Wall clock time and date at job start Wed Apr 1 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38352 * 119.45850 * 2 1 4 4 C 1.38362 * 119.30083 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.85346 * 179.97438 * 4 3 2 6 6 C 1.40019 * 118.28806 * 359.97438 * 4 3 2 7 7 C 1.47837 * 120.56090 * 180.02562 * 6 4 3 8 8 O 1.21555 * 119.99935 * 89.99715 * 7 6 4 9 9 N 1.34775 * 120.00263 * 270.00335 * 7 6 4 10 10 C 1.46993 * 121.41048 * 358.63883 * 9 7 6 11 11 C 1.53047 * 107.04743 * 122.24961 * 10 9 7 12 12 C 1.51145 * 111.10937 * 55.44342 * 11 10 9 13 13 H 1.08997 * 108.46491 * 184.61250 * 12 11 10 14 14 C 1.53993 * 113.17149 * 304.86662 * 12 11 10 15 15 H 1.09001 * 112.72147 * 284.12316 * 14 12 11 16 16 C 1.56018 * 100.38993 * 162.97181 * 14 12 11 17 17 C 1.54502 * 102.61575 * 323.13509 * 16 14 12 18 18 N 1.46471 * 112.67542 * 64.66896 * 12 11 10 19 19 C 1.36934 * 126.05872 * 29.81006 * 18 12 11 20 20 H 1.08004 * 119.99840 * 359.97438 * 19 18 12 21 21 C 1.38810 * 120.00207 * 179.97438 * 19 18 12 22 22 N 1.31618 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47241 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47309 * 119.99995 * 23 21 19 26 26 H 1.48499 * 109.47356 * 240.00142 * 23 21 19 27 27 C 1.46523 * 121.01548 * 179.97438 * 9 7 6 28 28 C 1.39525 * 118.88182 * 0.27703 * 6 4 3 29 29 C 1.50701 * 119.71597 * 179.72426 * 28 6 4 30 30 N 1.31690 * 120.56571 * 359.45645 * 28 6 4 31 31 H 1.09005 * 109.47624 * 90.00013 * 1 2 3 32 32 H 1.09000 * 109.47361 * 209.99951 * 1 2 3 33 33 H 1.09008 * 109.47338 * 330.00023 * 1 2 3 34 34 H 1.08002 * 120.35079 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.46898 * 270.01442 * 5 4 3 36 36 H 1.08997 * 109.47267 * 30.01655 * 5 4 3 37 37 H 1.09001 * 109.47027 * 150.02010 * 5 4 3 38 38 H 1.08998 * 109.26763 * 3.37842 * 10 9 7 39 39 H 1.08997 * 111.03984 * 242.10565 * 10 9 7 40 40 H 1.09000 * 109.15154 * 295.02938 * 11 10 9 41 41 H 1.09000 * 109.11136 * 175.83530 * 11 10 9 42 42 H 1.09005 * 110.77604 * 81.41284 * 16 14 12 43 43 H 1.09000 * 110.77752 * 204.85155 * 16 14 12 44 44 H 1.09001 * 109.90202 * 263.44913 * 17 16 14 45 45 H 1.09001 * 109.90058 * 142.21503 * 17 16 14 46 46 H 0.96994 * 120.00015 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.34820 * 115.34565 * 27 9 7 48 48 H 1.09000 * 109.34238 * 355.64961 * 27 9 7 49 49 H 1.08997 * 109.47122 * 90.00287 * 29 28 6 50 50 H 1.08998 * 109.46983 * 210.00211 * 29 28 6 51 51 H 1.09002 * 109.47192 * 330.00574 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3474 2.4924 -0.0011 6 6 4.2312 -0.0340 -0.0005 7 6 5.7082 -0.0967 -0.0005 8 8 6.3154 -0.1224 1.0522 9 7 6.3815 -0.1252 -1.1677 10 6 5.6779 -0.1251 -2.4582 11 6 6.1754 1.0927 -3.2405 12 6 7.6810 1.0770 -3.3722 13 1 7.9944 1.9993 -3.8613 14 6 8.4068 0.9759 -2.0178 15 1 8.4046 1.9169 -1.4677 16 6 9.8261 0.5337 -2.4914 17 6 9.5087 -0.4114 -3.6717 18 7 8.1666 -0.0539 -4.1663 19 6 7.4931 -0.6704 -5.1868 20 1 6.5088 -0.3271 -5.4692 21 6 8.0754 -1.7366 -5.8584 22 7 9.2752 -2.1547 -5.5146 23 14 7.1563 -2.5780 -7.2500 24 1 5.8371 -1.9229 -7.4393 25 1 7.9468 -2.4690 -8.5025 26 1 6.9546 -4.0106 -6.9151 27 6 7.8452 -0.1867 -1.1936 28 6 3.4715 -1.2043 -0.0059 29 6 4.1626 -2.5435 -0.0122 30 7 2.1558 -1.1487 -0.0001 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6443 2.1382 -0.0004 35 1 4.5339 2.8037 -1.0289 36 1 3.7722 3.2624 0.5130 37 1 5.2977 2.3453 0.5121 38 1 4.6055 -0.0389 -2.2832 39 1 5.8886 -1.0357 -3.0189 40 1 5.8715 2.0007 -2.7197 41 1 5.7294 1.0846 -4.2350 42 1 10.4061 1.3927 -2.8290 43 1 10.3494 -0.0002 -1.6983 44 1 9.5147 -1.4465 -3.3302 45 1 10.2447 -0.2753 -4.4642 46 1 9.6819 -2.8999 -5.9836 47 1 8.1592 -1.1303 -1.6400 48 1 8.2273 -0.1245 -0.1746 49 1 4.3294 -2.8711 1.0139 50 1 3.5383 -3.2720 -0.5294 51 1 5.1201 -2.4558 -0.5257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036776331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:10 Heat of formation + Delta-G solvation = 20.420088 kcal Electronic energy + Delta-G solvation = -32080.324345 eV Core-core repulsion = 28172.819098 eV Total energy + Delta-G solvation = -3907.505247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.05456 -39.66717 -38.12108 -35.03007 -34.33494 -33.83497 -32.76693 -31.66479 -29.60347 -29.10756 -28.12283 -27.75141 -27.15851 -25.21265 -24.02835 -22.55841 -22.26905 -21.21713 -20.12523 -19.80412 -18.39820 -17.29489 -17.06390 -16.36591 -16.13529 -15.26034 -15.12039 -14.87212 -14.67419 -14.42049 -14.16234 -13.95355 -13.60212 -13.42350 -13.34426 -13.14834 -13.01047 -12.92432 -12.67295 -12.45030 -12.38768 -12.18636 -12.13143 -11.86723 -11.77563 -11.58065 -11.45642 -11.14553 -11.07446 -10.82767 -10.68710 -10.20452 -10.11486 -9.97702 -9.92772 -9.70313 -9.65929 -9.54938 -9.37692 -8.81818 -8.64863 -8.25845 -6.86398 -5.76363 -3.09211 0.81575 1.09268 2.68371 3.20137 3.35484 3.41162 3.43864 3.53830 4.03154 4.41574 4.43496 4.44425 4.59509 4.91325 5.12113 5.14160 5.20087 5.24595 5.25456 5.31763 5.36447 5.41546 5.42747 5.49083 5.52298 5.54127 5.57968 5.59631 5.68068 5.74425 5.84991 5.85827 5.99083 6.00676 6.04087 6.07528 6.12272 6.24866 6.25501 6.30990 6.39082 6.49816 6.54507 6.66056 6.73313 6.84976 6.89603 7.52329 7.57537 7.66889 7.77676 7.86366 8.20032 8.29715 9.16176 9.78345 10.45690 11.35674 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.003985 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.370774 B = 7025.138249 C = 8083.298056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.123 4.123 6 C -0.174 4.174 7 C 0.570 3.430 8 O -0.544 6.544 9 N -0.589 5.589 10 C 0.117 3.883 11 C -0.127 4.127 12 C 0.171 3.829 13 H 0.018 0.982 14 C -0.115 4.115 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.176 3.824 18 N -0.594 5.594 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.124 3.876 28 C 0.173 3.827 29 C -0.111 4.111 30 N -0.488 5.488 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.251 0.749 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 7.419 10.592 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.204 4.204 4 C -0.010 4.010 5 C -0.179 4.179 6 C -0.179 4.179 7 C 0.357 3.643 8 O -0.423 6.423 9 N -0.320 5.320 10 C -0.006 4.006 11 C -0.166 4.166 12 C 0.063 3.937 13 H 0.036 0.964 14 C -0.135 4.135 15 H 0.095 0.905 16 C -0.181 4.181 17 C 0.052 3.948 18 N -0.320 5.320 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.002 3.998 28 C 0.035 3.965 29 C -0.168 4.168 30 N -0.199 5.199 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.102 0.898 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.160 6.453 10.971 17.603 hybrid contribution 0.053 0.347 -0.959 1.021 sum -12.107 6.800 10.012 17.119 Atomic orbital electron populations 1.20735 0.88642 1.03474 1.03259 1.21367 0.97030 0.88110 0.92957 1.21714 0.93625 0.99418 1.05636 1.20286 0.93727 0.94448 0.92512 1.20921 1.00262 0.93282 1.03466 1.20626 0.94731 0.94548 1.08026 1.17961 0.86201 0.76402 0.83772 1.90766 1.69268 1.51267 1.30993 1.48052 1.07665 1.70630 1.05639 1.21738 0.94796 1.01069 0.82960 1.21614 0.98172 0.96559 1.00288 1.20253 0.91222 0.92193 0.89992 0.96413 1.22726 0.96945 0.97271 0.96573 0.90479 1.23135 0.94957 1.00259 0.99711 1.21244 0.86797 0.95204 0.91561 1.44338 1.15702 1.34985 1.36987 1.18980 0.99056 1.10064 1.07215 0.90359 1.24754 0.96792 0.98934 0.99676 1.69957 1.14733 1.28888 1.42985 0.86149 0.78766 0.79395 0.82076 1.20558 1.21824 1.21803 1.21623 0.77963 0.99608 1.00625 1.21284 0.88827 0.94664 0.91770 1.20819 1.00158 0.92204 1.03605 1.67357 1.08834 1.29119 1.14605 0.90156 0.90369 0.90660 0.84435 0.89792 0.90577 0.90633 0.91658 0.88787 0.92932 0.90679 0.92319 0.91956 0.93478 0.93966 0.93820 0.90092 0.90147 0.89839 0.89759 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.16 36.00 0.37 -0.46 16 2 C 0.14 1.67 6.78 -82.51 -0.56 1.11 16 3 C -0.18 -2.00 9.43 -39.49 -0.37 -2.38 16 4 C 0.00 -0.02 5.92 -103.91 -0.62 -0.64 16 5 C -0.12 -1.32 9.69 36.00 0.35 -0.97 16 6 C -0.17 -2.60 3.67 -104.82 -0.38 -2.98 16 7 C 0.57 9.50 4.25 -12.33 -0.05 9.45 16 8 O -0.54 -10.56 16.53 5.32 0.09 -10.48 16 9 N -0.59 -9.71 2.90 -174.25 -0.51 -10.21 16 10 C 0.12 1.92 6.28 -3.75 -0.02 1.89 16 11 C -0.13 -2.10 5.15 -27.64 -0.14 -2.24 16 12 C 0.17 3.22 2.89 -68.36 -0.20 3.03 16 13 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 14 C -0.11 -1.93 3.86 -88.39 -0.34 -2.27 16 15 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -2.51 6.29 -24.33 -0.15 -2.66 16 17 C 0.18 3.99 4.63 -2.74 -0.01 3.98 16 18 N -0.59 -13.65 3.08 -164.49 -0.51 -14.16 16 19 C -0.23 -5.69 8.92 -15.06 -0.13 -5.82 16 20 H 0.08 1.91 6.66 -52.48 -0.35 1.56 16 21 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 22 N -0.92 -25.69 10.38 55.49 0.58 -25.11 16 23 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.12 2.14 5.44 -3.94 -0.02 2.11 16 28 C 0.17 2.54 6.80 -82.17 -0.56 1.98 16 29 C -0.11 -1.49 9.79 36.01 0.35 -1.14 16 30 N -0.49 -6.85 10.17 -5.42 -0.06 -6.91 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.44 8.07 -51.92 -0.42 0.02 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.08 0.85 7.77 -51.93 -0.40 0.44 16 36 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.07 0.95 7.19 -51.93 -0.37 0.57 16 38 H 0.07 0.99 6.33 -51.93 -0.33 0.66 16 39 H 0.09 1.80 7.38 -51.93 -0.38 1.42 16 40 H 0.05 0.75 7.77 -51.93 -0.40 0.35 16 41 H 0.07 1.29 6.97 -51.93 -0.36 0.93 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 44 H 0.05 1.18 6.99 -51.93 -0.36 0.82 16 45 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.08 1.57 6.80 -51.93 -0.35 1.22 16 48 H 0.08 1.38 6.99 -51.93 -0.36 1.02 16 49 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.08 1.14 7.07 -51.93 -0.37 0.77 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -30.37 392.36 -10.32 -40.70 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.21 Total: 2.31 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.60 Total: 1.77 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.49 Total: -56.39 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.37 -10.32 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036776331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.117 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds