Wall clock time and date at job start Wed Apr 1 2020 03:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38395 * 120.85357 * 2 1 4 4 C 1.38311 * 119.30457 * 180.29264 * 3 2 1 5 5 N 1.31963 * 121.07805 * 359.67778 * 4 3 2 6 6 C 1.31656 * 121.87824 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.57036 * 0.02562 * 6 5 4 8 8 C 1.47843 * 120.56224 * 180.02562 * 7 6 5 9 9 O 1.21554 * 120.00328 * 126.04686 * 8 7 6 10 10 N 1.34778 * 119.99565 * 306.04557 * 8 7 6 11 11 C 1.46932 * 120.62868 * 174.24483 * 10 8 7 12 12 C 1.53185 * 108.77534 * 126.36948 * 11 10 8 13 13 C 1.53032 * 109.31577 * 54.63642 * 12 11 10 14 14 C 1.52999 * 109.46546 * 178.61505 * 13 12 11 15 15 H 1.09001 * 110.64290 * 59.29444 * 14 13 12 16 16 C 1.55153 * 110.72439 * 182.44219 * 14 13 12 17 17 C 1.55128 * 101.48641 * 153.73385 * 16 14 13 18 18 N 1.47424 * 104.94091 * 323.21783 * 17 16 14 19 19 C 1.36929 * 125.64732 * 204.03770 * 18 17 16 20 20 H 1.08006 * 119.99996 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00363 * 359.96442 * 19 18 17 22 22 N 1.31623 * 119.99759 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00348 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47004 * 119.99925 * 23 21 19 26 26 H 1.48502 * 109.46852 * 239.99928 * 23 21 19 27 27 C 1.47020 * 108.70454 * 24.00809 * 18 17 16 28 28 C 1.53045 * 109.53542 * 298.63396 * 13 12 11 29 29 C 1.46921 * 120.63462 * 354.22018 * 10 8 7 30 30 H 1.08995 * 109.47444 * 275.19114 * 1 2 3 31 31 H 1.09000 * 109.47104 * 35.19652 * 1 2 3 32 32 H 1.09004 * 109.46832 * 155.19002 * 1 2 3 33 33 H 1.08001 * 120.35290 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.46022 * 179.70370 * 4 3 2 35 35 H 1.08005 * 119.71435 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.58350 * 6.57809 * 11 10 8 37 37 H 1.08995 * 109.58632 * 246.15777 * 11 10 8 38 38 H 1.09005 * 109.49538 * 174.59193 * 12 11 10 39 39 H 1.09000 * 109.49795 * 294.68226 * 12 11 10 40 40 H 1.09000 * 109.46533 * 58.65219 * 13 12 11 41 41 H 1.09002 * 111.00403 * 271.93456 * 16 14 13 42 42 H 1.08998 * 111.00638 * 35.78842 * 16 14 13 43 43 H 1.09001 * 110.41514 * 204.29166 * 17 16 14 44 44 H 1.09000 * 110.20803 * 82.04268 * 17 16 14 45 45 H 0.96998 * 119.99752 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.88231 * 239.52370 * 27 18 17 47 47 H 1.08998 * 110.01249 * 118.42567 * 27 18 17 48 48 H 1.09011 * 109.49505 * 181.31743 * 28 13 12 49 49 H 1.08996 * 109.49630 * 301.41199 * 28 13 12 50 50 H 1.08999 * 109.58715 * 113.84389 * 29 10 8 51 51 H 1.08997 * 109.58463 * 353.42059 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0062 5 7 4.2498 0.0025 -0.0057 6 6 3.6198 -1.1535 0.0002 7 6 2.2250 -1.2017 0.0055 8 6 1.5177 -2.4999 0.0127 9 8 0.6861 -2.7343 0.8677 10 7 1.7949 -3.4234 -0.9290 11 6 1.1949 -4.7630 -0.8632 12 6 0.5010 -5.0584 -2.1966 13 6 1.5013 -4.8733 -3.3398 14 6 0.8211 -5.2010 -4.6705 15 1 -0.0394 -4.5518 -4.8324 16 6 1.8274 -5.0819 -5.8454 17 6 1.2099 -6.0579 -6.8811 18 7 0.6706 -7.1714 -6.0796 19 6 0.4562 -8.4472 -6.5284 20 1 0.0560 -9.1949 -5.8596 21 6 0.7531 -8.7796 -7.8430 22 7 1.2402 -7.8683 -8.6583 23 14 0.4613 -10.5202 -8.4551 24 1 -0.0886 -11.3474 -7.3512 25 1 -0.5056 -10.4932 -9.5818 26 1 1.7458 -11.1036 -8.9190 27 6 0.4016 -6.6855 -4.7183 28 6 1.9915 -3.4237 -3.3612 29 6 2.7024 -3.1097 -2.0410 30 1 -0.3634 0.0930 1.0234 31 1 -0.3633 0.8398 -0.5923 32 1 -0.3633 -0.9329 -0.4312 33 1 1.6966 2.1346 -0.0004 34 1 4.1558 2.0764 -0.0110 35 1 4.1872 -2.0725 -0.0001 36 1 0.4639 -4.7967 -0.0554 37 1 1.9740 -5.5040 -0.6848 38 1 0.1345 -6.0851 -2.1963 39 1 -0.3359 -4.3731 -2.3308 40 1 2.3498 -5.5414 -3.1917 41 1 1.8566 -4.0636 -6.2331 42 1 2.8214 -5.4120 -5.5436 43 1 1.9764 -6.4201 -7.5663 44 1 0.4094 -5.5647 -7.4325 45 1 1.4473 -8.1005 -9.5770 46 1 0.9851 -7.2589 -3.9980 47 1 -0.6606 -6.7780 -4.4923 48 1 2.6861 -3.2867 -4.1900 49 1 1.1406 -2.7537 -3.4845 50 1 3.6045 -3.7159 -1.9587 51 1 2.9660 -2.0525 -2.0104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039122015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:44 Heat of formation + Delta-G solvation = 17.514749 kcal Electronic energy + Delta-G solvation = -30348.492777 eV Core-core repulsion = 26440.861546 eV Total energy + Delta-G solvation = -3907.631232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25414 -39.75393 -38.38888 -36.66914 -34.29257 -33.87465 -32.39477 -31.58531 -30.98074 -29.19868 -28.43689 -27.65537 -25.56799 -24.73002 -23.48081 -23.40635 -22.51909 -21.13264 -20.01221 -19.50276 -19.34889 -17.83754 -17.03484 -16.84442 -16.73523 -16.36093 -15.27251 -15.05394 -14.85392 -14.61689 -14.37629 -14.22963 -14.16918 -13.79356 -13.62769 -13.32900 -13.26920 -13.11500 -12.96895 -12.81471 -12.40879 -12.34802 -12.15126 -11.73689 -11.59634 -11.36588 -11.19887 -11.07349 -10.91774 -10.81683 -10.54252 -10.45562 -10.07730 -9.93362 -9.91088 -9.83751 -9.76851 -9.71968 -9.47020 -9.43815 -8.83019 -8.63520 -6.80454 -5.63999 -3.05239 0.40448 0.77071 2.34818 2.70280 3.33411 3.39719 3.45247 3.47730 3.91822 4.14211 4.25023 4.30363 4.49330 4.61025 4.61809 4.78382 4.80432 4.94997 5.00687 5.06562 5.15709 5.20189 5.23654 5.27488 5.38346 5.42899 5.47282 5.56684 5.59780 5.64232 5.67319 5.69570 5.81427 5.83078 5.90083 5.98665 5.99990 6.12315 6.15701 6.17994 6.37932 6.40037 6.44743 6.62556 6.66150 6.80868 7.01465 7.10510 7.46888 7.54601 7.65232 7.83993 7.87925 8.38659 9.24246 9.85526 10.51037 11.39915 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024418 B = 0.002172 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.418270 B =12886.713824 C =13328.130452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.005 3.995 3 C -0.178 4.178 4 C 0.117 3.883 5 N -0.488 5.488 6 C 0.137 3.863 7 C -0.180 4.180 8 C 0.567 3.433 9 O -0.533 6.533 10 N -0.601 5.601 11 C 0.111 3.889 12 C -0.129 4.129 13 C -0.074 4.074 14 C -0.093 4.093 15 H 0.067 0.933 16 C -0.138 4.138 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.143 3.857 28 C -0.127 4.127 29 C 0.103 3.897 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.008 0.992 45 H 0.251 0.749 46 H 0.022 0.978 47 H 0.017 0.983 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 18.759 17.311 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.003 4.003 3 C -0.198 4.198 4 C -0.039 4.039 5 N -0.197 5.197 6 C -0.022 4.022 7 C -0.185 4.185 8 C 0.354 3.646 9 O -0.410 6.410 10 N -0.333 5.333 11 C -0.011 4.011 12 C -0.167 4.167 13 C -0.093 4.093 14 C -0.112 4.112 15 H 0.085 0.915 16 C -0.177 4.177 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.209 4.209 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.017 3.983 28 C -0.165 4.165 29 C -0.019 4.019 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.035 0.965 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.072 18.489 17.573 25.832 hybrid contribution -1.080 -0.833 -0.463 1.440 sum 2.992 17.656 17.110 24.768 Atomic orbital electron populations 1.20902 0.89465 1.03676 1.03618 1.20379 0.97156 0.91457 0.91340 1.22028 0.95606 0.98602 1.03576 1.22957 0.91730 0.96463 0.92774 1.67728 1.40692 0.98248 1.13053 1.22966 0.90023 0.96727 0.92453 1.20868 0.95634 0.94234 1.07791 1.18086 0.81884 0.83201 0.81476 1.90791 1.33210 1.79180 1.37829 1.48104 1.46811 1.13373 1.25045 1.21729 0.98186 0.81881 0.99258 1.21995 0.98500 1.02835 0.93394 1.21142 0.98010 0.95588 0.94529 1.22167 0.98128 0.97412 0.93531 0.91486 1.23074 0.98046 0.99448 0.97137 1.21944 0.97519 0.85824 0.92030 1.44524 1.74934 1.07574 1.06096 1.19130 1.35518 0.85482 0.94689 0.90527 1.24790 1.01796 0.98065 0.96223 1.69822 1.50273 1.31578 1.05514 0.86012 0.77361 0.83709 0.78524 1.20547 1.21803 1.21757 1.21304 0.96733 0.91496 0.88808 1.21967 1.00869 0.97522 0.96173 1.21937 0.92524 1.01395 0.86072 0.89608 0.90648 0.90715 0.84059 0.82208 0.82245 0.88974 0.91073 0.89990 0.91636 0.90788 0.92680 0.92270 0.87793 0.97359 0.93856 0.96022 0.96542 0.90033 0.91670 0.90762 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.37 36.01 0.34 -0.64 16 2 C 0.01 0.05 5.95 -103.91 -0.62 -0.57 16 3 C -0.18 -1.24 9.82 -39.50 -0.39 -1.63 16 4 C 0.12 0.86 11.17 -17.47 -0.20 0.66 16 5 N -0.49 -4.66 10.35 -12.91 -0.13 -4.79 16 6 C 0.14 1.28 8.97 -17.13 -0.15 1.12 16 7 C -0.18 -1.83 4.61 -104.82 -0.48 -2.31 16 8 C 0.57 6.70 6.17 -12.33 -0.08 6.62 16 9 O -0.53 -7.88 15.50 5.32 0.08 -7.80 16 10 N -0.60 -6.34 2.97 -173.89 -0.52 -6.86 16 11 C 0.11 1.19 6.44 -3.71 -0.02 1.17 16 12 C -0.13 -1.50 5.20 -26.62 -0.14 -1.64 16 13 C -0.07 -0.92 1.53 -90.58 -0.14 -1.06 16 14 C -0.09 -1.52 2.48 -88.78 -0.22 -1.74 16 15 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.14 -2.50 5.50 -24.47 -0.13 -2.63 16 17 C 0.15 3.67 5.89 -2.41 -0.01 3.65 16 18 N -0.61 -15.52 3.40 -169.93 -0.58 -16.10 16 19 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 20 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 21 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 22 N -0.92 -27.03 10.09 55.49 0.56 -26.47 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.14 2.91 5.89 -3.06 -0.02 2.89 16 28 C -0.13 -1.34 5.19 -26.61 -0.14 -1.48 16 29 C 0.10 0.94 5.59 -3.72 -0.02 0.92 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 32 H 0.07 0.74 6.71 -51.93 -0.35 0.39 16 33 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.16 1.25 7.76 -52.48 -0.41 0.84 16 36 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.99 7.27 -51.93 -0.38 0.61 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 43 H 0.10 2.84 5.87 -51.93 -0.31 2.53 16 44 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.44 7.67 -51.93 -0.40 0.04 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.08 0.85 7.27 -51.92 -0.38 0.47 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.08 0.69 5.39 -51.93 -0.28 0.41 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -33.00 393.43 -10.67 -43.67 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.31 Total: -1.25 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.67 Total: -3.46 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.67 Total: -54.22 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.08 Total: -7.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.00 -10.67 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039122015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.182 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds