Wall clock time and date at job start Wed Apr 1 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38354 * 119.46214 * 2 1 4 4 C 1.38352 * 119.30632 * 180.02562 * 3 2 1 5 5 C 1.40026 * 118.28640 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.55796 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00093 * 324.68601 * 6 5 4 8 8 N 1.34779 * 120.00128 * 144.68487 * 6 5 4 9 9 C 1.46918 * 120.63391 * 174.36968 * 8 6 5 10 10 C 1.53195 * 108.77801 * 126.37170 * 9 8 6 11 11 C 1.53037 * 109.31115 * 54.63500 * 10 9 8 12 12 C 1.53003 * 109.45823 * 178.61571 * 11 10 9 13 13 H 1.08997 * 110.88427 * 59.30172 * 12 11 10 14 14 C 1.55156 * 111.00092 * 183.18207 * 12 11 10 15 15 C 1.54326 * 102.94180 * 153.57873 * 14 12 11 16 16 N 1.47021 * 107.26745 * 337.80661 * 15 14 12 17 17 C 1.36938 * 125.64662 * 178.90441 * 16 15 14 18 18 H 1.07999 * 120.00142 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00062 * 0.02562 * 17 16 15 20 20 N 1.31616 * 119.99652 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00109 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46861 * 90.00094 * 21 19 17 23 23 H 1.48501 * 109.47508 * 210.00055 * 21 19 17 24 24 H 1.48502 * 109.47126 * 330.00195 * 21 19 17 25 25 C 1.47464 * 108.72526 * 358.97154 * 16 15 14 26 26 C 1.53044 * 109.53911 * 298.63668 * 11 10 9 27 27 C 1.46921 * 120.62865 * 354.35182 * 8 6 5 28 28 C 1.39512 * 118.88385 * 0.25331 * 5 4 3 29 29 N 1.31693 * 120.56595 * 359.49727 * 28 5 4 30 30 H 1.09000 * 109.47478 * 90.00307 * 1 2 3 31 31 H 1.09005 * 109.47280 * 210.00413 * 1 2 3 32 32 H 1.09004 * 109.47423 * 330.00239 * 1 2 3 33 33 H 1.07998 * 120.34681 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.85678 * 180.02562 * 4 3 2 35 35 H 1.09011 * 109.58467 * 6.58399 * 9 8 6 36 36 H 1.08998 * 109.70927 * 246.23012 * 9 8 6 37 37 H 1.09003 * 109.49184 * 294.68772 * 10 9 8 38 38 H 1.08996 * 109.49984 * 174.58899 * 10 9 8 39 39 H 1.09000 * 109.45995 * 58.65860 * 11 10 9 40 40 H 1.09001 * 110.72227 * 271.93756 * 14 12 11 41 41 H 1.08994 * 110.72528 * 35.21214 * 14 12 11 42 42 H 1.08994 * 109.88424 * 97.21986 * 15 14 12 43 43 H 1.08999 * 109.88107 * 218.38538 * 15 14 12 44 44 H 0.97006 * 120.00054 * 179.97438 * 20 19 17 45 45 H 1.09004 * 110.35500 * 265.25707 * 25 16 15 46 46 H 1.08999 * 110.40373 * 142.91886 * 25 16 15 47 47 H 1.09000 * 109.49805 * 181.31482 * 26 11 10 48 48 H 1.09001 * 109.49821 * 301.41609 * 26 11 10 49 49 H 1.09009 * 109.58741 * 353.41284 * 27 8 6 50 50 H 1.08998 * 109.59147 * 113.69998 * 27 8 6 51 51 H 1.08000 * 119.71827 * 179.75032 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5709 1.2009 -0.0005 5 6 4.2311 -0.0340 -0.0005 6 6 5.7083 -0.0966 -0.0016 7 8 6.3514 0.7356 -0.6110 8 7 6.3418 -1.0764 0.6730 9 6 7.8005 -1.2258 0.5819 10 6 8.3845 -1.2367 1.9981 11 6 7.6917 -2.3238 2.8229 12 6 8.2965 -2.3608 4.2278 13 1 8.1786 -1.3991 4.7270 14 6 7.6744 -3.5051 5.0710 15 6 8.7895 -3.8314 6.0868 16 7 10.0570 -3.3605 5.5096 17 6 11.2859 -3.4430 6.1082 18 1 12.1608 -3.0660 5.5994 19 6 11.4071 -4.0112 7.3689 20 7 10.3410 -4.4711 7.9887 21 14 13.0835 -4.1245 8.1851 22 1 13.3276 -2.8985 8.9867 23 1 13.1219 -5.3131 9.0744 24 1 14.1339 -4.2518 7.1430 25 6 9.7862 -2.7829 4.1801 26 6 6.1954 -2.0173 2.9197 27 6 5.5867 -2.0152 1.5139 28 6 3.4716 -1.2042 -0.0054 29 7 2.1558 -1.1487 0.0001 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6443 2.1381 -0.0004 34 1 4.1274 2.1265 -0.0001 35 1 8.2190 -0.3904 0.0204 36 1 8.0434 -2.1620 0.0793 37 1 8.2219 -0.2658 2.4661 38 1 9.4537 -1.4430 1.9492 39 1 7.8338 -3.2911 2.3410 40 1 6.7751 -3.1622 5.5826 41 1 7.4571 -4.3708 4.4455 42 1 8.5965 -3.3160 7.0275 43 1 8.8354 -4.9076 6.2538 44 1 10.4257 -4.8685 8.8695 45 1 9.9440 -3.5304 3.4027 46 1 10.4212 -1.9141 4.0067 47 1 5.7065 -2.7792 3.5268 48 1 6.0534 -1.0390 3.3791 49 1 4.5444 -1.7007 1.5676 50 1 5.6448 -3.0164 1.0869 51 1 3.9669 -2.1640 -0.0095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039107809.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:24 Heat of formation + Delta-G solvation = 23.671300 kcal Electronic energy + Delta-G solvation = -29958.903689 eV Core-core repulsion = 26051.539426 eV Total energy + Delta-G solvation = -3907.364264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26981 -39.81370 -38.39043 -36.68857 -34.11936 -33.38525 -32.80973 -31.77038 -31.29767 -29.20590 -28.62611 -27.52924 -25.48199 -24.32819 -23.98255 -23.21353 -22.71366 -21.14318 -19.89706 -19.67909 -19.46520 -17.93519 -17.07030 -16.80209 -16.37742 -16.21872 -15.44862 -14.96795 -14.83789 -14.78301 -14.44042 -14.25316 -14.05743 -13.81220 -13.65314 -13.56139 -13.25637 -12.88984 -12.82230 -12.67981 -12.43096 -12.33015 -12.21634 -11.99185 -11.73782 -11.37758 -11.06371 -11.03507 -10.86701 -10.72633 -10.58298 -10.43558 -10.32386 -10.08692 -9.87200 -9.80402 -9.76824 -9.69613 -9.58210 -9.31361 -8.82174 -8.57284 -6.78879 -5.68364 -3.01291 0.29485 0.78706 2.43200 2.68695 3.33736 3.41148 3.46058 3.48005 3.74927 4.13543 4.24763 4.38652 4.51311 4.54372 4.60811 4.77253 4.79932 4.89109 4.97484 5.08032 5.12772 5.14238 5.17071 5.23733 5.37440 5.49288 5.51585 5.56951 5.59193 5.61993 5.63829 5.66734 5.68826 5.81165 5.90310 5.98657 6.00729 6.12058 6.15215 6.18643 6.34063 6.39499 6.46430 6.58742 6.62848 6.79071 7.02333 7.10612 7.44707 7.59550 7.67482 7.84835 7.86020 8.29900 9.25741 9.86455 10.53121 11.43362 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023685 B = 0.002066 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.893700 B =13551.363929 C =14308.245233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.145 3.855 3 C -0.178 4.178 4 C -0.018 4.018 5 C -0.189 4.189 6 C 0.565 3.435 7 O -0.537 6.537 8 N -0.601 5.601 9 C 0.112 3.888 10 C -0.129 4.129 11 C -0.074 4.074 12 C -0.096 4.096 13 H 0.071 0.929 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.607 5.607 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.142 3.858 26 C -0.128 4.128 27 C 0.092 3.908 28 C 0.135 3.865 29 N -0.487 5.487 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.251 0.749 45 H 0.017 0.983 46 H 0.035 0.965 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.076 0.924 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.542 8.643 -17.339 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.198 4.198 4 C -0.044 4.044 5 C -0.194 4.194 6 C 0.352 3.648 7 O -0.415 6.415 8 N -0.333 5.333 9 C -0.010 4.010 10 C -0.167 4.167 11 C -0.093 4.093 12 C -0.116 4.116 13 H 0.089 0.911 14 C -0.176 4.176 15 C 0.052 3.948 16 N -0.334 5.334 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.016 3.984 26 C -0.166 4.166 27 C -0.030 4.030 28 C -0.023 4.023 29 N -0.197 5.197 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.053 0.947 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.107 0.893 50 H 0.094 0.906 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.568 8.214 -17.450 27.475 hybrid contribution 1.436 0.623 0.648 1.694 sum -18.132 8.837 -16.802 26.252 Atomic orbital electron populations 1.20795 0.88369 1.03933 1.03439 1.21563 0.97409 0.88305 0.91870 1.21960 0.94432 0.99655 1.03765 1.21672 0.94160 0.97609 0.90963 1.20941 0.94613 0.95728 1.08150 1.18087 0.86668 0.80869 0.79129 1.90782 1.67295 1.39009 1.44423 1.48025 1.08354 1.30755 1.46213 1.21721 0.78275 1.02808 0.98193 1.21991 1.00697 0.99849 0.94180 1.21106 0.93523 0.98543 0.96104 1.22347 0.96809 0.98899 0.93496 0.91091 1.22902 0.99036 0.97037 0.98666 1.21124 0.82251 0.98464 0.92919 1.44505 1.04203 1.70029 1.14621 1.19065 0.84359 1.33461 0.98572 0.90545 1.24805 0.97402 1.01115 0.97351 1.69975 1.26707 1.45599 1.14779 0.86128 0.83276 0.77178 0.79249 1.21666 1.21706 1.20726 1.21562 0.92528 0.95320 0.88970 1.21980 0.96540 1.02889 0.95213 1.22295 0.96160 0.93081 0.91473 1.23237 0.89287 0.97837 0.91930 1.67602 1.09374 1.29135 1.13558 0.89973 0.90044 0.90356 0.84006 0.83810 0.88979 0.91089 0.91543 0.89981 0.90900 0.92544 0.92627 0.93859 0.94204 0.93847 0.96574 0.94684 0.90023 0.91546 0.89278 0.90600 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.16 36.00 0.37 -0.16 16 2 C 0.15 1.15 6.78 -82.51 -0.56 0.59 16 3 C -0.18 -1.28 9.72 -39.50 -0.38 -1.66 16 4 C -0.02 -0.16 9.76 -38.87 -0.38 -0.54 16 5 C -0.19 -1.92 5.29 -104.82 -0.55 -2.48 16 6 C 0.56 6.82 7.40 -12.33 -0.09 6.73 16 7 O -0.54 -8.20 16.30 5.32 0.09 -8.12 16 8 N -0.60 -6.38 2.97 -173.88 -0.52 -6.90 16 9 C 0.11 1.20 6.44 -3.71 -0.02 1.18 16 10 C -0.13 -1.50 5.21 -26.61 -0.14 -1.64 16 11 C -0.07 -0.91 1.65 -90.58 -0.15 -1.06 16 12 C -0.10 -1.57 2.56 -88.47 -0.23 -1.80 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.14 -2.47 5.42 -24.90 -0.13 -2.60 16 15 C 0.18 4.30 5.37 -3.06 -0.02 4.29 16 16 N -0.61 -15.60 3.40 -170.04 -0.58 -16.18 16 17 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 21 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.14 2.87 5.80 -2.51 -0.01 2.86 16 26 C -0.13 -1.34 5.20 -26.61 -0.14 -1.47 16 27 C 0.09 0.81 4.80 -3.71 -0.02 0.80 16 28 C 0.14 1.24 8.55 -17.14 -0.15 1.10 16 29 N -0.49 -4.68 10.25 -9.14 -0.09 -4.78 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.14 1.18 8.05 -52.48 -0.42 0.76 16 35 H 0.09 1.08 7.00 -51.92 -0.36 0.72 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.98 7.32 -51.93 -0.38 0.60 16 39 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 40 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 42 H 0.04 1.17 7.38 -51.93 -0.38 0.79 16 43 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 46 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 47 H 0.08 0.82 7.32 -51.93 -0.38 0.44 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.73 4.46 -51.92 -0.23 0.50 16 50 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 51 H 0.17 1.25 6.07 -52.49 -0.32 0.93 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -33.85 394.61 -10.77 -44.62 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.31 Total: -2.26 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.86 Total: -2.81 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.62 Total: -54.70 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.85 -10.77 -44.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039107809.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.293 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds