Wall clock time and date at job start Wed Apr 1 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38638 * 120.46997 * 2 1 4 4 C 1.38578 * 118.48895 * 179.97438 * 3 2 1 5 5 C 1.38603 * 119.35354 * 0.02562 * 4 3 2 6 6 N 1.31505 * 120.90066 * 359.73755 * 5 4 3 7 7 C 1.32739 * 121.63922 * 0.52972 * 6 5 4 8 8 C 1.48167 * 119.72267 * 179.75163 * 7 6 5 9 9 O 1.21520 * 119.99846 * 104.08392 * 8 7 6 10 10 N 1.34777 * 119.99842 * 284.08430 * 8 7 6 11 11 C 1.46931 * 120.62709 * 174.92942 * 10 8 7 12 12 C 1.53192 * 108.77537 * 126.39593 * 11 10 8 13 13 C 1.53041 * 109.31520 * 54.62923 * 12 11 10 14 14 C 1.52993 * 109.45801 * 178.61596 * 13 12 11 15 15 H 1.08998 * 110.88603 * 59.30091 * 14 13 12 16 16 C 1.55162 * 111.00418 * 183.18071 * 14 13 12 17 17 C 1.54319 * 102.94475 * 153.57493 * 16 14 13 18 18 N 1.47025 * 107.27228 * 337.81005 * 17 16 14 19 19 C 1.36934 * 125.64793 * 178.89943 * 18 17 16 20 20 H 1.08009 * 119.99932 * 180.02562 * 19 18 17 21 21 C 1.38804 * 120.00273 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99914 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00206 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47034 * 60.00135 * 23 21 19 25 25 H 1.48499 * 109.47553 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47097 * 300.00160 * 23 21 19 27 27 C 1.47473 * 108.72135 * 358.97256 * 18 17 16 28 28 C 1.53042 * 109.53661 * 298.63992 * 13 12 11 29 29 C 1.46920 * 120.63115 * 354.93008 * 10 8 7 30 30 H 1.09003 * 109.46943 * 274.86035 * 1 2 3 31 31 H 1.08992 * 109.47336 * 34.86403 * 1 2 3 32 32 H 1.09003 * 109.46701 * 154.87005 * 1 2 3 33 33 H 1.07994 * 120.75237 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.32317 * 180.02562 * 4 3 2 35 35 H 1.07998 * 119.55109 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.58896 * 6.60079 * 11 10 8 37 37 H 1.09005 * 109.58411 * 246.17748 * 11 10 8 38 38 H 1.08999 * 109.49322 * 294.68091 * 12 11 10 39 39 H 1.09001 * 109.49586 * 174.58269 * 12 11 10 40 40 H 1.09007 * 109.45481 * 58.65722 * 13 12 11 41 41 H 1.09001 * 110.72084 * 271.94094 * 16 14 13 42 42 H 1.09006 * 110.71787 * 35.21661 * 16 14 13 43 43 H 1.08999 * 109.88179 * 97.22677 * 17 16 14 44 44 H 1.09000 * 109.88491 * 218.39503 * 17 16 14 45 45 H 0.97005 * 119.99690 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.34620 * 265.25457 * 27 18 17 47 47 H 1.08996 * 110.40053 * 142.91821 * 27 18 17 48 48 H 1.09004 * 109.49236 * 181.31820 * 28 13 12 49 49 H 1.09001 * 109.49697 * 301.37429 * 28 13 12 50 50 H 1.09004 * 109.58639 * 113.82550 * 29 10 8 51 51 H 1.08995 * 109.70546 * 353.46335 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 0.0005 5 6 4.2322 -0.0838 0.0005 6 7 3.5407 -1.2024 0.0052 7 6 2.2133 -1.2004 -0.0004 8 6 1.4768 -2.4860 -0.0004 9 8 0.9482 -2.8834 1.0191 10 7 1.3930 -3.2146 -1.1311 11 6 0.7627 -4.5418 -1.1214 12 6 -0.3254 -4.5788 -2.1991 13 6 0.2825 -4.1815 -3.5462 14 6 -0.7937 -4.2507 -4.6313 15 1 -1.6233 -3.5830 -4.3990 16 6 -0.1971 -3.9313 -6.0276 17 6 -1.1440 -4.6812 -6.9880 18 7 -1.8006 -5.7438 -6.2123 19 6 -2.7332 -6.6232 -6.6938 20 1 -3.1584 -7.3708 -6.0405 21 6 -3.1321 -6.5540 -8.0215 22 7 -2.6136 -5.6433 -8.8178 23 14 -4.4039 -7.7542 -8.6785 24 1 -5.6687 -7.6020 -7.9154 25 1 -4.6557 -7.4719 -10.1145 26 1 -3.8987 -9.1425 -8.5276 27 6 -1.2899 -5.7047 -4.8294 28 6 0.8289 -2.7545 -3.4601 29 6 1.9302 -2.6969 -2.3968 30 1 -0.3633 0.0871 1.0240 31 1 -0.3633 0.8431 -0.5874 32 1 -0.3633 -0.9304 -0.4364 33 1 1.6901 2.1415 0.0004 34 1 4.1721 2.0598 0.0010 35 1 5.3114 -0.1249 0.0005 36 1 0.3161 -4.7272 -0.1446 37 1 1.5127 -5.3040 -1.3332 38 1 -1.1198 -3.8795 -1.9381 39 1 -0.7352 -5.5865 -2.2679 40 1 1.0933 -4.8664 -3.7948 41 1 -0.2214 -2.8589 -6.2213 42 1 0.8195 -4.3161 -6.1098 43 1 -1.8924 -3.9939 -7.3824 44 1 -0.5719 -5.1190 -7.8060 45 1 -2.8927 -5.5947 -9.7456 46 1 -0.4647 -6.4067 -4.7102 47 1 -2.0881 -5.9327 -4.1231 48 1 1.2407 -2.4638 -4.4266 49 1 0.0236 -2.0724 -3.1879 50 1 2.7753 -3.3087 -2.7126 51 1 2.2556 -1.6652 -2.2633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039124725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:20 Heat of formation + Delta-G solvation = 17.015202 kcal Electronic energy + Delta-G solvation = -30404.349597 eV Core-core repulsion = 26496.696703 eV Total energy + Delta-G solvation = -3907.652894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.21652 -39.71270 -38.32084 -36.62592 -34.06811 -33.78157 -32.61592 -31.67396 -31.19937 -29.16435 -28.11917 -27.56765 -25.58351 -24.81991 -23.49275 -23.21133 -22.59809 -21.19151 -19.88259 -19.64458 -19.46548 -17.90864 -17.17025 -16.78927 -16.62725 -15.96135 -15.16094 -14.98608 -14.88475 -14.57704 -14.37201 -14.19239 -14.07956 -13.79337 -13.57331 -13.52510 -13.15315 -13.06495 -12.88777 -12.78948 -12.41549 -12.20869 -12.15358 -11.99706 -11.72265 -11.33718 -11.05049 -11.02222 -10.84422 -10.70117 -10.55893 -10.44781 -10.22082 -10.10672 -9.86864 -9.79765 -9.75821 -9.68273 -9.56698 -9.30378 -8.78783 -8.56363 -6.78229 -5.67624 -3.00553 0.48290 0.80379 2.25111 2.67738 3.28049 3.42269 3.46345 3.47599 3.86903 4.21450 4.34210 4.51434 4.51667 4.53682 4.65266 4.79451 4.82245 4.92351 5.00358 5.08999 5.19781 5.21597 5.24349 5.30596 5.43057 5.51160 5.58688 5.60094 5.62111 5.68149 5.69293 5.71630 5.75596 5.83922 5.92039 5.99670 6.01908 6.13659 6.17308 6.20331 6.35344 6.42321 6.47945 6.59547 6.63879 6.79995 7.03436 7.13146 7.42701 7.59797 7.68016 7.85532 7.86400 8.30665 9.26451 9.87186 10.53947 11.44080 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.002198 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.436740 B =12738.096024 C =13111.671140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C -0.077 4.077 4 C -0.156 4.156 5 C 0.094 3.906 6 N -0.454 5.454 7 C 0.096 3.904 8 C 0.581 3.419 9 O -0.530 6.530 10 N -0.594 5.594 11 C 0.111 3.889 12 C -0.129 4.129 13 C -0.074 4.074 14 C -0.096 4.096 15 H 0.071 0.929 16 C -0.138 4.138 17 C 0.178 3.822 18 N -0.607 5.607 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.142 3.858 28 C -0.128 4.128 29 C 0.113 3.887 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.252 0.748 46 H 0.017 0.983 47 H 0.035 0.965 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.073 0.927 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.182 15.416 17.080 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.101 4.101 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.064 4.064 6 N -0.164 5.164 7 C -0.044 4.044 8 C 0.366 3.634 9 O -0.406 6.406 10 N -0.327 5.327 11 C -0.011 4.011 12 C -0.167 4.167 13 C -0.093 4.093 14 C -0.115 4.115 15 H 0.089 0.911 16 C -0.176 4.176 17 C 0.053 3.947 18 N -0.334 5.334 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.016 3.984 28 C -0.166 4.166 29 C -0.010 4.010 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.054 0.946 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.205 14.310 17.407 26.118 hybrid contribution -0.929 0.329 -0.539 1.123 sum 12.276 14.639 16.868 25.486 Atomic orbital electron populations 1.20828 0.89496 1.03632 1.03419 1.20852 0.97888 0.92657 0.98713 1.21491 0.94197 0.97971 0.96638 1.22332 0.95234 0.99860 1.00183 1.22828 1.00487 0.87265 0.95868 1.67650 1.06468 1.31794 1.10530 1.20905 0.90408 0.93316 0.99727 1.17890 0.79317 0.82658 0.83486 1.90799 1.47078 1.70321 1.32382 1.48035 1.57932 1.18352 1.08372 1.21756 0.95755 0.82407 1.01143 1.21997 0.97556 1.03059 0.94075 1.21105 0.98064 0.95744 0.94366 1.22344 0.96647 0.98771 0.93748 0.91061 1.22903 0.99394 0.99565 0.95780 1.21120 0.92802 0.89475 0.91319 1.44499 1.47192 1.36723 1.04941 1.19020 1.14039 1.08572 0.93871 0.90596 1.24796 1.00340 0.99131 0.96345 1.69966 1.45869 1.35774 1.05516 0.86210 0.81250 0.80507 0.77864 1.21216 1.21641 1.21203 1.21566 0.95825 0.92936 0.88076 1.21989 0.98027 0.98117 0.98485 1.21746 0.96681 0.99388 0.83137 0.90007 0.90474 0.91074 0.84079 0.84201 0.82031 0.88921 0.91001 0.91510 0.89913 0.90893 0.92566 0.92652 0.93868 0.94239 0.93804 0.96561 0.94646 0.90124 0.91581 0.90854 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.71 36.01 0.35 -0.63 16 2 C -0.10 -0.93 5.93 -104.09 -0.62 -1.55 16 3 C -0.08 -0.53 9.87 -39.31 -0.39 -0.92 16 4 C -0.16 -0.95 10.11 -39.32 -0.40 -1.35 16 5 C 0.09 0.74 11.18 -17.56 -0.20 0.54 16 6 N -0.45 -5.09 10.27 -9.80 -0.10 -5.19 16 7 C 0.10 1.12 4.48 -83.01 -0.37 0.75 16 8 C 0.58 7.82 5.71 -12.18 -0.07 7.75 16 9 O -0.53 -8.70 16.52 5.35 0.09 -8.61 16 10 N -0.59 -7.05 2.97 -173.76 -0.52 -7.57 16 11 C 0.11 1.27 6.44 -3.71 -0.02 1.25 16 12 C -0.13 -1.52 5.21 -26.61 -0.14 -1.66 16 13 C -0.07 -0.93 1.65 -90.58 -0.15 -1.08 16 14 C -0.10 -1.57 2.56 -88.47 -0.23 -1.79 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.14 -2.47 5.42 -24.90 -0.13 -2.61 16 17 C 0.18 4.31 5.37 -3.06 -0.02 4.30 16 18 N -0.61 -15.61 3.40 -170.04 -0.58 -16.18 16 19 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 20 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 27 C 0.14 2.87 5.80 -2.50 -0.01 2.86 16 28 C -0.13 -1.38 5.20 -26.61 -0.14 -1.52 16 29 C 0.11 1.16 6.31 -3.72 -0.02 1.14 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 33 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.99 7.32 -51.93 -0.38 0.61 16 40 H 0.07 0.94 8.13 -51.92 -0.42 0.51 16 41 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 42 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 43 H 0.04 1.17 7.38 -51.93 -0.38 0.78 16 44 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.02 0.33 8.03 -51.93 -0.42 -0.08 16 47 H 0.04 0.71 8.02 -51.93 -0.42 0.29 16 48 H 0.08 0.84 7.32 -51.93 -0.38 0.46 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -34.12 398.48 -10.81 -44.94 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.45 Total: -2.39 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.81 Total: -1.44 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.62 Total: -55.79 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.12 -10.81 -44.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039124725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.952 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds