Wall clock time and date at job start Wed Apr 1 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38406 * 120.85408 * 2 1 4 4 C 1.38305 * 119.30053 * 180.29812 * 3 2 1 5 5 N 1.31949 * 121.08507 * 359.68139 * 4 3 2 6 6 C 1.31667 * 121.87963 * 0.02562 * 5 4 3 7 7 C 1.39565 * 120.56509 * 0.02562 * 6 5 4 8 8 C 1.47843 * 120.55962 * 180.02562 * 7 6 5 9 9 O 1.21547 * 120.00034 * 126.04371 * 8 7 6 10 10 N 1.34776 * 119.99653 * 306.04149 * 8 7 6 11 11 C 1.46926 * 120.62789 * 174.24581 * 10 8 7 12 12 C 1.53189 * 108.77615 * 126.36732 * 11 10 8 13 13 C 1.53040 * 109.30953 * 54.63915 * 12 11 10 14 14 C 1.53002 * 109.45805 * 178.62921 * 13 12 11 15 15 H 1.09003 * 110.89302 * 60.72771 * 14 13 12 16 16 C 1.55153 * 111.00596 * 296.84158 * 14 13 12 17 17 C 1.54370 * 102.92658 * 206.45805 * 16 14 13 18 18 N 1.47027 * 107.28383 * 22.13440 * 17 16 14 19 19 C 1.36932 * 125.64328 * 181.05703 * 18 17 16 20 20 H 1.07999 * 119.99707 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00395 * 0.04674 * 19 18 17 22 22 N 1.31624 * 119.99803 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00291 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46899 * 89.99889 * 23 21 19 25 25 H 1.48494 * 109.47192 * 209.99893 * 23 21 19 26 26 H 1.48502 * 109.46818 * 330.00164 * 23 21 19 27 27 C 1.47426 * 108.70322 * 1.10022 * 18 17 16 28 28 C 1.53042 * 109.53682 * 298.63112 * 13 12 11 29 29 C 1.46921 * 120.63411 * 354.22228 * 10 8 7 30 30 H 1.09000 * 109.46916 * 275.18661 * 1 2 3 31 31 H 1.09000 * 109.47313 * 35.18596 * 1 2 3 32 32 H 1.09003 * 109.47071 * 155.18873 * 1 2 3 33 33 H 1.07998 * 120.34892 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.45539 * 179.70199 * 4 3 2 35 35 H 1.07998 * 119.72023 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.58619 * 6.57788 * 11 10 8 37 37 H 1.08997 * 109.58794 * 246.15747 * 11 10 8 38 38 H 1.09000 * 109.49906 * 294.68789 * 12 11 10 39 39 H 1.08997 * 109.52393 * 174.60135 * 12 11 10 40 40 H 1.08996 * 109.46380 * 58.65449 * 13 12 11 41 41 H 1.09007 * 110.72032 * 324.79353 * 16 14 13 42 42 H 1.09000 * 110.71817 * 88.06085 * 16 14 13 43 43 H 1.08996 * 109.84079 * 262.73400 * 17 16 14 44 44 H 1.08996 * 110.03120 * 141.64562 * 17 16 14 45 45 H 0.96998 * 119.99723 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.35893 * 217.03058 * 27 18 17 47 47 H 1.08993 * 110.36817 * 94.70879 * 27 18 17 48 48 H 1.09004 * 109.49912 * 181.32253 * 28 13 12 49 49 H 1.09004 * 109.49825 * 301.41667 * 28 13 12 50 50 H 1.09002 * 109.58418 * 353.42044 * 29 10 8 51 51 H 1.09000 * 109.58432 * 113.70131 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1882 0.0000 4 6 3.5994 1.1507 -0.0063 5 7 4.2498 0.0026 -0.0060 6 6 3.6198 -1.1535 -0.0002 7 6 2.2250 -1.2016 0.0053 8 6 1.5177 -2.4999 0.0123 9 8 0.6863 -2.7344 0.8674 10 7 1.7948 -3.4233 -0.9295 11 6 1.1948 -4.7628 -0.8638 12 6 0.5006 -5.0581 -2.1971 13 6 1.5009 -4.8728 -3.3404 14 6 0.8203 -5.2000 -4.6711 15 1 -0.0257 -4.5360 -4.8486 16 6 0.3800 -6.6870 -4.7198 17 6 0.3807 -6.9980 -6.2319 18 7 1.2657 -6.0183 -6.8789 19 6 1.5222 -5.9393 -8.2217 20 1 2.1908 -5.1802 -8.6000 21 6 0.9226 -6.8347 -9.0968 22 7 0.1078 -7.7599 -8.6357 23 14 1.2719 -6.7265 -10.9286 24 1 2.4462 -7.5733 -11.2594 25 1 0.0880 -7.2037 -11.6874 26 1 1.5595 -5.3165 -11.2952 27 6 1.8319 -5.1358 -5.8426 28 6 1.9911 -3.4232 -3.3617 29 6 2.7021 -3.1094 -2.0416 30 1 -0.3633 0.0929 1.0235 31 1 -0.3634 0.8399 -0.5922 32 1 -0.3633 -0.9328 -0.4313 33 1 1.6966 2.1346 -0.0004 34 1 4.1558 2.0764 -0.0112 35 1 4.1871 -2.0725 -0.0006 36 1 0.4638 -4.7966 -0.0559 37 1 1.9739 -5.5039 -0.6856 38 1 -0.3363 -4.3726 -2.3312 39 1 0.1338 -6.0845 -2.1974 40 1 2.3493 -5.5409 -3.1925 41 1 1.0974 -7.3189 -4.1961 42 1 -0.6191 -6.8072 -4.3011 43 1 -0.6298 -6.9040 -6.6293 44 1 0.7549 -8.0069 -6.4053 45 1 -0.3115 -8.3853 -9.2472 46 1 1.9143 -4.1154 -6.2171 47 1 2.8068 -5.5033 -5.5226 48 1 2.6856 -3.2861 -4.1906 49 1 1.1402 -2.7532 -3.4848 50 1 2.9657 -2.0522 -2.0108 51 1 3.6053 -3.7138 -1.9580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039122016.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:49 Heat of formation + Delta-G solvation = 16.334663 kcal Electronic energy + Delta-G solvation = -30350.014576 eV Core-core repulsion = 26442.332171 eV Total energy + Delta-G solvation = -3907.682404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24961 -39.74774 -38.37921 -36.68475 -34.28243 -33.87414 -32.35371 -31.62208 -30.97746 -29.21567 -28.35178 -27.71337 -25.65270 -24.55062 -23.68010 -23.31793 -22.50089 -21.14684 -19.88872 -19.57716 -19.41920 -17.82940 -17.03722 -16.81638 -16.72186 -16.36682 -15.27428 -14.98338 -14.84279 -14.59014 -14.37345 -14.23106 -14.21114 -13.81879 -13.66994 -13.34786 -13.23880 -13.10451 -12.83997 -12.74424 -12.52041 -12.22858 -12.14457 -12.01108 -11.74278 -11.39105 -11.10070 -11.01663 -10.85721 -10.73163 -10.58198 -10.46620 -10.09451 -9.92063 -9.87842 -9.80939 -9.76396 -9.73353 -9.57925 -9.45742 -8.83467 -8.57941 -6.79833 -5.69190 -3.02277 0.41341 0.78112 2.34634 2.70052 3.34401 3.40347 3.45158 3.47230 3.92497 4.14721 4.25966 4.31342 4.50612 4.61298 4.62326 4.77985 4.80211 4.94821 5.00754 5.07495 5.13969 5.20945 5.24693 5.27795 5.37880 5.43788 5.49139 5.50096 5.63068 5.65731 5.68926 5.70281 5.81130 5.85109 5.86700 5.93602 6.01135 6.14761 6.15998 6.18876 6.33581 6.38323 6.45242 6.58151 6.61730 6.78080 7.01225 7.09862 7.47858 7.58752 7.67067 7.83652 7.85610 8.29185 9.24786 9.85574 10.52272 11.42518 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.002294 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.973519 B =12200.367245 C =12975.981142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.005 3.995 3 C -0.178 4.178 4 C 0.117 3.883 5 N -0.488 5.488 6 C 0.137 3.863 7 C -0.181 4.181 8 C 0.567 3.433 9 O -0.533 6.533 10 N -0.601 5.601 11 C 0.111 3.889 12 C -0.127 4.127 13 C -0.074 4.074 14 C -0.096 4.096 15 H 0.071 0.929 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.143 3.857 28 C -0.129 4.129 29 C 0.103 3.897 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.034 0.966 47 H 0.016 0.984 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 15.055 19.976 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.003 4.003 3 C -0.198 4.198 4 C -0.039 4.039 5 N -0.197 5.197 6 C -0.022 4.022 7 C -0.186 4.186 8 C 0.354 3.646 9 O -0.410 6.410 10 N -0.334 5.334 11 C -0.011 4.011 12 C -0.165 4.165 13 C -0.093 4.093 14 C -0.115 4.115 15 H 0.089 0.911 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.017 3.983 28 C -0.167 4.167 29 C -0.019 4.019 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.034 0.966 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.284 14.813 20.210 25.421 hybrid contribution -0.679 -0.015 -1.132 1.321 sum 3.605 14.798 19.078 24.412 Atomic orbital electron populations 1.20903 0.89463 1.03697 1.03601 1.20381 0.97159 0.91459 0.91316 1.22031 0.95609 0.98610 1.03551 1.22952 0.91733 0.96465 0.92749 1.67725 1.40691 0.98248 1.13052 1.22964 0.90013 0.96724 0.92464 1.20863 0.95636 0.94225 1.07845 1.18083 0.81858 0.83202 0.81452 1.90787 1.33225 1.79182 1.37853 1.48099 1.46846 1.13348 1.25058 1.21723 0.98142 0.81952 0.99243 1.21967 0.98531 1.02695 0.93346 1.21103 0.97917 0.95649 0.94588 1.22348 0.98597 0.97311 0.93294 0.91094 1.22905 0.99590 0.95012 1.00121 1.21136 0.95098 0.92997 0.85565 1.44494 1.52467 1.34276 1.02110 1.19056 1.22785 1.12685 0.80993 0.90562 1.24805 0.99575 0.98116 0.98112 1.69977 1.33801 1.20300 1.32960 0.86132 0.77197 0.77479 0.85045 1.21636 1.21707 1.20728 1.21552 0.94051 0.94053 0.88693 1.21984 1.00985 0.97555 0.96172 1.21942 0.92469 1.01456 0.86051 0.89619 0.90628 0.90716 0.84051 0.82206 0.82254 0.89003 0.91138 0.91615 0.90126 0.90904 0.92633 0.92494 0.93873 0.94172 0.93828 0.94754 0.96615 0.89945 0.91562 0.90093 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.37 36.01 0.34 -0.65 16 2 C 0.01 0.05 5.95 -103.91 -0.62 -0.57 16 3 C -0.18 -1.27 9.82 -39.50 -0.39 -1.66 16 4 C 0.12 0.88 11.17 -17.48 -0.20 0.68 16 5 N -0.49 -4.71 10.35 -12.91 -0.13 -4.84 16 6 C 0.14 1.28 8.97 -17.13 -0.15 1.13 16 7 C -0.18 -1.84 4.61 -104.82 -0.48 -2.32 16 8 C 0.57 6.66 6.17 -12.33 -0.08 6.58 16 9 O -0.53 -7.81 15.50 5.32 0.08 -7.73 16 10 N -0.60 -6.25 2.97 -173.89 -0.52 -6.76 16 11 C 0.11 1.14 6.44 -3.71 -0.02 1.12 16 12 C -0.13 -1.40 5.20 -26.61 -0.14 -1.54 16 13 C -0.07 -0.89 1.65 -90.58 -0.15 -1.04 16 14 C -0.10 -1.56 2.56 -88.47 -0.23 -1.79 16 15 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.14 -2.47 5.43 -24.87 -0.13 -2.61 16 17 C 0.18 4.29 5.38 -3.04 -0.02 4.27 16 18 N -0.61 -15.51 3.39 -170.04 -0.58 -16.08 16 19 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.35 10.31 55.49 0.57 -26.78 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.14 2.84 5.80 -2.53 -0.01 2.83 16 28 C -0.13 -1.39 5.21 -26.61 -0.14 -1.53 16 29 C 0.10 0.94 5.59 -3.72 -0.02 0.92 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.07 0.75 6.71 -51.93 -0.35 0.40 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.16 0.73 8.06 -52.48 -0.42 0.30 16 35 H 0.16 1.25 7.76 -52.49 -0.41 0.84 16 36 H 0.09 1.02 7.00 -51.93 -0.36 0.66 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.87 7.32 -51.93 -0.38 0.49 16 40 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 41 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 42 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 43 H 0.04 1.17 7.38 -51.93 -0.38 0.78 16 44 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.03 0.67 8.02 -51.93 -0.42 0.25 16 47 H 0.02 0.32 8.03 -51.93 -0.42 -0.10 16 48 H 0.08 0.91 7.32 -51.93 -0.38 0.53 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.71 5.39 -51.93 -0.28 0.43 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -33.36 394.40 -10.72 -44.08 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.38 Total: -1.94 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.69 Total: -3.07 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.66 Total: -54.47 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.36 -10.72 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039122016.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.415 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds