Wall clock time and date at job start Wed Apr 1 2020 02:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38353 * 120.35122 * 2 1 4 4 N 1.31919 * 121.08444 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.87615 * 0.02562 * 4 3 2 6 6 C 1.39521 * 120.56646 * 359.97438 * 5 4 3 7 7 C 1.47849 * 120.55641 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99781 * 40.68179 * 7 6 5 9 9 N 1.34773 * 119.99886 * 220.67891 * 7 6 5 10 10 C 1.46929 * 120.63217 * 185.55136 * 9 7 6 11 11 C 1.52763 * 109.00654 * 233.58721 * 10 9 7 12 12 C 1.53036 * 109.38374 * 305.58251 * 11 10 9 13 13 C 1.52998 * 109.46043 * 181.26214 * 12 11 10 14 14 H 1.09001 * 110.64038 * 299.23373 * 13 12 11 15 15 C 1.55161 * 110.71989 * 62.37776 * 13 12 11 16 16 C 1.55114 * 101.48550 * 153.73792 * 15 13 12 17 17 N 1.47431 * 104.94386 * 323.21701 * 16 15 13 18 18 C 1.36933 * 125.64957 * 203.97387 * 17 16 15 19 19 H 1.08001 * 119.99553 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00202 * 0.03917 * 18 17 16 21 21 N 1.31615 * 119.99793 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00107 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46752 * 60.00263 * 22 20 18 24 24 H 1.48495 * 109.47163 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47144 * 300.00576 * 22 20 18 26 26 C 1.47026 * 108.69782 * 24.00629 * 17 16 15 27 27 C 1.53042 * 109.53732 * 61.24336 * 12 11 10 28 28 C 1.46930 * 120.63075 * 5.83171 * 9 7 6 29 29 C 1.38356 * 120.34900 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.46958 * 269.97912 * 1 2 3 31 31 H 1.09001 * 109.46623 * 29.97438 * 1 2 3 32 32 H 1.08995 * 109.47257 * 149.97329 * 1 2 3 33 33 H 1.08005 * 119.45747 * 0.02705 * 3 2 1 34 34 H 1.08005 * 119.71884 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.58166 * 353.41829 * 10 9 7 36 36 H 1.08992 * 109.58699 * 113.84469 * 10 9 7 37 37 H 1.09002 * 109.55679 * 185.55067 * 11 10 9 38 38 H 1.08996 * 109.36297 * 65.49956 * 11 10 9 39 39 H 1.08994 * 109.46644 * 301.22604 * 12 11 10 40 40 H 1.09005 * 110.99779 * 271.94189 * 15 13 12 41 41 H 1.08991 * 111.00097 * 35.78838 * 15 13 12 42 42 H 1.09002 * 110.41923 * 204.29548 * 16 15 13 43 43 H 1.08991 * 110.30852 * 82.09037 * 16 15 13 44 44 H 0.97005 * 119.99758 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.88173 * 239.52078 * 26 17 16 46 46 H 1.09003 * 110.00406 * 118.43081 * 26 17 16 47 47 H 1.08994 * 109.49828 * 178.67770 * 27 12 11 48 48 H 1.09002 * 109.49933 * 58.58319 * 27 12 11 49 49 H 1.08995 * 109.59001 * 246.15197 * 28 9 7 50 50 H 1.08995 * 109.58627 * 6.43957 * 28 9 7 51 51 H 1.08001 * 120.84901 * 359.70540 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2062 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2350 0.1014 -0.0015 6 6 3.6054 -1.1436 -0.0016 7 6 4.4024 -2.3889 -0.0022 8 8 5.4026 -2.4706 0.6837 9 7 4.0198 -3.4335 -0.7631 10 6 4.7296 -4.7174 -0.6834 11 6 5.1651 -5.1331 -2.0874 12 6 3.9475 -5.1443 -3.0144 13 6 4.3762 -5.5908 -4.4136 14 1 5.1141 -4.9033 -4.8270 15 6 4.9323 -7.0389 -4.3813 16 6 4.6484 -7.5112 -5.8313 17 7 3.3543 -6.8993 -6.1839 18 6 2.4837 -7.3646 -7.1329 19 1 1.5567 -6.8421 -7.3178 20 6 2.7924 -8.5078 -7.8572 21 7 3.9218 -9.1448 -7.6313 22 14 1.6044 -9.1429 -9.1513 23 1 1.4034 -8.1025 -10.1918 24 1 2.1636 -10.3675 -9.7782 25 1 0.3022 -9.4631 -8.5134 26 6 3.1537 -5.7063 -5.3482 27 6 3.3483 -3.7380 -3.0892 28 6 2.8888 -3.3080 -1.6925 29 6 2.2061 -1.1940 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6630 2.1274 0.0004 34 1 5.3136 0.1559 -0.0015 35 1 5.6077 -4.6105 -0.0466 36 1 4.0660 -5.4767 -0.2698 37 1 5.6051 -6.1298 -2.0528 38 1 5.9015 -4.4226 -2.4625 39 1 3.2010 -5.8366 -2.6253 40 1 6.0014 -7.0421 -4.1686 41 1 4.3902 -7.6496 -3.6595 42 1 4.5771 -8.5981 -5.8701 43 1 5.4304 -7.1588 -6.5038 44 1 4.1377 -9.9436 -8.1377 45 1 2.2444 -5.8162 -4.7574 46 1 3.0822 -4.8186 -5.9767 47 1 2.4955 -3.7415 -3.7679 48 1 4.1019 -3.0404 -3.4549 49 1 2.0720 -3.9501 -1.3630 50 1 2.5511 -2.2721 -1.7195 51 1 1.6858 -2.1404 0.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039114235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:12 Heat of formation + Delta-G solvation = 19.838008 kcal Electronic energy + Delta-G solvation = -30147.344597 eV Core-core repulsion = 26239.814109 eV Total energy + Delta-G solvation = -3907.530488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24502 -39.82137 -38.40391 -36.68029 -34.28818 -33.80960 -32.80315 -31.68076 -31.08078 -29.20662 -27.78348 -27.75598 -25.77145 -24.62609 -23.71820 -23.54260 -22.59980 -21.01979 -20.01555 -19.48208 -19.32922 -17.64524 -17.40676 -16.93281 -16.83762 -16.23739 -15.39553 -15.02995 -14.68696 -14.54358 -14.41966 -14.22663 -13.98406 -13.80385 -13.70625 -13.62941 -13.26722 -13.03348 -12.99734 -12.89572 -12.45346 -12.35791 -12.32474 -11.74799 -11.60538 -11.42434 -11.20957 -11.06438 -10.92384 -10.78226 -10.54149 -10.46524 -10.16699 -10.12775 -9.92057 -9.80789 -9.77841 -9.66966 -9.44204 -9.37759 -8.84022 -8.63776 -6.81608 -5.64480 -3.06080 0.34591 0.74050 2.40287 2.68150 3.35525 3.39418 3.43558 3.45116 3.89800 4.15889 4.27201 4.36352 4.48564 4.49226 4.60357 4.63293 4.77797 4.82529 4.97486 5.10730 5.10966 5.12624 5.19517 5.24156 5.35849 5.46016 5.46887 5.52534 5.59807 5.62273 5.65434 5.67139 5.69310 5.82390 5.86892 5.92220 6.00869 6.11752 6.14956 6.19109 6.37498 6.37874 6.43224 6.61917 6.65569 6.79770 7.00229 7.08360 7.48168 7.54327 7.63296 7.82877 7.87621 8.38179 9.23242 9.84628 10.50346 11.39161 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.002291 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.138888 B =12221.032822 C =13369.498594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.143 4.143 3 C 0.117 3.883 4 N -0.482 5.482 5 C 0.146 3.854 6 C -0.174 4.174 7 C 0.565 3.435 8 O -0.535 6.535 9 N -0.601 5.601 10 C 0.112 3.888 11 C -0.128 4.128 12 C -0.074 4.074 13 C -0.094 4.094 14 H 0.067 0.933 15 C -0.138 4.138 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.143 3.857 27 C -0.131 4.131 28 C 0.098 3.902 29 C -0.047 4.047 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.009 0.991 44 H 0.252 0.748 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 16.625 17.502 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.145 4.145 3 C -0.040 4.040 4 N -0.189 5.189 5 C -0.012 4.012 6 C -0.179 4.179 7 C 0.352 3.648 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.092 4.092 13 C -0.113 4.113 14 H 0.086 0.914 15 C -0.177 4.177 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.017 3.983 27 C -0.169 4.169 28 C -0.025 4.025 29 C -0.073 4.073 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.358 17.192 17.700 24.903 hybrid contribution -1.063 -1.114 -0.870 1.769 sum -4.421 16.078 16.830 23.692 Atomic orbital electron populations 1.20755 0.89484 1.03673 1.02939 1.20921 0.98036 0.93724 1.01857 1.22933 0.89985 0.97739 0.93362 1.67781 1.08031 1.30773 1.12335 1.22906 1.00706 0.85936 0.91636 1.20963 0.94589 0.95608 1.06783 1.18113 0.84184 0.82682 0.79825 1.90794 1.25616 1.82189 1.42639 1.48048 1.33122 1.12075 1.40079 1.21630 0.97624 0.83310 0.98436 1.21900 0.98394 1.02444 0.93869 1.21137 0.96800 0.95758 0.95547 1.22171 0.98087 0.97535 0.93488 0.91442 1.23068 0.98764 0.94833 1.01019 1.21947 0.86029 1.01379 0.88008 1.44509 1.19847 1.26532 1.42209 1.19027 0.98761 1.06583 1.10713 0.90663 1.24787 0.97572 0.98211 1.00184 1.69799 1.23225 1.20594 1.43518 0.86166 0.79998 0.78126 0.81288 1.21256 1.21572 1.21186 1.21293 0.94648 0.90456 0.91876 1.22011 1.01898 0.97574 0.95381 1.22143 0.88245 1.02333 0.89742 1.21777 0.92560 0.99052 0.93915 0.90630 0.90777 0.90881 0.82294 0.81859 0.88946 0.91199 0.90019 0.91597 0.90853 0.92598 0.92281 0.87789 0.97320 0.93724 0.96123 0.96622 0.89961 0.91518 0.90894 0.89521 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.03 36.01 0.36 -0.09 16 2 C -0.14 -0.97 5.89 -104.53 -0.62 -1.59 16 3 C 0.12 0.90 10.85 -17.47 -0.19 0.71 16 4 N -0.48 -4.91 10.35 -12.91 -0.13 -5.04 16 5 C 0.15 1.52 10.82 -17.13 -0.19 1.34 16 6 C -0.17 -1.77 5.11 -104.82 -0.54 -2.30 16 7 C 0.56 6.78 7.34 -12.33 -0.09 6.69 16 8 O -0.53 -8.13 16.37 5.32 0.09 -8.05 16 9 N -0.60 -6.34 2.98 -174.14 -0.52 -6.86 16 10 C 0.11 1.18 6.41 -3.93 -0.03 1.16 16 11 C -0.13 -1.44 5.17 -26.83 -0.14 -1.58 16 12 C -0.07 -0.92 1.53 -90.58 -0.14 -1.05 16 13 C -0.09 -1.53 2.48 -88.79 -0.22 -1.75 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.14 -2.52 5.50 -24.47 -0.13 -2.65 16 16 C 0.15 3.66 5.89 -2.41 -0.01 3.65 16 17 N -0.61 -15.43 3.40 -169.94 -0.58 -16.01 16 18 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -26.96 10.09 55.49 0.56 -26.40 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.14 2.88 5.89 -3.06 -0.02 2.86 16 27 C -0.13 -1.41 5.20 -26.61 -0.14 -1.54 16 28 C 0.10 0.87 4.96 -3.71 -0.02 0.85 16 29 C -0.05 -0.37 7.19 -38.87 -0.28 -0.65 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 32 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.91 7.27 -51.93 -0.38 0.54 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 40 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 42 H 0.10 2.84 5.87 -51.93 -0.30 2.53 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.41 7.67 -51.93 -0.40 0.01 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.90 7.27 -51.93 -0.38 0.52 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 50 H 0.09 0.69 4.76 -51.93 -0.25 0.44 16 51 H 0.14 0.89 6.73 -52.49 -0.35 0.54 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -33.08 394.47 -10.59 -43.67 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -8.30 Total: -1.49 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.63 Total: -2.74 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.67 Total: -54.30 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.08 -10.59 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039114235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.510 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds