Wall clock time and date at job start Wed Apr 1 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38638 * 120.46997 * 2 1 4 4 C 1.38578 * 118.48895 * 179.97438 * 3 2 1 5 5 C 1.38603 * 119.35354 * 0.02562 * 4 3 2 6 6 N 1.31505 * 120.90066 * 359.73755 * 5 4 3 7 7 C 1.32739 * 121.63922 * 0.52972 * 6 5 4 8 8 C 1.48167 * 119.72267 * 179.75163 * 7 6 5 9 9 O 1.21520 * 119.99846 * 104.08392 * 8 7 6 10 10 N 1.34777 * 119.99842 * 284.08430 * 8 7 6 11 11 C 1.46931 * 120.62709 * 174.92942 * 10 8 7 12 12 C 1.53192 * 108.77537 * 126.39593 * 11 10 8 13 13 C 1.53041 * 109.31520 * 54.62923 * 12 11 10 14 14 C 1.52993 * 109.45801 * 178.61596 * 13 12 11 15 15 H 1.08998 * 110.88603 * 59.30091 * 14 13 12 16 16 C 1.55162 * 111.00418 * 183.18071 * 14 13 12 17 17 C 1.54319 * 102.94475 * 153.57493 * 16 14 13 18 18 N 1.47025 * 107.27228 * 337.81005 * 17 16 14 19 19 C 1.36934 * 125.64793 * 178.89943 * 18 17 16 20 20 H 1.08009 * 119.99932 * 180.02562 * 19 18 17 21 21 C 1.38804 * 120.00273 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99914 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00206 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47034 * 60.00135 * 23 21 19 25 25 H 1.48499 * 109.47553 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47097 * 300.00160 * 23 21 19 27 27 C 1.47473 * 108.72135 * 358.97256 * 18 17 16 28 28 C 1.53042 * 109.53661 * 298.63992 * 13 12 11 29 29 C 1.46920 * 120.63115 * 354.93008 * 10 8 7 30 30 H 1.09003 * 109.46943 * 274.86035 * 1 2 3 31 31 H 1.08992 * 109.47336 * 34.86403 * 1 2 3 32 32 H 1.09003 * 109.46701 * 154.87005 * 1 2 3 33 33 H 1.07994 * 120.75237 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.32317 * 180.02562 * 4 3 2 35 35 H 1.07998 * 119.55109 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.58896 * 6.60079 * 11 10 8 37 37 H 1.09005 * 109.58411 * 246.17748 * 11 10 8 38 38 H 1.08999 * 109.49322 * 294.68091 * 12 11 10 39 39 H 1.09001 * 109.49586 * 174.58269 * 12 11 10 40 40 H 1.09007 * 109.45481 * 58.65722 * 13 12 11 41 41 H 1.09001 * 110.72084 * 271.94094 * 16 14 13 42 42 H 1.09006 * 110.71787 * 35.21661 * 16 14 13 43 43 H 1.08999 * 109.88179 * 97.22677 * 17 16 14 44 44 H 1.09000 * 109.88491 * 218.39503 * 17 16 14 45 45 H 0.97005 * 119.99690 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.34620 * 265.25457 * 27 18 17 47 47 H 1.08996 * 110.40053 * 142.91821 * 27 18 17 48 48 H 1.09004 * 109.49236 * 181.31820 * 28 13 12 49 49 H 1.09001 * 109.49697 * 301.37429 * 28 13 12 50 50 H 1.09004 * 109.58639 * 113.82550 * 29 10 8 51 51 H 1.08995 * 109.70546 * 353.46335 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 0.0005 5 6 4.2322 -0.0838 0.0005 6 7 3.5407 -1.2024 0.0052 7 6 2.2133 -1.2004 -0.0004 8 6 1.4768 -2.4860 -0.0004 9 8 0.9482 -2.8834 1.0191 10 7 1.3930 -3.2146 -1.1311 11 6 0.7627 -4.5418 -1.1214 12 6 -0.3254 -4.5788 -2.1991 13 6 0.2825 -4.1815 -3.5462 14 6 -0.7937 -4.2507 -4.6313 15 1 -1.6233 -3.5830 -4.3990 16 6 -0.1971 -3.9313 -6.0276 17 6 -1.1440 -4.6812 -6.9880 18 7 -1.8006 -5.7438 -6.2123 19 6 -2.7332 -6.6232 -6.6938 20 1 -3.1584 -7.3708 -6.0405 21 6 -3.1321 -6.5540 -8.0215 22 7 -2.6136 -5.6433 -8.8178 23 14 -4.4039 -7.7542 -8.6785 24 1 -5.6687 -7.6020 -7.9154 25 1 -4.6557 -7.4719 -10.1145 26 1 -3.8987 -9.1425 -8.5276 27 6 -1.2899 -5.7047 -4.8294 28 6 0.8289 -2.7545 -3.4601 29 6 1.9302 -2.6969 -2.3968 30 1 -0.3633 0.0871 1.0240 31 1 -0.3633 0.8431 -0.5874 32 1 -0.3633 -0.9304 -0.4364 33 1 1.6901 2.1415 0.0004 34 1 4.1721 2.0598 0.0010 35 1 5.3114 -0.1249 0.0005 36 1 0.3161 -4.7272 -0.1446 37 1 1.5127 -5.3040 -1.3332 38 1 -1.1198 -3.8795 -1.9381 39 1 -0.7352 -5.5865 -2.2679 40 1 1.0933 -4.8664 -3.7948 41 1 -0.2214 -2.8589 -6.2213 42 1 0.8195 -4.3161 -6.1098 43 1 -1.8924 -3.9939 -7.3824 44 1 -0.5719 -5.1190 -7.8060 45 1 -2.8927 -5.5947 -9.7456 46 1 -0.4647 -6.4067 -4.7102 47 1 -2.0881 -5.9327 -4.1231 48 1 1.2407 -2.4638 -4.4266 49 1 0.0236 -2.0724 -3.1879 50 1 2.7753 -3.3087 -2.7126 51 1 2.2556 -1.6652 -2.2633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039124725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:19 Heat of formation + Delta-G solvation = -3.352915 kcal Electronic energy + Delta-G solvation = -30405.232825 eV Core-core repulsion = 26496.696703 eV Total energy + Delta-G solvation = -3908.536122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99248 -40.58899 -39.59111 -37.98236 -35.25946 -34.67768 -33.70098 -32.99604 -32.09229 -30.91245 -29.39606 -28.43714 -26.99270 -26.02460 -24.74285 -24.15867 -23.22993 -22.20262 -21.72283 -20.91548 -20.44973 -18.86290 -18.71693 -17.84183 -17.52959 -16.79795 -16.54188 -16.28069 -15.95485 -15.74133 -15.57243 -15.28101 -15.07601 -14.91967 -14.48938 -14.29791 -14.16357 -14.01409 -13.84350 -13.82482 -13.75283 -13.50494 -13.39833 -13.25658 -12.90405 -12.75284 -12.69850 -12.32903 -12.26483 -12.17637 -12.03302 -11.80517 -11.65140 -11.40745 -11.32064 -11.08179 -11.04675 -10.77219 -10.68772 -10.47522 -9.93948 -9.75626 -8.86843 -7.83948 -5.18888 -0.12969 0.25280 1.32008 1.44628 1.48099 1.54301 1.81694 2.50100 2.67963 3.11498 3.33541 3.60060 3.62364 3.68132 3.78926 3.82374 3.91590 3.97016 4.05724 4.07724 4.20199 4.24975 4.39181 4.41749 4.43200 4.48658 4.50090 4.58177 4.62342 4.71591 4.74054 4.77520 4.83703 4.89146 4.96325 5.00838 5.03417 5.05703 5.12179 5.13832 5.16694 5.20344 5.27184 5.40670 5.45807 5.50494 5.60139 5.65949 5.73103 5.81543 6.20760 6.22376 6.79826 6.92423 7.12466 7.81089 8.45542 9.26271 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.002198 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.436740 B =12738.096024 C =13111.671140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C -0.076 4.076 4 C -0.141 4.141 5 C 0.085 3.915 6 N -0.485 5.485 7 C 0.066 3.934 8 C 0.577 3.423 9 O -0.574 6.574 10 N -0.593 5.593 11 C 0.113 3.887 12 C -0.121 4.121 13 C -0.063 4.063 14 C -0.077 4.077 15 H 0.066 0.934 16 C -0.121 4.121 17 C 0.183 3.817 18 N -0.631 5.631 19 C -0.243 4.243 20 H 0.080 0.920 21 C -0.069 4.069 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.136 3.864 28 C -0.121 4.121 29 C 0.119 3.881 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.172 0.828 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.005 0.995 44 H 0.001 0.999 45 H 0.246 0.754 46 H 0.024 0.976 47 H 0.036 0.964 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.724 17.344 17.948 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.160 4.160 5 C -0.074 4.074 6 N -0.196 5.196 7 C -0.072 4.072 8 C 0.364 3.636 9 O -0.453 6.453 10 N -0.325 5.325 11 C -0.009 4.009 12 C -0.160 4.160 13 C -0.082 4.082 14 C -0.096 4.096 15 H 0.084 0.916 16 C -0.159 4.159 17 C 0.058 3.942 18 N -0.358 5.358 19 C -0.372 4.372 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.203 1.203 27 C 0.012 3.988 28 C -0.159 4.159 29 C -0.003 4.003 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.205 0.795 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.024 0.976 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.042 0.958 47 H 0.055 0.945 48 H 0.111 0.889 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.760 16.232 18.290 28.563 hybrid contribution -1.354 -0.235 -0.774 1.577 sum 13.406 15.997 17.516 27.248 Atomic orbital electron populations 1.20817 0.89379 1.03431 1.03483 1.21024 0.98202 0.92984 0.99033 1.21897 0.94760 0.98112 0.95335 1.22762 0.95162 1.00612 0.97490 1.23388 1.01682 0.87181 0.95125 1.67576 1.06404 1.33802 1.11814 1.20690 0.90920 0.92896 1.02662 1.18329 0.78834 0.83315 0.83087 1.90755 1.49044 1.71602 1.33856 1.48144 1.57385 1.18189 1.08749 1.21715 0.95927 0.82883 1.00339 1.21904 0.97456 1.02773 0.93821 1.21000 0.96817 0.97387 0.93019 1.22195 0.97462 0.95762 0.94203 0.91559 1.22761 0.98518 1.00094 0.94552 1.20918 0.92462 0.88842 0.92013 1.44859 1.47028 1.36555 1.07335 1.19437 1.14429 1.09027 0.94280 0.90207 1.25662 1.02671 1.01125 0.96757 1.70199 1.47226 1.37425 1.05318 0.85160 0.78941 0.78532 0.76764 1.20315 1.21999 1.20303 1.21782 0.95926 0.95701 0.85429 1.21924 0.98158 0.96523 0.99263 1.21780 0.96543 1.00027 0.81991 0.90298 0.88100 0.93284 0.81018 0.80410 0.79502 0.90111 0.89742 0.92131 0.90090 0.90271 0.90208 0.90888 0.97625 0.98043 0.94490 0.95798 0.94545 0.88949 0.91671 0.89912 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.71 71.24 0.69 -1.12 16 2 C -0.11 -1.90 5.93 -19.52 -0.12 -2.02 16 3 C -0.08 -0.79 9.87 22.45 0.22 -0.56 16 4 C -0.14 -1.16 10.11 22.44 0.23 -0.93 16 5 C 0.09 1.10 11.18 84.83 0.95 2.04 16 6 N -0.49 -10.26 10.27 -184.90 -1.90 -12.16 16 7 C 0.07 1.50 4.48 41.90 0.19 1.69 16 8 C 0.58 15.71 5.71 86.88 0.50 16.20 16 9 O -0.57 -19.60 16.52 -3.78 -0.06 -19.66 16 10 N -0.59 -13.71 2.97 -821.94 -2.44 -16.16 16 11 C 0.11 2.54 6.44 86.36 0.56 3.10 16 12 C -0.12 -2.76 5.21 30.67 0.16 -2.60 16 13 C -0.06 -1.46 1.65 -10.77 -0.02 -1.48 16 14 C -0.08 -2.41 2.56 -9.40 -0.02 -2.44 16 15 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 16 C -0.12 -4.18 5.42 31.78 0.17 -4.00 16 17 C 0.18 9.11 5.37 86.73 0.47 9.57 16 18 N -0.63 -33.02 3.40 -691.87 -2.35 -35.37 16 19 C -0.24 -13.93 10.28 84.03 0.86 -13.06 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 21 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 22 N -0.95 -58.49 10.31 21.65 0.22 -58.27 16 23 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 27 C 0.14 5.46 5.80 86.85 0.50 5.96 16 28 C -0.12 -2.31 5.20 30.67 0.16 -2.15 16 29 C 0.12 2.21 6.31 86.36 0.55 2.76 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.04 8.12 -2.39 -0.02 1.02 16 32 H 0.05 0.99 6.91 -2.39 -0.02 0.97 16 33 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 34 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 35 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.08 2.04 7.00 -2.39 -0.02 2.02 16 37 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.88 7.32 -2.39 -0.02 1.86 16 40 H 0.08 1.81 8.13 -2.38 -0.02 1.79 16 41 H 0.08 2.40 8.09 -2.39 -0.02 2.38 16 42 H 0.07 2.29 8.04 -2.38 -0.02 2.27 16 43 H 0.01 0.31 7.38 -2.39 -0.02 0.29 16 44 H 0.00 0.07 7.51 -2.39 -0.02 0.06 16 45 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 46 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 47 H 0.04 1.44 8.02 -2.39 -0.02 1.42 16 48 H 0.09 1.61 7.32 -2.39 -0.02 1.59 16 49 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 51 H 0.08 1.46 6.37 -2.39 -0.02 1.45 16 Total: -1.00 -78.47 398.48 2.91 -75.56 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.91 Total: 10.06 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.51 Total: 7.37 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -6.47 Total: -121.96 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.06 Total: -19.66 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -78.47 2.91 -75.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039124725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.204 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds