Wall clock time and date at job start Wed Apr 1 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38228 * 120.41478 * 2 1 4 4 N 1.31857 * 120.76148 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72599 * 359.97438 * 4 3 2 6 6 C 1.38186 * 120.76285 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.41496 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47466 * 89.99848 * 7 6 5 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.47136 * 121.01358 * 0.02562 * 11 9 8 13 13 C 1.53045 * 107.68441 * 122.55622 * 12 11 9 14 14 C 1.51144 * 111.11348 * 54.40034 * 13 12 11 15 15 H 1.08999 * 108.45672 * 185.38949 * 14 13 12 16 16 C 1.53992 * 113.17326 * 304.88279 * 14 13 12 17 17 H 1.09003 * 112.71497 * 284.03612 * 16 14 13 18 18 C 1.56006 * 100.38968 * 163.66314 * 16 14 13 19 19 C 1.54504 * 102.62499 * 323.14358 * 18 16 14 20 20 N 1.46472 * 113.23184 * 65.10415 * 14 13 12 21 21 C 1.36936 * 126.05349 * 29.47773 * 20 14 13 22 22 H 1.07998 * 120.00205 * 0.02562 * 21 20 14 23 23 C 1.38815 * 119.99278 * 179.97438 * 21 20 14 24 24 N 1.31612 * 120.00282 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99390 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47027 * 90.00220 * 25 23 21 27 27 H 1.48507 * 109.46809 * 209.99965 * 25 23 21 28 28 H 1.48496 * 109.47381 * 329.99901 * 25 23 21 29 29 C 1.46525 * 121.00746 * 179.72165 * 11 9 8 30 30 C 1.38627 * 120.41947 * 180.29574 * 2 1 3 31 31 H 1.09000 * 109.47193 * 90.00835 * 1 2 3 32 32 H 1.09007 * 109.46810 * 209.99835 * 1 2 3 33 33 H 1.08999 * 109.47241 * 330.00178 * 1 2 3 34 34 H 1.07994 * 119.61994 * 359.97438 * 3 2 1 35 35 H 1.07994 * 119.61666 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47120 * 329.99601 * 7 6 5 37 37 H 1.08998 * 109.46862 * 210.00403 * 7 6 5 38 38 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 39 39 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 40 40 H 1.08997 * 109.81748 * 242.09938 * 12 11 9 41 41 H 1.08999 * 109.82320 * 3.01101 * 12 11 9 42 42 H 1.09009 * 109.15197 * 174.81851 * 13 12 11 43 43 H 1.09001 * 109.15392 * 294.03174 * 13 12 11 44 44 H 1.09003 * 110.78359 * 204.86083 * 18 16 14 45 45 H 1.09003 * 110.94221 * 81.50253 * 18 16 14 46 46 H 1.09002 * 109.89973 * 263.45353 * 19 18 16 47 47 H 1.08996 * 110.05326 * 142.29345 * 19 18 16 48 48 H 0.96998 * 119.99664 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.35592 * 355.83383 * 29 11 9 50 50 H 1.09004 * 109.34428 * 115.38661 * 29 11 9 51 51 H 1.08001 * 120.79226 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 -0.0005 6 6 3.5948 -1.1470 -0.0005 7 6 4.4028 -2.4191 -0.0012 8 6 4.6769 -2.8500 1.4411 9 6 5.4843 -4.1224 1.4404 10 8 5.8089 -4.6340 0.3898 11 7 5.8464 -4.6913 2.6074 12 6 5.4651 -4.0894 3.8947 13 6 4.6754 -5.1375 4.6822 14 6 5.4570 -6.4248 4.8108 15 1 4.8210 -7.1681 5.2915 16 6 5.9068 -6.9987 3.4545 17 1 5.0935 -7.4782 2.9097 18 6 7.0002 -8.0073 3.9245 19 6 7.6605 -7.2631 5.1066 20 7 6.6796 -6.2816 5.6047 21 6 6.8766 -5.3931 6.6279 22 1 6.0866 -4.7144 6.9134 23 6 8.0916 -5.3657 7.2987 24 7 9.0538 -6.1938 6.9517 25 14 8.3602 -4.1541 8.6950 26 1 7.9486 -4.7784 9.9781 27 1 9.7976 -3.7868 8.7619 28 1 7.5482 -2.9343 8.4551 29 6 6.6262 -5.9316 2.6325 30 6 2.2090 -1.1954 -0.0062 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6674 2.1276 -0.0004 35 1 5.3047 0.1287 -0.0014 36 1 5.3486 -2.2485 -0.5154 37 1 3.8461 -3.2027 -0.5150 38 1 3.7310 -3.0205 1.9553 39 1 5.2336 -2.0662 1.9548 40 1 6.3595 -3.8068 4.4498 41 1 4.8433 -3.2110 3.7223 42 1 4.4597 -4.7492 5.6777 43 1 3.7368 -5.3400 4.1664 44 1 7.7241 -8.1909 3.1304 45 1 6.5501 -8.9420 4.2589 46 1 8.5594 -6.7492 4.7659 47 1 7.9139 -7.9687 5.8977 48 1 9.9029 -6.1744 7.4203 49 1 6.7617 -6.2938 1.6135 50 1 7.6022 -5.7355 3.0766 51 1 1.6889 -2.1419 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036768894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:42 Heat of formation + Delta-G solvation = -1.836305 kcal Electronic energy + Delta-G solvation = -30364.638735 eV Core-core repulsion = 26456.168379 eV Total energy + Delta-G solvation = -3908.470357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.58184 -41.13880 -39.73722 -36.47855 -35.62386 -34.59293 -34.45907 -33.16104 -31.63439 -30.80358 -29.16875 -28.12959 -27.08342 -26.29954 -24.90516 -23.98357 -23.82401 -21.89650 -21.74107 -20.74600 -19.57152 -18.43664 -18.03435 -17.79089 -17.64037 -17.03736 -16.83767 -16.43860 -16.20126 -15.67324 -15.36594 -15.19571 -14.94985 -14.81378 -14.38728 -14.14946 -13.98396 -13.93109 -13.87711 -13.81455 -13.58673 -13.23192 -13.17266 -13.13227 -12.92971 -12.82272 -12.60534 -12.52895 -12.39459 -12.20874 -11.98349 -11.95951 -11.64323 -11.50941 -11.45925 -11.17392 -10.80498 -10.63025 -10.47700 -10.34671 -9.69824 -9.55796 -8.79062 -7.78145 -5.10928 0.16051 0.35706 1.48696 1.49026 1.57056 1.65975 2.07491 2.53439 2.84114 3.40396 3.42016 3.58770 3.65392 3.83198 3.85782 3.90018 3.99044 4.06900 4.08406 4.09359 4.16386 4.21212 4.26092 4.28920 4.43846 4.51644 4.58807 4.62017 4.64564 4.72140 4.77511 4.85285 4.85842 4.89256 4.93199 4.98614 4.99479 5.14640 5.16487 5.25535 5.26703 5.29033 5.35594 5.40292 5.40815 5.55799 5.61662 5.69454 5.81718 5.83621 6.25547 6.54695 7.05438 7.15881 7.19736 7.85947 8.53033 9.33585 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013301 B = 0.002631 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.532614 B =10641.578254 C =11690.275086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C 0.077 3.923 4 N -0.509 5.509 5 C 0.078 3.922 6 C -0.126 4.126 7 C -0.051 4.051 8 C -0.124 4.124 9 C 0.512 3.488 10 O -0.587 6.587 11 N -0.603 5.603 12 C 0.118 3.882 13 C -0.124 4.124 14 C 0.161 3.839 15 H 0.015 0.985 16 C -0.101 4.101 17 H 0.105 0.895 18 C -0.131 4.131 19 C 0.185 3.815 20 N -0.608 5.608 21 C -0.215 4.215 22 H 0.092 0.908 23 C -0.071 4.071 24 N -0.955 5.955 25 Si 0.966 3.034 26 H -0.292 1.292 27 H -0.304 1.304 28 H -0.263 1.263 29 C 0.133 3.867 30 C -0.080 4.080 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.010 0.990 47 H 0.003 0.997 48 H 0.241 0.759 49 H 0.078 0.922 50 H 0.043 0.957 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.275 9.379 -13.878 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.136 4.136 3 C -0.080 4.080 4 N -0.217 5.217 5 C -0.078 4.078 6 C -0.128 4.128 7 C -0.089 4.089 8 C -0.164 4.164 9 C 0.303 3.697 10 O -0.468 6.468 11 N -0.334 5.334 12 C -0.004 4.004 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.032 0.968 16 C -0.121 4.121 17 H 0.123 0.877 18 C -0.169 4.169 19 C 0.060 3.940 20 N -0.333 5.333 21 C -0.344 4.344 22 H 0.109 0.891 23 C -0.263 4.263 24 N -0.605 5.605 25 Si 0.796 3.204 26 H -0.220 1.220 27 H -0.232 1.232 28 H -0.187 1.187 29 C 0.010 3.990 30 C -0.105 4.105 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.028 0.972 47 H 0.021 0.979 48 H 0.051 0.949 49 H 0.097 0.903 50 H 0.061 0.939 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.504 10.006 -14.264 24.698 hybrid contribution 0.844 -0.620 1.269 1.646 sum -16.660 9.386 -12.995 23.120 Atomic orbital electron populations 1.20791 0.88083 1.04221 1.03468 1.21253 0.99099 0.93533 0.99743 1.23075 0.89633 0.98880 0.96428 1.67676 1.09553 1.31928 1.12528 1.22856 1.00831 0.87447 0.96713 1.20866 0.94995 0.96021 1.00874 1.20146 0.99896 0.93481 0.95411 1.21668 1.01456 0.93982 0.99276 1.21186 0.79580 0.86637 0.82331 1.90648 1.58056 1.66085 1.31987 1.48145 1.53492 1.25112 1.06642 1.21760 0.99713 0.96299 0.82622 1.21550 0.98483 0.95470 1.00779 1.20495 0.88273 0.95625 0.90154 0.96775 1.22606 0.98065 0.95627 0.95835 0.87729 1.23012 0.98053 0.97926 0.97950 1.20959 0.91054 0.89956 0.92075 1.44545 1.11487 1.40395 1.36872 1.19349 0.97806 1.10687 1.06524 0.89051 1.25534 0.96750 1.01517 1.02504 1.70178 1.04861 1.41158 1.44319 0.85240 0.76284 0.79333 0.79521 1.21979 1.23170 1.18723 1.21169 0.93611 0.84250 0.99989 1.21726 0.93143 0.99381 0.96289 0.89974 0.90360 0.90058 0.81208 0.82433 0.90797 0.90068 0.86577 0.87738 0.92694 0.87010 0.90980 0.89542 0.90604 0.90858 0.97224 0.97878 0.94940 0.90326 0.93853 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.04 71.24 0.71 -0.09 16 2 C -0.13 -1.83 5.90 -19.77 -0.12 -1.95 16 3 C 0.08 1.27 10.86 84.69 0.92 2.19 16 4 N -0.51 -10.96 10.36 -195.84 -2.03 -12.99 16 5 C 0.08 1.53 10.86 84.67 0.92 2.45 16 6 C -0.13 -2.16 5.15 -19.77 -0.10 -2.26 16 7 C -0.05 -0.93 4.66 29.85 0.14 -0.79 16 8 C -0.12 -2.33 4.04 29.85 0.12 -2.21 16 9 C 0.51 14.27 7.71 87.66 0.68 14.95 16 10 O -0.59 -20.20 15.41 -3.03 -0.05 -20.25 16 11 N -0.60 -18.12 2.94 -820.61 -2.41 -20.53 16 12 C 0.12 3.34 6.27 86.27 0.54 3.89 16 13 C -0.12 -3.62 5.19 30.00 0.16 -3.46 16 14 C 0.16 5.86 2.85 44.73 0.13 5.99 16 15 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 16 C -0.10 -3.28 3.84 -9.52 -0.04 -3.32 16 17 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 18 C -0.13 -4.66 6.28 32.15 0.20 -4.46 16 19 C 0.18 8.84 4.64 86.71 0.40 9.25 16 20 N -0.61 -28.48 3.12 -674.32 -2.11 -30.58 16 21 C -0.21 -10.96 9.02 84.03 0.76 -10.20 16 22 H 0.09 4.33 6.69 -2.91 -0.02 4.31 16 23 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 24 N -0.95 -56.62 10.38 21.65 0.22 -56.40 16 25 Si 0.97 44.42 29.55 68.60 2.03 46.45 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 29 C 0.13 4.55 5.44 86.28 0.47 5.02 16 30 C -0.08 -1.16 9.55 22.47 0.21 -0.94 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 0.47 8.10 -2.38 -0.02 0.45 16 33 H 0.08 0.44 8.09 -2.39 -0.02 0.42 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 37 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 38 H 0.12 1.69 7.78 -2.39 -0.02 1.67 16 39 H 0.10 1.81 7.90 -2.39 -0.02 1.79 16 40 H 0.05 1.98 7.48 -2.39 -0.02 1.96 16 41 H 0.11 2.27 5.99 -2.39 -0.01 2.25 16 42 H 0.07 2.18 7.01 -2.38 -0.02 2.17 16 43 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 44 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 45 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.01 0.52 6.99 -2.39 -0.02 0.50 16 47 H 0.00 0.16 7.55 -2.39 -0.02 0.15 16 48 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 50 H 0.04 1.78 6.79 -2.38 -0.02 1.76 16 51 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -70.30 395.50 3.14 -67.16 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.91 Total: 16.50 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 6.57 Total: 10.65 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -6.32 Total: -120.50 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.30 3.14 -67.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.323 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds