Wall clock time and date at job start Wed Apr 1 2020 03:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38352 * 119.45850 * 2 1 4 4 C 1.38362 * 119.30083 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.85346 * 179.97438 * 4 3 2 6 6 C 1.40019 * 118.28806 * 359.97438 * 4 3 2 7 7 C 1.47837 * 120.56090 * 180.02562 * 6 4 3 8 8 O 1.21555 * 119.99935 * 89.99715 * 7 6 4 9 9 N 1.34775 * 120.00263 * 270.00335 * 7 6 4 10 10 C 1.46993 * 121.41048 * 358.63883 * 9 7 6 11 11 C 1.53047 * 107.04743 * 122.24961 * 10 9 7 12 12 C 1.51145 * 111.10937 * 55.44342 * 11 10 9 13 13 H 1.08997 * 108.46491 * 184.61250 * 12 11 10 14 14 C 1.53993 * 113.17149 * 304.86662 * 12 11 10 15 15 H 1.09001 * 112.72147 * 284.12316 * 14 12 11 16 16 C 1.56018 * 100.38993 * 162.97181 * 14 12 11 17 17 C 1.54502 * 102.61575 * 323.13509 * 16 14 12 18 18 N 1.46471 * 112.67542 * 64.66896 * 12 11 10 19 19 C 1.36934 * 126.05872 * 29.81006 * 18 12 11 20 20 H 1.08004 * 119.99840 * 359.97438 * 19 18 12 21 21 C 1.38810 * 120.00207 * 179.97438 * 19 18 12 22 22 N 1.31618 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47241 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47309 * 119.99995 * 23 21 19 26 26 H 1.48499 * 109.47356 * 240.00142 * 23 21 19 27 27 C 1.46523 * 121.01548 * 179.97438 * 9 7 6 28 28 C 1.39525 * 118.88182 * 0.27703 * 6 4 3 29 29 C 1.50701 * 119.71597 * 179.72426 * 28 6 4 30 30 N 1.31690 * 120.56571 * 359.45645 * 28 6 4 31 31 H 1.09005 * 109.47624 * 90.00013 * 1 2 3 32 32 H 1.09000 * 109.47361 * 209.99951 * 1 2 3 33 33 H 1.09008 * 109.47338 * 330.00023 * 1 2 3 34 34 H 1.08002 * 120.35079 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.46898 * 270.01442 * 5 4 3 36 36 H 1.08997 * 109.47267 * 30.01655 * 5 4 3 37 37 H 1.09001 * 109.47027 * 150.02010 * 5 4 3 38 38 H 1.08998 * 109.26763 * 3.37842 * 10 9 7 39 39 H 1.08997 * 111.03984 * 242.10565 * 10 9 7 40 40 H 1.09000 * 109.15154 * 295.02938 * 11 10 9 41 41 H 1.09000 * 109.11136 * 175.83530 * 11 10 9 42 42 H 1.09005 * 110.77604 * 81.41284 * 16 14 12 43 43 H 1.09000 * 110.77752 * 204.85155 * 16 14 12 44 44 H 1.09001 * 109.90202 * 263.44913 * 17 16 14 45 45 H 1.09001 * 109.90058 * 142.21503 * 17 16 14 46 46 H 0.96994 * 120.00015 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.34820 * 115.34565 * 27 9 7 48 48 H 1.09000 * 109.34238 * 355.64961 * 27 9 7 49 49 H 1.08997 * 109.47122 * 90.00287 * 29 28 6 50 50 H 1.08998 * 109.46983 * 210.00211 * 29 28 6 51 51 H 1.09002 * 109.47192 * 330.00574 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3474 2.4924 -0.0011 6 6 4.2312 -0.0340 -0.0005 7 6 5.7082 -0.0967 -0.0005 8 8 6.3154 -0.1224 1.0522 9 7 6.3815 -0.1252 -1.1677 10 6 5.6779 -0.1251 -2.4582 11 6 6.1754 1.0927 -3.2405 12 6 7.6810 1.0770 -3.3722 13 1 7.9944 1.9993 -3.8613 14 6 8.4068 0.9759 -2.0178 15 1 8.4046 1.9169 -1.4677 16 6 9.8261 0.5337 -2.4914 17 6 9.5087 -0.4114 -3.6717 18 7 8.1666 -0.0539 -4.1663 19 6 7.4931 -0.6704 -5.1868 20 1 6.5088 -0.3271 -5.4692 21 6 8.0754 -1.7366 -5.8584 22 7 9.2752 -2.1547 -5.5146 23 14 7.1563 -2.5780 -7.2500 24 1 5.8371 -1.9229 -7.4393 25 1 7.9468 -2.4690 -8.5025 26 1 6.9546 -4.0106 -6.9151 27 6 7.8452 -0.1867 -1.1936 28 6 3.4715 -1.2043 -0.0059 29 6 4.1626 -2.5435 -0.0122 30 7 2.1558 -1.1487 -0.0001 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6443 2.1382 -0.0004 35 1 4.5339 2.8037 -1.0289 36 1 3.7722 3.2624 0.5130 37 1 5.2977 2.3453 0.5121 38 1 4.6055 -0.0389 -2.2832 39 1 5.8886 -1.0357 -3.0189 40 1 5.8715 2.0007 -2.7197 41 1 5.7294 1.0846 -4.2350 42 1 10.4061 1.3927 -2.8290 43 1 10.3494 -0.0002 -1.6983 44 1 9.5147 -1.4465 -3.3302 45 1 10.2447 -0.2753 -4.4642 46 1 9.6819 -2.8999 -5.9836 47 1 8.1592 -1.1303 -1.6400 48 1 8.2273 -0.1245 -0.1746 49 1 4.3294 -2.8711 1.0139 50 1 3.5383 -3.2720 -0.5294 51 1 5.1201 -2.4558 -0.5257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036776331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:09 Heat of formation + Delta-G solvation = 3.596981 kcal Electronic energy + Delta-G solvation = -32081.053850 eV Core-core repulsion = 28172.819098 eV Total energy + Delta-G solvation = -3908.234752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18585 -40.95130 -39.54878 -36.54088 -35.28365 -34.89783 -34.41731 -33.21761 -31.15383 -30.15667 -29.45386 -28.77848 -28.26588 -26.82202 -25.61793 -24.02357 -23.31633 -22.17634 -21.81496 -21.09255 -19.85023 -18.64718 -18.26716 -17.96061 -17.45719 -16.87661 -16.37636 -16.01420 -15.82692 -15.80972 -15.65791 -15.43072 -14.79265 -14.46257 -14.36849 -14.27082 -14.15240 -13.93851 -13.92636 -13.85619 -13.68200 -13.22298 -13.18533 -13.12303 -13.01623 -12.87930 -12.76002 -12.66524 -12.60566 -12.56371 -12.24786 -11.95112 -11.68828 -11.53597 -11.49719 -11.22468 -11.20838 -10.64847 -10.53288 -10.42310 -9.78848 -9.68500 -8.79272 -7.78773 -5.11222 -0.15583 0.15584 1.38828 1.46542 1.47906 1.56210 1.91475 2.52313 2.57334 3.11248 3.34050 3.41103 3.53878 3.59967 3.62520 3.79830 3.90540 4.04029 4.06889 4.16627 4.23054 4.30091 4.33815 4.43423 4.46784 4.51171 4.53328 4.56038 4.58088 4.66114 4.67790 4.76645 4.79816 4.82950 4.85120 4.93619 4.95341 5.02642 5.09212 5.12462 5.19534 5.21788 5.23536 5.26179 5.38633 5.47987 5.58517 5.66777 5.71069 5.82611 6.25354 6.34146 6.90240 6.98433 7.16104 7.85556 8.52062 9.32792 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.003985 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.370774 B = 7025.138249 C = 8083.298056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.136 3.864 3 C -0.175 4.175 4 C -0.007 4.007 5 C -0.120 4.120 6 C -0.199 4.199 7 C 0.579 3.421 8 O -0.576 6.576 9 N -0.587 5.587 10 C 0.129 3.871 11 C -0.121 4.121 12 C 0.164 3.836 13 H 0.021 0.979 14 C -0.099 4.099 15 H 0.109 0.891 16 C -0.129 4.129 17 C 0.185 3.815 18 N -0.609 5.609 19 C -0.215 4.215 20 H 0.088 0.912 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.299 1.299 26 H -0.300 1.300 27 C 0.130 3.870 28 C 0.157 3.843 29 C -0.108 4.108 30 N -0.509 5.509 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.177 0.823 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.011 0.989 45 H 0.004 0.996 46 H 0.242 0.758 47 H 0.050 0.950 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 10.403 11.464 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.001 4.001 3 C -0.194 4.194 4 C -0.014 4.014 5 C -0.176 4.176 6 C -0.204 4.204 7 C 0.367 3.633 8 O -0.456 6.456 9 N -0.317 5.317 10 C 0.006 3.994 11 C -0.160 4.160 12 C 0.057 3.943 13 H 0.039 0.961 14 C -0.120 4.120 15 H 0.127 0.873 16 C -0.167 4.167 17 C 0.060 3.940 18 N -0.334 5.334 19 C -0.344 4.344 20 H 0.106 0.894 21 C -0.258 4.258 22 N -0.602 5.602 23 Si 0.792 3.208 24 H -0.187 1.187 25 H -0.227 1.227 26 H -0.227 1.227 27 C 0.007 3.993 28 C 0.019 3.981 29 C -0.165 4.165 30 N -0.220 5.220 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.195 0.805 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.029 0.971 45 H 0.022 0.978 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.110 0.890 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.180 9.471 11.846 21.459 hybrid contribution 0.892 -0.541 -1.175 1.571 sum -14.288 8.930 10.672 19.945 Atomic orbital electron populations 1.20859 0.85929 1.04744 1.04335 1.22089 0.98846 0.87820 0.91338 1.22121 0.92891 1.00703 1.03679 1.20621 0.94785 0.94215 0.91829 1.20967 0.99449 0.93036 1.04190 1.20547 0.93265 0.95906 1.10702 1.18211 0.87050 0.75055 0.82966 1.90738 1.70255 1.52655 1.31990 1.48019 1.07223 1.70578 1.05856 1.21543 0.95701 0.99631 0.82516 1.21557 0.96169 0.97798 1.00427 1.20486 0.93068 0.90406 0.90295 0.96132 1.22697 0.95500 0.98183 0.95570 0.87339 1.23006 0.96075 0.99706 0.97951 1.20964 0.86135 0.94743 0.92141 1.44562 1.15920 1.35839 1.37097 1.19334 0.99110 1.09179 1.06764 0.89412 1.25460 0.97700 1.00355 1.02322 1.70170 1.16309 1.29411 1.44267 0.85235 0.78344 0.77967 0.79240 1.18688 1.22658 1.22742 1.21454 0.78798 0.98537 1.00504 1.21330 0.89447 0.94691 0.92673 1.20767 0.99398 0.92723 1.03620 1.67402 1.08359 1.30697 1.15553 0.88978 0.90741 0.87812 0.80524 0.88749 0.87659 0.92731 0.89999 0.92174 0.89657 0.91190 0.90620 0.90390 0.97119 0.97774 0.94901 0.93126 0.89863 0.89591 0.88995 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.16 71.24 0.72 -0.51 16 2 C 0.14 2.76 6.78 42.57 0.29 3.05 16 3 C -0.17 -3.07 9.43 22.33 0.21 -2.86 16 4 C -0.01 -0.15 5.92 -19.40 -0.11 -0.26 16 5 C -0.12 -2.13 9.69 71.24 0.69 -1.44 16 6 C -0.20 -5.69 3.67 -19.99 -0.07 -5.76 16 7 C 0.58 19.02 4.25 86.78 0.37 19.39 16 8 O -0.58 -22.34 16.53 -3.89 -0.06 -22.41 16 9 N -0.59 -19.09 2.90 -823.49 -2.39 -21.48 16 10 C 0.13 4.13 6.28 86.30 0.54 4.67 16 11 C -0.12 -3.72 5.15 30.00 0.15 -3.56 16 12 C 0.16 5.94 2.89 44.73 0.13 6.07 16 13 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 14 C -0.10 -3.18 3.86 -9.35 -0.04 -3.22 16 15 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 16 C -0.13 -4.47 6.29 32.15 0.20 -4.26 16 17 C 0.19 8.72 4.63 86.71 0.40 9.12 16 18 N -0.61 -28.39 3.08 -674.33 -2.08 -30.47 16 19 C -0.21 -11.02 8.92 84.03 0.75 -10.27 16 20 H 0.09 4.25 6.66 -2.91 -0.02 4.23 16 21 C -0.07 -3.59 5.49 84.86 0.47 -3.12 16 22 N -0.95 -55.98 10.38 21.65 0.22 -55.75 16 23 Si 0.96 44.67 29.55 68.60 2.03 46.70 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 C 0.13 4.47 5.44 86.43 0.47 4.94 16 28 C 0.16 4.51 6.80 42.89 0.29 4.80 16 29 C -0.11 -2.99 9.79 71.24 0.70 -2.29 16 30 N -0.51 -13.53 10.17 -171.06 -1.74 -15.27 16 31 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 0.68 8.07 -2.38 -0.02 0.66 16 34 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.09 1.48 7.77 -2.39 -0.02 1.46 16 36 H 0.10 1.23 8.10 -2.39 -0.02 1.22 16 37 H 0.05 1.22 7.19 -2.39 -0.02 1.20 16 38 H 0.08 2.38 6.33 -2.39 -0.02 2.36 16 39 H 0.06 2.36 7.38 -2.39 -0.02 2.34 16 40 H 0.08 2.11 7.77 -2.39 -0.02 2.09 16 41 H 0.07 2.26 6.97 -2.39 -0.02 2.24 16 42 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.08 2.47 7.97 -2.39 -0.02 2.45 16 44 H 0.01 0.57 6.99 -2.39 -0.02 0.55 16 45 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 46 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.05 2.06 6.80 -2.39 -0.02 2.04 16 48 H 0.08 2.84 6.99 -2.39 -0.02 2.82 16 49 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 50 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.06 1.84 7.07 -2.39 -0.02 1.83 16 Total: -1.00 -69.69 392.36 3.07 -66.62 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.93 Total: 17.57 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.16 Total: 14.49 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -5.98 Total: -122.97 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.69 3.07 -66.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036776331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.214 kcal (2) G-P(sol) polarization free energy of solvation -69.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds