.13 5.90 -104.48 -0.62 -1.74 16 3 C 0.09 0.83 10.86 -17.54 -0.19 0.64 16 4 N -0.48 -5.44 10.36 -13.25 -0.14 -5.58 16 5 C 0.10 0.99 10.86 -17.55 -0.19 0.80 16 6 C -0.12 -1.20 5.15 -104.48 -0.54 -1.74 16 7 C -0.06 -0.61 4.66 -27.89 -0.13 -0.74 16 8 C -0.13 -1.46 4.04 -27.88 -0.11 -1.57 16 9 C 0.51 7.71 7.71 -10.98 -0.08 7.62 16 10 O -0.56 -9.98 15.41 5.56 0.09 -9.90 16 11 N -0.60 -9.57 2.94 -173.31 -0.51 -10.08 16 12 C 0.11 1.72 6.27 -3.67 -0.02 1.70 16 13 C -0.13 -2.07 5.19 -27.64 -0.14 -2.21 16 14 C 0.17 3.24 2.85 -68.36 -0.19 3.05 16 15 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 16 C -0.12 -1.99 3.84 -88.65 -0.34 -2.33 16 17 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -2.57 6.28 -24.33 -0.15 -2.72 16 19 C 0.18 4.04 4.64 -2.74 -0.01 4.03 16 20 N -0.59 -13.75 3.12 -164.49 -0.51 -14.26 16 21 C -0.23 -5.71 9.02 -15.06 -0.14 -5.85 16 22 H 0.08 1.89 6.69 -52.49 -0.35 1.54 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -25.92 10.38 55.49 0.58 -25.34 16 25 Si 0.91 21.19 29.55 -169.99 -5.02 16.16 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 C 0.13 2.21 5.44 -4.18 -0.02 2.18 16 30 C -0.07 -0.66 9.55 -39.28 -0.37 -1.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 37 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 38 H 0.09 0.89 7.78 -51.93 -0.40 0.49 16 39 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 40 H 0.09 1.67 7.48 -51.93 -0.39 1.28 16 41 H 0.07 0.88 5.99 -51.93 -0.31 0.57 16 42 H 0.08 1.26 7.01 -51.92 -0.36 0.90 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.02 7.97 -51.93 -0.41 0.60 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 1.19 6.99 -51.93 -0.36 0.83 16 47 H 0.04 1.10 7.55 -51.93 -0.39 0.71 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 50 H 0.08 1.54 6.79 -51.93 -0.35 1.19 16 51 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -30.87 395.50 -10.87 -41.74 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.31 Total: 1.72 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.00 Total: -0.42 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.59 Total: -55.27 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.87 -10.87 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.523 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds