Wall clock time and date at job start Wed Apr 1 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38355 * 119.45741 * 2 1 4 4 C 1.38355 * 119.30125 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.85709 * 179.97438 * 4 3 2 6 6 C 1.40026 * 118.28746 * 0.02562 * 4 3 2 7 7 C 1.47837 * 120.55616 * 179.97438 * 6 4 3 8 8 O 1.21558 * 120.00283 * 89.99988 * 7 6 4 9 9 N 1.34781 * 120.00154 * 269.99474 * 7 6 4 10 10 C 1.47216 * 121.35882 * 359.97438 * 9 7 6 11 11 C 1.52755 * 107.75546 * 121.92521 * 10 9 7 12 12 C 1.53152 * 110.84358 * 57.88870 * 11 10 9 13 13 H 1.08995 * 111.79729 * 70.31744 * 12 11 10 14 14 C 1.53938 * 110.88622 * 304.73045 * 12 11 10 15 15 H 1.09005 * 109.50762 * 172.04500 * 14 12 11 16 16 C 1.54196 * 102.21325 * 287.21335 * 14 12 11 17 17 C 1.54719 * 102.06942 * 322.44040 * 16 14 12 18 18 N 1.47218 * 107.23966 * 21.52126 * 17 16 14 19 19 C 1.36939 * 125.88515 * 183.69637 * 18 17 16 20 20 H 1.08006 * 119.99750 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00151 * 0.03587 * 19 18 17 22 22 N 1.31619 * 120.00233 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99931 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47115 * 90.00146 * 23 21 19 25 25 H 1.48497 * 109.47483 * 209.99970 * 23 21 19 26 26 H 1.48505 * 109.47165 * 330.00218 * 23 21 19 27 27 C 1.46705 * 121.36083 * 180.02562 * 9 7 6 28 28 C 1.39519 * 118.88377 * 0.25132 * 6 4 3 29 29 C 1.50693 * 119.71768 * 179.75247 * 28 6 4 30 30 N 1.31698 * 120.56236 * 359.49390 * 28 6 4 31 31 H 1.09009 * 109.47038 * 89.99997 * 1 2 3 32 32 H 1.09002 * 109.47397 * 209.99964 * 1 2 3 33 33 H 1.08997 * 109.47178 * 330.00412 * 1 2 3 34 34 H 1.08005 * 120.35201 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47276 * 270.02661 * 5 4 3 36 36 H 1.09001 * 109.47120 * 30.02038 * 5 4 3 37 37 H 1.08997 * 109.47430 * 150.02152 * 5 4 3 38 38 H 1.09000 * 109.79971 * 241.49022 * 10 9 7 39 39 H 1.09003 * 109.80130 * 2.30255 * 10 9 7 40 40 H 1.08999 * 109.20367 * 178.24031 * 11 10 9 41 41 H 1.09000 * 109.20465 * 297.58074 * 11 10 9 42 42 H 1.09000 * 110.91210 * 80.63464 * 16 14 12 43 43 H 1.08999 * 110.91592 * 204.25009 * 16 14 12 44 44 H 1.08998 * 109.89038 * 262.10694 * 17 16 14 45 45 H 1.09004 * 109.88708 * 140.92036 * 17 16 14 46 46 H 0.97001 * 119.99909 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.14627 * 111.75851 * 27 9 7 48 48 H 1.09005 * 109.14718 * 352.60849 * 27 9 7 49 49 H 1.09006 * 109.47665 * 89.99455 * 29 28 6 50 50 H 1.09000 * 109.47077 * 209.99889 * 29 28 6 51 51 H 1.08998 * 109.47058 * 329.99855 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.3474 2.4925 0.0000 6 6 4.2312 -0.0339 0.0005 7 6 5.7082 -0.0965 0.0005 8 8 6.3155 -0.1222 1.0532 9 7 6.3815 -0.1251 -1.1667 10 6 5.6765 -0.0959 -2.4588 11 6 6.1798 1.1186 -3.2367 12 6 7.6976 1.0512 -3.4301 13 1 7.9818 0.2655 -4.1301 14 6 8.4171 0.9019 -2.0775 15 1 9.4774 0.7148 -2.2479 16 6 8.2546 2.3075 -1.4647 17 6 8.4117 3.2207 -2.7037 18 7 8.1167 2.4008 -3.8903 19 6 8.2114 2.8113 -5.1933 20 1 7.9702 2.1274 -5.9937 21 6 8.6177 4.1060 -5.4853 22 7 8.9123 4.9392 -4.5099 23 14 8.7476 4.6656 -7.2628 24 1 7.4490 5.2405 -7.6970 25 1 9.8096 5.6968 -7.3808 26 1 9.0874 3.5043 -8.1238 27 6 7.8468 -0.1877 -1.2015 28 6 3.4716 -1.2042 -0.0054 29 6 4.1627 -2.5433 -0.0112 30 7 2.1558 -1.1486 -0.0009 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6443 2.1382 -0.0004 35 1 4.5346 2.8034 -1.0278 36 1 3.7718 3.2627 0.5134 37 1 5.2973 2.3456 0.5139 38 1 5.8912 -1.0071 -3.0172 39 1 4.6029 -0.0095 -2.2917 40 1 5.6949 1.1454 -4.2125 41 1 5.9291 2.0257 -2.6868 42 1 7.2676 2.4251 -1.0173 43 1 9.0379 2.5060 -0.7332 44 1 9.4325 3.5988 -2.7586 45 1 7.7089 4.0518 -2.6432 46 1 9.1966 5.8438 -4.7141 47 1 8.1541 -1.1580 -1.5918 48 1 8.2338 -0.0718 -0.1891 49 1 4.3288 -2.8710 1.0151 50 1 3.5388 -3.2720 -0.5288 51 1 5.1205 -2.4556 -0.5240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036776334.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:22 Heat of formation + Delta-G solvation = 21.255927 kcal Electronic energy + Delta-G solvation = -31844.461844 eV Core-core repulsion = 27936.992842 eV Total energy + Delta-G solvation = -3907.469002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.14333 -39.73219 -38.11716 -35.25399 -34.37008 -33.94253 -32.56364 -31.42770 -29.75494 -29.19630 -28.39313 -27.92577 -27.32131 -25.07257 -23.77158 -22.67660 -22.31810 -21.25421 -20.09206 -20.02332 -18.23454 -17.51492 -17.08972 -16.84963 -16.20953 -15.21442 -15.07550 -14.84675 -14.76848 -14.43601 -14.25428 -13.80521 -13.57361 -13.44648 -13.41621 -13.16200 -13.01719 -12.99943 -12.77966 -12.64569 -12.42876 -12.27058 -12.03489 -11.95837 -11.81312 -11.71331 -11.59184 -11.35090 -11.10807 -10.85106 -10.75504 -10.19506 -10.12279 -9.92387 -9.79975 -9.70256 -9.61779 -9.60828 -9.43256 -8.89606 -8.65988 -8.48758 -6.88008 -5.73309 -3.07071 0.74964 1.05480 2.56590 3.03061 3.37012 3.42363 3.44309 3.46914 3.95171 4.35398 4.41733 4.44772 4.49398 4.87973 4.99785 5.08963 5.14538 5.21735 5.23746 5.29460 5.32243 5.34197 5.39658 5.42281 5.43472 5.47934 5.53532 5.58330 5.59850 5.67580 5.78902 5.84154 5.87039 5.91894 5.95815 5.99915 6.04540 6.09645 6.23113 6.25444 6.35343 6.46413 6.51706 6.57637 6.72408 6.86473 7.02525 7.45973 7.52958 7.60925 7.78826 7.80715 8.16192 8.21594 9.18460 9.78404 10.46081 11.37792 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.003303 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.525032 B = 8476.126425 C = 9164.934208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.182 4.182 4 C 0.004 3.996 5 C -0.127 4.127 6 C -0.178 4.178 7 C 0.575 3.425 8 O -0.538 6.538 9 N -0.593 5.593 10 C 0.108 3.892 11 C -0.142 4.142 12 C 0.167 3.833 13 H 0.061 0.939 14 C -0.114 4.114 15 H 0.082 0.918 16 C -0.136 4.136 17 C 0.180 3.820 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.126 3.874 28 C 0.169 3.831 29 C -0.108 4.108 30 N -0.490 5.490 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.034 0.966 46 H 0.251 0.749 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 -11.029 8.976 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.007 3.993 3 C -0.202 4.202 4 C -0.004 4.004 5 C -0.183 4.183 6 C -0.183 4.183 7 C 0.362 3.638 8 O -0.415 6.415 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.183 4.183 12 C 0.059 3.941 13 H 0.079 0.921 14 C -0.134 4.134 15 H 0.100 0.900 16 C -0.175 4.175 17 C 0.055 3.945 18 N -0.325 5.325 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.003 3.997 28 C 0.030 3.970 29 C -0.165 4.165 30 N -0.200 5.200 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.157 0.843 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.727 -11.569 9.396 19.599 hybrid contribution 0.484 1.371 -1.065 1.802 sum -12.243 -10.198 8.332 17.981 Atomic orbital electron populations 1.20739 0.88576 1.03532 1.03278 1.21370 0.97047 0.88073 0.92858 1.21764 0.93673 0.99532 1.05235 1.20352 0.93760 0.94555 0.91716 1.20982 1.00215 0.93129 1.03986 1.20588 0.94525 0.94599 1.08604 1.17934 0.86255 0.76006 0.83600 1.90783 1.69260 1.50579 1.30920 1.48088 1.07328 1.71455 1.05680 1.21840 0.96227 0.99989 0.83475 1.22528 0.99522 0.96549 0.99651 1.21150 0.90862 0.89695 0.92373 0.92126 1.21895 1.00355 0.94957 0.96179 0.89984 1.22779 1.00189 0.95411 0.99088 1.21190 1.00291 0.90921 0.82065 1.44935 1.78573 1.06750 1.02233 1.19033 1.38816 0.95808 0.81836 0.90544 1.24782 1.01740 0.96455 0.97424 1.69965 1.51577 1.05949 1.29319 0.86159 0.77320 0.78243 0.84263 1.21704 1.21745 1.20735 1.21036 0.78509 0.98425 1.01707 1.21232 0.88916 0.94487 0.92326 1.20782 0.99807 0.92277 1.03632 1.67341 1.08748 1.29142 1.14816 0.90137 0.90382 0.90572 0.84284 0.89331 0.90413 0.90556 0.91164 0.90929 0.91340 0.91472 0.92819 0.92397 0.93159 0.94785 0.93814 0.91729 0.89343 0.89856 0.89892 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.16 36.01 0.37 -0.41 16 2 C 0.14 1.59 6.78 -82.51 -0.56 1.03 16 3 C -0.18 -1.99 9.43 -39.50 -0.37 -2.36 16 4 C 0.00 0.05 5.91 -103.91 -0.61 -0.56 16 5 C -0.13 -1.56 9.69 36.00 0.35 -1.22 16 6 C -0.18 -2.47 3.68 -104.82 -0.39 -2.85 16 7 C 0.58 8.74 4.26 -12.33 -0.05 8.69 16 8 O -0.54 -9.77 16.57 5.31 0.09 -9.68 16 9 N -0.59 -8.36 2.80 -175.41 -0.49 -8.85 16 10 C 0.11 1.43 6.35 -3.78 -0.02 1.41 16 11 C -0.14 -2.33 5.22 -26.78 -0.14 -2.47 16 12 C 0.17 3.10 3.62 -66.19 -0.24 2.86 16 13 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.11 -1.89 2.89 -90.52 -0.26 -2.15 16 15 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 16 C -0.14 -2.52 5.89 -25.20 -0.15 -2.67 16 17 C 0.18 4.22 5.09 -2.75 -0.01 4.20 16 18 N -0.60 -14.31 2.88 -161.78 -0.47 -14.78 16 19 C -0.23 -6.02 10.30 -15.06 -0.16 -6.17 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -26.47 10.35 55.49 0.57 -25.89 16 23 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.13 1.79 5.84 -4.94 -0.03 1.76 16 28 C 0.17 2.20 6.81 -82.18 -0.56 1.64 16 29 C -0.11 -1.16 9.79 36.00 0.35 -0.81 16 30 N -0.49 -6.24 10.17 -5.42 -0.06 -6.30 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.09 1.14 7.77 -51.93 -0.40 0.74 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 1.08 7.19 -51.93 -0.37 0.71 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.23 6.55 -51.93 -0.34 0.89 16 42 H 0.05 0.98 7.41 -51.93 -0.38 0.59 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.33 7.24 -51.93 -0.38 0.96 16 45 H 0.03 0.89 7.67 -51.93 -0.40 0.49 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.07 0.81 7.07 -51.93 -0.37 0.45 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -31.63 396.96 -10.35 -41.98 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.38 Total: 1.33 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.58 Total: -0.40 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.44 Total: -55.82 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.63 -10.35 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036776334.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.237 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds