Wall clock time and date at job start Wed Apr 1 2020 02:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38353 * 120.35122 * 2 1 4 4 N 1.31919 * 121.08444 * 180.02562 * 3 2 1 5 5 C 1.31696 * 121.87615 * 0.02562 * 4 3 2 6 6 C 1.39521 * 120.56646 * 359.97438 * 5 4 3 7 7 C 1.47849 * 120.55641 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99781 * 40.68179 * 7 6 5 9 9 N 1.34773 * 119.99886 * 220.67891 * 7 6 5 10 10 C 1.46929 * 120.63217 * 185.55136 * 9 7 6 11 11 C 1.52763 * 109.00654 * 233.58721 * 10 9 7 12 12 C 1.53036 * 109.38374 * 305.58251 * 11 10 9 13 13 C 1.52998 * 109.46043 * 181.26214 * 12 11 10 14 14 H 1.09001 * 110.64038 * 299.23373 * 13 12 11 15 15 C 1.55161 * 110.71989 * 62.37776 * 13 12 11 16 16 C 1.55114 * 101.48550 * 153.73792 * 15 13 12 17 17 N 1.47431 * 104.94386 * 323.21701 * 16 15 13 18 18 C 1.36933 * 125.64957 * 203.97387 * 17 16 15 19 19 H 1.08001 * 119.99553 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00202 * 0.03917 * 18 17 16 21 21 N 1.31615 * 119.99793 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00107 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46752 * 60.00263 * 22 20 18 24 24 H 1.48495 * 109.47163 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47144 * 300.00576 * 22 20 18 26 26 C 1.47026 * 108.69782 * 24.00629 * 17 16 15 27 27 C 1.53042 * 109.53732 * 61.24336 * 12 11 10 28 28 C 1.46930 * 120.63075 * 5.83171 * 9 7 6 29 29 C 1.38356 * 120.34900 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.46958 * 269.97912 * 1 2 3 31 31 H 1.09001 * 109.46623 * 29.97438 * 1 2 3 32 32 H 1.08995 * 109.47257 * 149.97329 * 1 2 3 33 33 H 1.08005 * 119.45747 * 0.02705 * 3 2 1 34 34 H 1.08005 * 119.71884 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.58166 * 353.41829 * 10 9 7 36 36 H 1.08992 * 109.58699 * 113.84469 * 10 9 7 37 37 H 1.09002 * 109.55679 * 185.55067 * 11 10 9 38 38 H 1.08996 * 109.36297 * 65.49956 * 11 10 9 39 39 H 1.08994 * 109.46644 * 301.22604 * 12 11 10 40 40 H 1.09005 * 110.99779 * 271.94189 * 15 13 12 41 41 H 1.08991 * 111.00097 * 35.78838 * 15 13 12 42 42 H 1.09002 * 110.41923 * 204.29548 * 16 15 13 43 43 H 1.08991 * 110.30852 * 82.09037 * 16 15 13 44 44 H 0.97005 * 119.99758 * 180.02562 * 21 20 18 45 45 H 1.08993 * 109.88173 * 239.52078 * 26 17 16 46 46 H 1.09003 * 110.00406 * 118.43081 * 26 17 16 47 47 H 1.08994 * 109.49828 * 178.67770 * 27 12 11 48 48 H 1.09002 * 109.49933 * 58.58319 * 27 12 11 49 49 H 1.08995 * 109.59001 * 246.15197 * 28 9 7 50 50 H 1.08995 * 109.58627 * 6.43957 * 28 9 7 51 51 H 1.08001 * 120.84901 * 359.70540 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2062 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2350 0.1014 -0.0015 6 6 3.6054 -1.1436 -0.0016 7 6 4.4024 -2.3889 -0.0022 8 8 5.4026 -2.4706 0.6837 9 7 4.0198 -3.4335 -0.7631 10 6 4.7296 -4.7174 -0.6834 11 6 5.1651 -5.1331 -2.0874 12 6 3.9475 -5.1443 -3.0144 13 6 4.3762 -5.5908 -4.4136 14 1 5.1141 -4.9033 -4.8270 15 6 4.9323 -7.0389 -4.3813 16 6 4.6484 -7.5112 -5.8313 17 7 3.3543 -6.8993 -6.1839 18 6 2.4837 -7.3646 -7.1329 19 1 1.5567 -6.8421 -7.3178 20 6 2.7924 -8.5078 -7.8572 21 7 3.9218 -9.1448 -7.6313 22 14 1.6044 -9.1429 -9.1513 23 1 1.4034 -8.1025 -10.1918 24 1 2.1636 -10.3675 -9.7782 25 1 0.3022 -9.4631 -8.5134 26 6 3.1537 -5.7063 -5.3482 27 6 3.3483 -3.7380 -3.0892 28 6 2.8888 -3.3080 -1.6925 29 6 2.2061 -1.1940 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6630 2.1274 0.0004 34 1 5.3136 0.1559 -0.0015 35 1 5.6077 -4.6105 -0.0466 36 1 4.0660 -5.4767 -0.2698 37 1 5.6051 -6.1298 -2.0528 38 1 5.9015 -4.4226 -2.4625 39 1 3.2010 -5.8366 -2.6253 40 1 6.0014 -7.0421 -4.1686 41 1 4.3902 -7.6496 -3.6595 42 1 4.5771 -8.5981 -5.8701 43 1 5.4304 -7.1588 -6.5038 44 1 4.1377 -9.9436 -8.1377 45 1 2.2444 -5.8162 -4.7574 46 1 3.0822 -4.8186 -5.9767 47 1 2.4955 -3.7415 -3.7679 48 1 4.1019 -3.0404 -3.4549 49 1 2.0720 -3.9501 -1.3630 50 1 2.5511 -2.2721 -1.7195 51 1 1.6858 -2.1404 0.0038 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039114235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:11 Heat of formation + Delta-G solvation = 0.866969 kcal Electronic energy + Delta-G solvation = -30148.167243 eV Core-core repulsion = 26239.814109 eV Total energy + Delta-G solvation = -3908.353134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.00112 -40.65315 -39.64504 -37.98052 -35.40362 -34.63823 -33.87461 -33.05608 -31.95165 -30.90363 -29.24428 -28.21775 -27.12089 -25.92627 -24.60103 -24.55787 -23.41549 -21.98751 -21.81055 -20.79477 -20.21098 -18.86168 -18.44150 -18.01691 -17.64619 -17.11939 -16.82171 -16.30358 -16.11472 -15.71280 -15.29545 -15.20118 -15.04780 -14.70692 -14.49163 -14.40424 -14.25880 -14.11607 -14.07582 -13.58061 -13.41300 -13.40632 -13.29426 -13.21816 -12.91164 -12.80732 -12.68007 -12.49980 -12.24378 -12.18330 -12.03908 -11.81863 -11.57033 -11.37391 -11.28958 -11.13020 -11.06955 -10.72494 -10.67758 -10.45562 -9.99105 -9.70102 -8.85774 -7.75696 -5.20015 -0.32037 0.13233 1.46397 1.49713 1.55161 1.56137 1.87958 2.50792 2.69464 3.21203 3.33323 3.50253 3.66916 3.69604 3.73070 3.78605 3.81381 3.90060 3.93041 4.07922 4.17060 4.23275 4.30987 4.41692 4.46125 4.47025 4.54639 4.58432 4.73077 4.75586 4.78665 4.85104 4.87136 4.88261 4.92466 4.95289 4.97883 5.08173 5.15541 5.18876 5.20319 5.23901 5.27304 5.41698 5.46400 5.52455 5.58533 5.61805 5.69921 5.85332 6.24524 6.33543 6.83719 6.95915 7.12695 7.81847 8.46131 9.25986 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.002291 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.138888 B =12221.032822 C =13369.498594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.134 4.134 3 C 0.111 3.889 4 N -0.505 5.505 5 C 0.128 3.872 6 C -0.187 4.187 7 C 0.563 3.437 8 O -0.577 6.577 9 N -0.597 5.597 10 C 0.114 3.886 11 C -0.121 4.121 12 C -0.064 4.064 13 C -0.079 4.079 14 H 0.066 0.934 15 C -0.122 4.122 16 C 0.151 3.849 17 N -0.629 5.629 18 C -0.238 4.238 19 H 0.081 0.919 20 C -0.071 4.071 21 N -0.951 5.951 22 Si 0.980 3.020 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.140 3.860 27 C -0.127 4.127 28 C 0.101 3.899 29 C -0.046 4.046 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.187 0.813 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.069 0.931 43 H -0.022 1.022 44 H 0.246 0.754 45 H 0.033 0.967 46 H 0.014 0.986 47 H 0.085 0.915 48 H 0.058 0.942 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 17.727 18.584 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.046 4.046 4 N -0.213 5.213 5 C -0.029 4.029 6 C -0.192 4.192 7 C 0.352 3.648 8 O -0.457 6.457 9 N -0.329 5.329 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.082 4.082 13 C -0.098 4.098 14 H 0.084 0.916 15 C -0.160 4.160 16 C 0.025 3.975 17 N -0.355 5.355 18 C -0.367 4.367 19 H 0.099 0.901 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.808 3.192 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.015 3.985 27 C -0.166 4.166 28 C -0.020 4.020 29 C -0.072 4.072 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.204 0.796 34 H 0.172 0.828 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.087 0.913 43 H -0.004 1.004 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.115 0.885 50 H 0.118 0.882 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.098 18.319 18.787 26.939 hybrid contribution -0.257 -1.391 -1.236 1.878 sum -6.355 16.928 17.551 25.199 Atomic orbital electron populations 1.20846 0.87062 1.04880 1.03918 1.21241 0.99580 0.92834 0.99895 1.23482 0.89313 0.99468 0.92301 1.67776 1.09464 1.30747 1.13267 1.22845 1.00667 0.86538 0.92879 1.20841 0.95569 0.94408 1.08352 1.18409 0.83742 0.83321 0.79315 1.90766 1.27503 1.82952 1.44515 1.48121 1.33292 1.11677 1.39780 1.21610 0.97800 0.83778 0.97635 1.21817 0.97615 1.02482 0.93986 1.21034 0.97400 0.96869 0.92937 1.22071 0.96294 0.96278 0.95132 0.91590 1.22897 1.00418 0.95869 0.96829 1.21757 0.85127 0.99358 0.91212 1.44856 1.19764 1.28346 1.42525 1.19443 0.99366 1.06685 1.11229 0.90087 1.25657 0.99342 0.98736 1.02559 1.70072 1.24924 1.20739 1.44386 0.85126 0.78175 0.77150 0.78740 1.20560 1.22114 1.19982 1.21493 0.96811 0.88326 0.91894 1.21962 1.01687 0.96136 0.96771 1.22256 0.88009 1.03692 0.88054 1.22018 0.91484 1.00452 0.93237 0.89598 0.89408 0.89921 0.79630 0.82800 0.90091 0.89384 0.89634 0.92505 0.90329 0.90469 0.91493 0.91262 1.00447 0.94452 0.94863 0.96776 0.89675 0.92329 0.88526 0.88247 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.03 71.24 0.71 0.27 16 2 C -0.13 -1.40 5.89 -19.81 -0.12 -1.52 16 3 C 0.11 1.47 10.85 84.71 0.92 2.39 16 4 N -0.50 -9.92 10.35 -194.75 -2.01 -11.94 16 5 C 0.13 2.69 10.82 85.02 0.92 3.61 16 6 C -0.19 -3.60 5.11 -19.99 -0.10 -3.70 16 7 C 0.56 13.14 7.34 86.79 0.64 13.78 16 8 O -0.58 -17.83 16.37 -3.88 -0.06 -17.89 16 9 N -0.60 -11.44 2.98 -823.15 -2.45 -13.89 16 10 C 0.11 2.19 6.41 86.22 0.55 2.74 16 11 C -0.12 -2.49 5.17 30.53 0.16 -2.33 16 12 C -0.06 -1.42 1.53 -10.77 -0.02 -1.44 16 13 C -0.08 -2.45 2.48 -9.61 -0.02 -2.48 16 14 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.12 -4.32 5.50 32.06 0.18 -4.15 16 16 C 0.15 7.48 5.89 86.93 0.51 7.99 16 17 N -0.63 -32.34 3.40 -691.57 -2.35 -34.68 16 18 C -0.24 -13.35 10.27 84.03 0.86 -12.49 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 20 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 21 N -0.95 -57.28 10.09 21.65 0.22 -57.06 16 22 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.14 5.46 5.89 86.73 0.51 5.97 16 27 C -0.13 -2.41 5.20 30.67 0.16 -2.25 16 28 C 0.10 1.47 4.96 86.36 0.43 1.90 16 29 C -0.05 -0.60 7.19 22.73 0.16 -0.44 16 30 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 0.16 8.09 -2.39 -0.02 0.14 16 32 H 0.08 0.23 8.09 -2.39 -0.02 0.21 16 33 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 35 H 0.08 1.80 7.00 -2.39 -0.02 1.78 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.72 7.27 -2.39 -0.02 1.70 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.75 8.11 -2.39 -0.02 1.73 16 40 H 0.08 2.42 8.08 -2.38 -0.02 2.40 16 41 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 42 H 0.07 3.94 5.87 -2.39 -0.01 3.92 16 43 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 44 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 45 H 0.03 1.23 7.67 -2.39 -0.02 1.21 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 1.60 7.27 -2.39 -0.02 1.58 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.10 1.03 8.13 -2.39 -0.02 1.01 16 50 H 0.10 1.25 4.76 -2.39 -0.01 1.23 16 51 H 0.16 1.40 6.73 -2.91 -0.02 1.38 16 Total: -1.00 -74.73 394.47 3.20 -71.53 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.91 Total: 12.08 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.92 Total: 4.30 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -6.60 Total: -117.57 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.06 Total: -17.89 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -74.73 3.20 -71.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039114235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.397 kcal (2) G-P(sol) polarization free energy of solvation -74.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds