Wall clock time and date at job start Wed Apr 1 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38349 * 119.46056 * 2 1 4 4 C 1.38362 * 119.30210 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.85470 * 179.97438 * 4 3 2 6 6 C 1.40023 * 118.28594 * 0.02562 * 4 3 2 7 7 C 1.47843 * 120.55442 * 179.97438 * 6 4 3 8 8 O 1.21556 * 120.00102 * 89.99668 * 7 6 4 9 9 N 1.34779 * 119.99813 * 269.99591 * 7 6 4 10 10 C 1.46593 * 119.68138 * 0.02562 * 9 7 6 11 11 C 1.53957 * 110.57404 * 227.84475 * 10 9 7 12 12 C 1.51520 * 107.34832 * 308.94886 * 11 10 9 13 13 H 1.09004 * 108.80610 * 306.56171 * 12 11 10 14 14 C 1.55639 * 107.81758 * 65.01008 * 12 11 10 15 15 H 1.08999 * 111.68209 * 51.36922 * 14 12 11 16 16 C 1.53738 * 100.11617 * 169.28578 * 14 12 11 17 17 C 1.55290 * 101.84239 * 320.76029 * 16 14 12 18 18 N 1.45464 * 117.35238 * 181.90993 * 12 11 10 19 19 C 1.36935 * 126.40617 * 30.64962 * 18 12 11 20 20 H 1.08003 * 119.99795 * 9.71371 * 19 18 12 21 21 C 1.38811 * 120.00174 * 189.70393 * 19 18 12 22 22 N 1.31615 * 119.99983 * 208.40624 * 21 19 18 23 23 Si 1.86804 * 119.99568 * 28.40480 * 21 19 18 24 24 H 1.48499 * 109.47284 * 275.25228 * 23 21 19 25 25 H 1.48508 * 109.46588 * 155.25530 * 23 21 19 26 26 H 1.48495 * 109.47276 * 35.26199 * 23 21 19 27 27 C 1.47645 * 119.53135 * 180.34913 * 9 7 6 28 28 C 1.39512 * 118.88347 * 0.24904 * 6 4 3 29 29 C 1.50703 * 119.71676 * 179.75194 * 28 6 4 30 30 N 1.31695 * 120.56997 * 359.50168 * 28 6 4 31 31 H 1.09000 * 109.46977 * 89.99843 * 1 2 3 32 32 H 1.08997 * 109.47122 * 210.00230 * 1 2 3 33 33 H 1.09009 * 109.46660 * 329.99918 * 1 2 3 34 34 H 1.08007 * 120.35100 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.47252 * 270.02487 * 5 4 3 36 36 H 1.09007 * 109.47343 * 30.02252 * 5 4 3 37 37 H 1.08996 * 109.47129 * 150.01913 * 5 4 3 38 38 H 1.09001 * 109.25410 * 107.56577 * 10 9 7 39 39 H 1.08997 * 109.25887 * 348.12659 * 10 9 7 40 40 H 1.08995 * 109.88190 * 189.48773 * 11 10 9 41 41 H 1.09000 * 109.88090 * 68.40790 * 11 10 9 42 42 H 1.08995 * 110.95734 * 202.62264 * 16 14 12 43 43 H 1.09001 * 110.95677 * 78.90034 * 16 14 12 44 44 H 1.08998 * 109.92140 * 263.12982 * 17 16 14 45 45 H 1.09006 * 110.08773 * 141.92319 * 17 16 14 46 46 H 0.96999 * 120.00196 * 4.67621 * 22 21 19 47 47 H 1.09000 * 110.40848 * 8.46784 * 27 9 7 48 48 H 1.08996 * 109.50220 * 247.04548 * 27 9 7 49 49 H 1.08993 * 109.47404 * 90.00212 * 29 28 6 50 50 H 1.09001 * 109.46961 * 210.00062 * 29 28 6 51 51 H 1.08999 * 109.46760 * 329.99537 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.3475 2.4923 -0.0011 6 6 4.2312 -0.0341 -0.0016 7 6 5.7083 -0.0967 -0.0028 8 8 6.3164 -0.1229 1.0494 9 7 6.3806 -0.1248 -1.1706 10 6 5.6403 -0.0924 -2.4354 11 6 6.1553 -1.1834 -3.3919 12 6 7.6621 -1.0431 -3.4678 13 1 7.9063 -0.0146 -3.7337 14 6 8.2416 -1.3619 -2.0589 15 1 7.8678 -2.3111 -1.6751 16 6 9.7392 -1.4463 -2.3958 17 6 9.7167 -2.1713 -3.7689 18 7 8.3739 -1.9502 -4.3547 19 6 7.8946 -2.4935 -5.5166 20 1 6.9634 -2.1400 -5.9342 21 6 8.6057 -3.4985 -6.1580 22 7 8.5109 -3.6418 -7.4628 23 14 9.6971 -4.6474 -5.1688 24 1 11.0282 -4.0191 -4.9729 25 1 9.8577 -5.9296 -5.9008 26 1 9.0727 -4.9072 -3.8468 27 6 7.8554 -0.1951 -1.1598 28 6 3.4716 -1.2043 -0.0074 29 6 4.1627 -2.5435 -0.0143 30 7 2.1558 -1.1487 -0.0019 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8901 0.5139 34 1 1.6444 2.1382 -0.0004 35 1 4.5339 2.8037 -1.0289 36 1 3.7723 3.2623 0.5131 37 1 5.2978 2.3452 0.5120 38 1 5.7684 0.8844 -2.9020 39 1 4.5816 -0.2591 -2.2367 40 1 5.7198 -1.0446 -4.3813 41 1 5.8937 -2.1685 -3.0056 42 1 10.2735 -2.0371 -1.6518 43 1 10.1749 -0.4514 -2.4873 44 1 9.8896 -3.2382 -3.6284 45 1 10.4812 -1.7546 -4.4248 46 1 7.9987 -3.0045 -7.9848 47 1 8.2203 -0.3666 -0.1471 48 1 8.2669 0.7337 -1.5546 49 1 4.3295 -2.8716 1.0116 50 1 3.5383 -3.2719 -0.5318 51 1 5.1200 -2.4556 -0.5280 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036776332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:14 Heat of formation + Delta-G solvation = 27.141408 kcal Electronic energy + Delta-G solvation = -31558.506195 eV Core-core repulsion = 27651.292406 eV Total energy + Delta-G solvation = -3907.213789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.26417 -39.85765 -38.38134 -35.61831 -34.50155 -34.00834 -32.82857 -31.72164 -30.42672 -29.37433 -28.53710 -28.04208 -27.39782 -25.00012 -23.52069 -22.72057 -22.25686 -21.35592 -20.59780 -20.01200 -19.21529 -17.60860 -17.28377 -16.92665 -16.31357 -15.40101 -15.24869 -15.05370 -15.01364 -14.71613 -14.44111 -13.93461 -13.74294 -13.63495 -13.48024 -13.45728 -13.27339 -13.19452 -12.97084 -12.73264 -12.58839 -12.50212 -12.27911 -12.20651 -11.97941 -11.91739 -11.86202 -11.44570 -11.16602 -10.89612 -10.78011 -10.56954 -10.33321 -10.17559 -9.84724 -9.71626 -9.57340 -9.52701 -9.16406 -8.96246 -8.69590 -8.46398 -7.11316 -6.37979 -3.19700 0.66520 0.94958 2.43096 2.87739 3.38401 3.42472 3.52014 3.69530 3.89670 4.23112 4.29022 4.37242 4.61433 4.68699 4.78242 4.90118 4.98029 5.04794 5.10914 5.12522 5.15380 5.22330 5.24664 5.28485 5.29529 5.30937 5.40327 5.45044 5.48926 5.53891 5.56403 5.62141 5.72845 5.75435 5.84219 5.87641 5.91075 5.94487 5.99166 6.02685 6.08537 6.18522 6.24305 6.39761 6.43034 6.51418 6.65436 6.73970 6.88775 7.27886 7.67433 7.73379 8.01951 8.30718 8.98355 9.58344 10.25119 11.11253 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.003267 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.729009 B = 8567.651315 C = 9228.072032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.146 3.854 3 C -0.184 4.184 4 C -0.003 4.003 5 C -0.123 4.123 6 C -0.181 4.181 7 C 0.571 3.429 8 O -0.537 6.537 9 N -0.598 5.598 10 C 0.113 3.887 11 C -0.126 4.126 12 C 0.168 3.832 13 H 0.027 0.973 14 C -0.130 4.130 15 H 0.084 0.916 16 C -0.119 4.119 17 C 0.119 3.881 18 N -0.599 5.599 19 C -0.328 4.328 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.913 5.913 23 Si 1.053 2.947 24 H -0.294 1.294 25 H -0.300 1.300 26 H -0.294 1.294 27 C 0.127 3.873 28 C 0.176 3.824 29 C -0.112 4.112 30 N -0.487 5.487 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.030 0.970 45 H 0.041 0.959 46 H 0.264 0.736 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 11.830 15.874 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.008 3.992 3 C -0.203 4.203 4 C -0.011 4.011 5 C -0.179 4.179 6 C -0.186 4.186 7 C 0.357 3.643 8 O -0.414 6.414 9 N -0.330 5.330 10 C -0.010 4.010 11 C -0.165 4.165 12 C 0.060 3.940 13 H 0.044 0.956 14 C -0.150 4.150 15 H 0.102 0.898 16 C -0.157 4.157 17 C -0.006 4.006 18 N -0.325 5.325 19 C -0.455 4.455 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.553 5.553 23 Si 0.887 3.113 24 H -0.222 1.222 25 H -0.228 1.228 26 H -0.222 1.222 27 C 0.005 3.995 28 C 0.037 3.963 29 C -0.170 4.170 30 N -0.198 5.198 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.104 0.896 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.686 9.684 16.159 21.658 hybrid contribution -0.587 2.049 0.043 2.132 sum -11.273 11.733 16.202 22.962 Atomic orbital electron populations 1.20753 0.88510 1.03597 1.03362 1.21415 0.97141 0.88068 0.92554 1.21729 0.93587 0.99492 1.05538 1.20286 0.93798 0.94353 0.92682 1.20910 1.00291 0.93379 1.03357 1.20600 0.94535 0.94667 1.08775 1.18085 0.86375 0.75953 0.83872 1.90782 1.69230 1.50352 1.31025 1.48297 1.07317 1.71699 1.05683 1.21780 0.95533 0.99905 0.83777 1.21856 0.97746 0.98105 0.98828 1.20765 0.90887 0.94193 0.88167 0.95602 1.22780 0.96890 0.98222 0.97156 0.89780 1.22398 0.95128 1.00795 0.97393 1.22015 0.88883 0.97392 0.92273 1.44594 1.09481 1.54484 1.23942 1.19952 1.09243 1.19190 0.97123 0.90354 1.25714 1.00365 0.98678 0.96615 1.70895 1.39477 1.40606 1.04316 0.83956 0.75912 0.76955 0.74487 1.22185 1.22783 1.22151 1.21616 0.77919 0.98358 1.01572 1.21294 0.88846 0.94613 0.91499 1.20847 1.00155 0.92232 1.03725 1.67389 1.08774 1.29112 1.14475 0.90048 0.90260 0.90582 0.84324 0.89922 0.90407 0.90676 0.91522 0.90555 0.90320 0.91264 0.91275 0.91173 0.95224 0.94056 0.92620 0.88850 0.91019 0.89723 0.89590 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 36.01 0.37 -0.37 16 2 C 0.15 1.53 6.78 -82.51 -0.56 0.97 16 3 C -0.18 -1.74 9.43 -39.49 -0.37 -2.12 16 4 C 0.00 -0.03 5.95 -103.91 -0.62 -0.65 16 5 C -0.12 -1.09 9.69 36.00 0.35 -0.74 16 6 C -0.18 -2.38 3.64 -104.82 -0.38 -2.76 16 7 C 0.57 8.26 4.20 -12.33 -0.05 8.21 16 8 O -0.54 -9.27 16.46 5.32 0.09 -9.18 16 9 N -0.60 -8.17 3.00 -173.64 -0.52 -8.69 16 10 C 0.11 1.49 6.22 -3.49 -0.02 1.47 16 11 C -0.13 -2.09 5.51 -26.98 -0.15 -2.24 16 12 C 0.17 3.13 2.57 -67.83 -0.17 2.95 16 13 H 0.03 0.49 7.93 -51.93 -0.41 0.08 16 14 C -0.13 -2.09 2.88 -89.20 -0.26 -2.35 16 15 H 0.08 1.47 8.13 -51.93 -0.42 1.04 16 16 C -0.12 -1.90 6.53 -25.13 -0.16 -2.07 16 17 C 0.12 2.52 5.20 -1.91 -0.01 2.51 16 18 N -0.60 -14.02 3.23 -162.92 -0.53 -14.55 16 19 C -0.33 -9.00 9.96 -15.06 -0.15 -9.15 16 20 H 0.08 2.24 7.59 -52.48 -0.40 1.85 16 21 C -0.01 -0.36 5.43 -17.43 -0.09 -0.45 16 22 N -0.91 -28.05 13.70 55.49 0.76 -27.29 16 23 Si 1.05 26.45 24.79 -169.99 -4.21 22.23 16 24 H -0.29 -6.97 6.79 56.52 0.38 -6.58 16 25 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.29 -7.11 6.89 56.52 0.39 -6.72 16 27 C 0.13 1.75 5.93 -3.78 -0.02 1.72 16 28 C 0.18 2.35 6.53 -82.17 -0.54 1.82 16 29 C -0.11 -1.41 9.79 36.01 0.35 -1.06 16 30 N -0.49 -6.30 10.17 -5.42 -0.06 -6.35 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.37 8.07 -51.92 -0.42 -0.05 16 34 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.07 0.79 7.19 -51.93 -0.37 0.41 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.97 6.05 -51.93 -0.31 0.65 16 40 H 0.08 1.38 7.69 -51.93 -0.40 0.98 16 41 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 44 H 0.03 0.68 3.47 -51.93 -0.18 0.50 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.26 7.99 8.73 -40.82 -0.36 7.64 16 47 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 48 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 49 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.08 1.04 7.07 -51.93 -0.37 0.68 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -33.23 393.11 -9.36 -42.59 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -8.32 Total: -0.39 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.50 Total: -4.30 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.34 Total: -56.88 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.21 Total: 22.23 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.23 -9.36 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036776332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.732 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds