Wall clock time and date at job start Wed Apr 1 2020 02:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38628 * 120.46607 * 2 1 4 4 C 1.38581 * 118.48736 * 179.72932 * 3 2 1 5 5 C 1.38600 * 119.35330 * 359.97438 * 4 3 2 6 6 N 1.31501 * 120.90153 * 359.97438 * 5 4 3 7 7 C 1.32754 * 121.63877 * 0.04602 * 6 5 4 8 8 C 1.48167 * 119.71966 * 180.02562 * 7 6 5 9 9 O 1.21516 * 119.99395 * 255.75569 * 8 7 6 10 10 N 1.34776 * 120.00416 * 75.75095 * 8 7 6 11 11 C 1.46925 * 120.62797 * 4.78482 * 10 8 7 12 12 C 1.52755 * 109.00865 * 233.58617 * 11 10 8 13 13 C 1.53042 * 109.38211 * 305.58631 * 12 11 10 14 14 C 1.53000 * 109.45060 * 181.25276 * 13 12 11 15 15 H 1.08999 * 110.88832 * 300.64293 * 14 13 12 16 16 C 1.55161 * 111.00616 * 176.75937 * 14 13 12 17 17 C 1.54371 * 102.92241 * 206.45543 * 16 14 13 18 18 N 1.47024 * 107.28842 * 22.13854 * 17 16 14 19 19 C 1.36932 * 125.65190 * 181.05376 * 18 17 16 20 20 H 1.07998 * 120.00755 * 180.02562 * 19 18 17 21 21 C 1.38822 * 119.99533 * 0.04601 * 19 18 17 22 22 N 1.31615 * 119.99863 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99733 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47258 * 89.99578 * 23 21 19 25 25 H 1.48499 * 109.46736 * 209.99811 * 23 21 19 26 26 H 1.48502 * 109.47049 * 329.99555 * 23 21 19 27 27 C 1.47426 * 108.70185 * 1.09362 * 18 17 16 28 28 C 1.53042 * 109.53461 * 61.24369 * 13 12 11 29 29 C 1.46924 * 120.62879 * 185.06885 * 10 8 7 30 30 H 1.08998 * 109.47513 * 85.22831 * 1 2 3 31 31 H 1.09000 * 109.46639 * 205.22432 * 1 2 3 32 32 H 1.08998 * 109.47381 * 325.22235 * 1 2 3 33 33 H 1.08004 * 120.75644 * 359.74778 * 3 2 1 34 34 H 1.08000 * 120.32393 * 180.02562 * 4 3 2 35 35 H 1.07997 * 119.55160 * 180.02562 * 5 4 3 36 36 H 1.09007 * 109.58898 * 353.41870 * 11 10 8 37 37 H 1.08999 * 109.58860 * 113.84271 * 11 10 8 38 38 H 1.09007 * 109.56511 * 185.55668 * 12 11 10 39 39 H 1.09003 * 109.36500 * 65.49937 * 12 11 10 40 40 H 1.08998 * 109.46179 * 301.22216 * 13 12 11 41 41 H 1.09001 * 110.71686 * 324.79265 * 16 14 13 42 42 H 1.09001 * 110.71554 * 88.06436 * 16 14 13 43 43 H 1.08994 * 109.84511 * 262.73356 * 17 16 14 44 44 H 1.08995 * 110.02895 * 141.64706 * 17 16 14 45 45 H 0.96999 * 119.99718 * 180.02562 * 22 21 19 46 46 H 1.09007 * 110.36707 * 217.02964 * 27 18 17 47 47 H 1.09004 * 110.36949 * 94.71294 * 27 18 17 48 48 H 1.09000 * 109.49908 * 178.68239 * 28 13 12 49 49 H 1.08998 * 109.50138 * 58.58382 * 28 13 12 50 50 H 1.09000 * 109.57877 * 246.15213 * 29 10 8 51 51 H 1.08990 * 109.58957 * 6.43318 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1470 0.0058 5 6 4.2322 -0.0837 0.0118 6 7 3.5407 -1.2023 0.0127 7 6 2.2132 -1.2003 0.0069 8 6 1.4767 -2.4860 0.0088 9 8 0.9545 -2.8884 -1.0120 10 7 1.3861 -3.2092 1.1425 11 6 1.9211 -2.6879 2.4076 12 6 2.8777 -3.7180 3.0054 13 6 2.1598 -5.0636 3.1331 14 6 3.1067 -6.0886 3.7605 15 1 4.0019 -6.2145 3.1516 16 6 2.3890 -7.4464 3.9817 17 6 3.1724 -8.0630 5.1602 18 7 3.8310 -6.9584 5.8727 19 6 4.6411 -7.0864 6.9693 20 1 5.0789 -6.2094 7.4226 21 6 4.9000 -8.3436 7.4979 22 7 4.3663 -9.4124 6.9455 23 14 6.0046 -8.5182 8.9942 24 1 5.1822 -8.4418 10.2282 25 1 6.7020 -9.8283 8.9444 26 1 7.0078 -7.4232 8.9993 27 6 3.4738 -5.6900 5.2117 28 6 1.7304 -5.5481 1.7463 29 6 0.7559 -4.5364 1.1354 30 1 -0.3634 0.0855 -1.0241 31 1 -0.3632 -0.9297 0.4380 32 1 -0.3634 0.8441 0.5862 33 1 1.6900 2.1415 -0.0041 34 1 4.1720 2.0599 0.0063 35 1 5.3113 -0.1248 0.0168 36 1 2.4579 -1.7575 2.2217 37 1 1.1022 -2.5067 3.1037 38 1 3.2038 -3.3848 3.9907 39 1 3.7439 -3.8282 2.3529 40 1 1.2799 -4.9472 3.7656 41 1 1.3447 -7.2909 4.2524 42 1 2.4692 -8.0740 3.0940 43 1 3.9213 -8.7593 4.7828 44 1 2.4889 -8.5822 5.8320 45 1 4.5470 -10.2908 7.3152 46 1 4.3244 -5.0082 5.2142 47 1 2.6180 -5.2317 5.7073 48 1 1.2400 -6.5175 1.8354 49 1 2.6074 -5.6411 1.1057 50 1 -0.1601 -4.5090 1.7256 51 1 0.5217 -4.8242 0.1106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039124726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:25 Heat of formation + Delta-G solvation = 17.778765 kcal Electronic energy + Delta-G solvation = -30357.403698 eV Core-core repulsion = 26449.783914 eV Total energy + Delta-G solvation = -3907.619783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21121 -39.69614 -38.31177 -36.62191 -34.06643 -33.77557 -32.58919 -31.66579 -31.19191 -29.18992 -27.99568 -27.62883 -25.71400 -24.58131 -23.66542 -23.12433 -22.59533 -21.17344 -19.85448 -19.62072 -19.41959 -17.92042 -17.15407 -16.82916 -16.58890 -15.95053 -15.09902 -14.96221 -14.90493 -14.59991 -14.38491 -14.18226 -14.07056 -13.75866 -13.57343 -13.51658 -13.18084 -13.04333 -12.89931 -12.70966 -12.48365 -12.18361 -12.16608 -11.96396 -11.70348 -11.29990 -11.05924 -10.96785 -10.82933 -10.69984 -10.52592 -10.42626 -10.20390 -10.07023 -9.82287 -9.78562 -9.73720 -9.66463 -9.54777 -9.29997 -8.78991 -8.55386 -6.76882 -5.66599 -2.99490 0.49539 0.81787 2.23307 2.70457 3.29883 3.42023 3.46727 3.48918 3.88289 4.20924 4.34097 4.52333 4.52645 4.54002 4.68707 4.81683 4.86549 4.94107 5.01567 5.09296 5.18073 5.19685 5.20287 5.33699 5.43466 5.52496 5.54931 5.57794 5.65604 5.70254 5.71541 5.72823 5.76030 5.89061 5.91739 6.00706 6.08065 6.17002 6.21775 6.23559 6.38929 6.43651 6.50742 6.62239 6.66637 6.82685 7.06040 7.13197 7.46163 7.61483 7.70489 7.85361 7.88512 8.31951 9.27464 9.88308 10.55314 11.45138 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002310 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.932424 B =12116.618909 C =13071.063285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.102 4.102 3 C -0.078 4.078 4 C -0.156 4.156 5 C 0.097 3.903 6 N -0.451 5.451 7 C 0.096 3.904 8 C 0.581 3.419 9 O -0.531 6.531 10 N -0.594 5.594 11 C 0.112 3.888 12 C -0.129 4.129 13 C -0.073 4.073 14 C -0.096 4.096 15 H 0.072 0.928 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.143 3.857 28 C -0.128 4.128 29 C 0.112 3.888 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.034 0.966 47 H 0.016 0.984 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 21.770 -14.687 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.105 4.105 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.062 4.062 6 N -0.161 5.161 7 C -0.043 4.043 8 C 0.367 3.633 9 O -0.407 6.407 10 N -0.327 5.327 11 C -0.011 4.011 12 C -0.167 4.167 13 C -0.092 4.092 14 C -0.115 4.115 15 H 0.090 0.910 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.017 3.983 28 C -0.166 4.166 29 C -0.010 4.010 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.033 0.967 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.285 20.532 -15.080 26.496 hybrid contribution 0.389 0.710 0.888 1.202 sum -6.896 21.242 -14.192 26.461 Atomic orbital electron populations 1.20804 0.89647 1.03356 1.03370 1.20823 0.97776 0.92709 0.99192 1.21468 0.94206 0.97890 0.96783 1.22342 0.95223 0.99894 1.00158 1.22869 1.00608 0.87212 0.95521 1.67689 1.06398 1.31757 1.10235 1.20912 0.90481 0.93250 0.99681 1.17898 0.79268 0.82793 0.83366 1.90794 1.47479 1.70131 1.32262 1.48051 1.57966 1.18249 1.08421 1.21691 0.97478 0.97439 0.84470 1.21896 0.98342 0.94807 1.01619 1.21096 0.98421 0.94100 0.95574 1.22345 0.97523 0.94606 0.97038 0.91004 1.22906 0.98959 0.96008 0.99764 1.21133 0.94307 0.89674 0.89666 1.44496 1.55899 1.00605 1.32349 1.19059 1.20644 0.92850 1.02898 0.90573 1.24804 1.00760 0.95495 0.99581 1.69975 1.47842 0.97428 1.41793 0.86133 0.80098 0.77028 0.82609 1.21671 1.21715 1.20741 1.21552 0.96674 0.89973 0.90131 1.21976 0.99546 0.98366 0.96690 1.21733 0.95491 0.80864 1.02874 0.90061 0.91257 0.90592 0.84148 0.84188 0.81935 0.90560 0.91091 0.90139 0.91107 0.91035 0.92663 0.92473 0.93869 0.94201 0.93845 0.94732 0.96673 0.90083 0.91428 0.91168 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.71 36.01 0.35 -0.51 16 2 C -0.10 -0.93 5.93 -104.10 -0.62 -1.55 16 3 C -0.08 -0.52 9.87 -39.31 -0.39 -0.91 16 4 C -0.16 -0.99 10.11 -39.32 -0.40 -1.39 16 5 C 0.10 0.81 11.18 -17.56 -0.20 0.62 16 6 N -0.45 -5.32 10.01 -9.80 -0.10 -5.42 16 7 C 0.10 1.13 4.59 -83.01 -0.38 0.75 16 8 C 0.58 7.82 5.71 -12.18 -0.07 7.75 16 9 O -0.53 -8.65 16.54 5.35 0.09 -8.56 16 10 N -0.59 -7.05 2.98 -174.03 -0.52 -7.57 16 11 C 0.11 1.18 6.32 -3.94 -0.02 1.15 16 12 C -0.13 -1.53 5.19 -26.84 -0.14 -1.67 16 13 C -0.07 -0.95 1.65 -90.58 -0.15 -1.10 16 14 C -0.10 -1.62 2.56 -88.47 -0.23 -1.84 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.14 -2.54 5.43 -24.87 -0.13 -2.68 16 17 C 0.18 4.36 5.38 -3.04 -0.02 4.34 16 18 N -0.61 -15.73 3.39 -170.04 -0.58 -16.31 16 19 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -27.59 10.31 55.49 0.57 -27.02 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.14 2.91 5.80 -2.53 -0.01 2.90 16 28 C -0.13 -1.53 5.20 -26.61 -0.14 -1.66 16 29 C 0.11 1.26 6.42 -3.71 -0.02 1.24 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.60 6.91 -51.93 -0.36 0.24 16 32 H 0.08 0.39 8.12 -51.93 -0.42 -0.04 16 33 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 34 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.08 0.79 6.11 -51.93 -0.32 0.48 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.96 7.32 -51.92 -0.38 0.58 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 41 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 42 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 43 H 0.04 1.18 7.38 -51.93 -0.38 0.80 16 44 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.03 0.69 8.02 -51.92 -0.42 0.28 16 47 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16 48 H 0.08 0.93 7.32 -51.93 -0.38 0.55 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.09 1.10 7.03 -51.93 -0.37 0.74 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -34.41 398.10 -10.82 -45.23 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.44 Total: -2.20 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.82 Total: -1.51 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.62 Total: -56.31 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.41 -10.82 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039124726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.007 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds