Wall clock time and date at job start Wed Apr 1 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38628 * 120.46607 * 2 1 4 4 C 1.38581 * 118.48736 * 179.72932 * 3 2 1 5 5 C 1.38600 * 119.35330 * 359.97438 * 4 3 2 6 6 N 1.31501 * 120.90153 * 359.97438 * 5 4 3 7 7 C 1.32754 * 121.63877 * 0.04602 * 6 5 4 8 8 C 1.48167 * 119.71966 * 180.02562 * 7 6 5 9 9 O 1.21516 * 119.99395 * 255.75569 * 8 7 6 10 10 N 1.34776 * 120.00416 * 75.75095 * 8 7 6 11 11 C 1.46925 * 120.62797 * 4.78482 * 10 8 7 12 12 C 1.52755 * 109.00865 * 233.58617 * 11 10 8 13 13 C 1.53042 * 109.38211 * 305.58631 * 12 11 10 14 14 C 1.53000 * 109.45060 * 181.25276 * 13 12 11 15 15 H 1.08999 * 110.88832 * 300.64293 * 14 13 12 16 16 C 1.55161 * 111.00616 * 176.75937 * 14 13 12 17 17 C 1.54371 * 102.92241 * 206.45543 * 16 14 13 18 18 N 1.47024 * 107.28842 * 22.13854 * 17 16 14 19 19 C 1.36932 * 125.65190 * 181.05376 * 18 17 16 20 20 H 1.07998 * 120.00755 * 180.02562 * 19 18 17 21 21 C 1.38822 * 119.99533 * 0.04601 * 19 18 17 22 22 N 1.31615 * 119.99863 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99733 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47258 * 89.99578 * 23 21 19 25 25 H 1.48499 * 109.46736 * 209.99811 * 23 21 19 26 26 H 1.48502 * 109.47049 * 329.99555 * 23 21 19 27 27 C 1.47426 * 108.70185 * 1.09362 * 18 17 16 28 28 C 1.53042 * 109.53461 * 61.24369 * 13 12 11 29 29 C 1.46924 * 120.62879 * 185.06885 * 10 8 7 30 30 H 1.08998 * 109.47513 * 85.22831 * 1 2 3 31 31 H 1.09000 * 109.46639 * 205.22432 * 1 2 3 32 32 H 1.08998 * 109.47381 * 325.22235 * 1 2 3 33 33 H 1.08004 * 120.75644 * 359.74778 * 3 2 1 34 34 H 1.08000 * 120.32393 * 180.02562 * 4 3 2 35 35 H 1.07997 * 119.55160 * 180.02562 * 5 4 3 36 36 H 1.09007 * 109.58898 * 353.41870 * 11 10 8 37 37 H 1.08999 * 109.58860 * 113.84271 * 11 10 8 38 38 H 1.09007 * 109.56511 * 185.55668 * 12 11 10 39 39 H 1.09003 * 109.36500 * 65.49937 * 12 11 10 40 40 H 1.08998 * 109.46179 * 301.22216 * 13 12 11 41 41 H 1.09001 * 110.71686 * 324.79265 * 16 14 13 42 42 H 1.09001 * 110.71554 * 88.06436 * 16 14 13 43 43 H 1.08994 * 109.84511 * 262.73356 * 17 16 14 44 44 H 1.08995 * 110.02895 * 141.64706 * 17 16 14 45 45 H 0.96999 * 119.99718 * 180.02562 * 22 21 19 46 46 H 1.09007 * 110.36707 * 217.02964 * 27 18 17 47 47 H 1.09004 * 110.36949 * 94.71294 * 27 18 17 48 48 H 1.09000 * 109.49908 * 178.68239 * 28 13 12 49 49 H 1.08998 * 109.50138 * 58.58382 * 28 13 12 50 50 H 1.09000 * 109.57877 * 246.15213 * 29 10 8 51 51 H 1.08990 * 109.58957 * 6.43318 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1470 0.0058 5 6 4.2322 -0.0837 0.0118 6 7 3.5407 -1.2023 0.0127 7 6 2.2132 -1.2003 0.0069 8 6 1.4767 -2.4860 0.0088 9 8 0.9545 -2.8884 -1.0120 10 7 1.3861 -3.2092 1.1425 11 6 1.9211 -2.6879 2.4076 12 6 2.8777 -3.7180 3.0054 13 6 2.1598 -5.0636 3.1331 14 6 3.1067 -6.0886 3.7605 15 1 4.0019 -6.2145 3.1516 16 6 2.3890 -7.4464 3.9817 17 6 3.1724 -8.0630 5.1602 18 7 3.8310 -6.9584 5.8727 19 6 4.6411 -7.0864 6.9693 20 1 5.0789 -6.2094 7.4226 21 6 4.9000 -8.3436 7.4979 22 7 4.3663 -9.4124 6.9455 23 14 6.0046 -8.5182 8.9942 24 1 5.1822 -8.4418 10.2282 25 1 6.7020 -9.8283 8.9444 26 1 7.0078 -7.4232 8.9993 27 6 3.4738 -5.6900 5.2117 28 6 1.7304 -5.5481 1.7463 29 6 0.7559 -4.5364 1.1354 30 1 -0.3634 0.0855 -1.0241 31 1 -0.3632 -0.9297 0.4380 32 1 -0.3634 0.8441 0.5862 33 1 1.6900 2.1415 -0.0041 34 1 4.1720 2.0599 0.0063 35 1 5.3113 -0.1248 0.0168 36 1 2.4579 -1.7575 2.2217 37 1 1.1022 -2.5067 3.1037 38 1 3.2038 -3.3848 3.9907 39 1 3.7439 -3.8282 2.3529 40 1 1.2799 -4.9472 3.7656 41 1 1.3447 -7.2909 4.2524 42 1 2.4692 -8.0740 3.0940 43 1 3.9213 -8.7593 4.7828 44 1 2.4889 -8.5822 5.8320 45 1 4.5470 -10.2908 7.3152 46 1 4.3244 -5.0082 5.2142 47 1 2.6180 -5.2317 5.7073 48 1 1.2400 -6.5175 1.8354 49 1 2.6074 -5.6411 1.1057 50 1 -0.1601 -4.5090 1.7256 51 1 0.5217 -4.8242 0.1106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039124726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:23 Heat of formation + Delta-G solvation = -2.850708 kcal Electronic energy + Delta-G solvation = -30358.298259 eV Core-core repulsion = 26449.783914 eV Total energy + Delta-G solvation = -3908.514344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.99343 -40.58835 -39.59825 -37.99497 -35.26134 -34.67185 -33.68537 -32.99765 -32.10975 -30.95354 -29.30074 -28.49375 -27.06242 -25.90507 -24.81355 -24.14532 -23.25471 -22.18383 -21.73503 -20.92362 -20.41908 -18.83453 -18.77313 -17.85042 -17.52807 -16.80138 -16.53057 -16.32157 -15.84769 -15.71068 -15.61112 -15.39232 -15.04707 -14.90629 -14.55471 -14.26229 -14.13264 -14.01419 -13.87298 -13.79871 -13.71492 -13.46083 -13.41325 -13.27462 -12.92347 -12.74263 -12.69726 -12.35633 -12.23061 -12.17490 -11.99604 -11.81365 -11.63793 -11.42485 -11.32905 -11.08866 -11.05054 -10.76336 -10.69536 -10.45423 -9.94442 -9.75360 -8.87099 -7.83854 -5.19012 -0.12857 0.25657 1.30268 1.44805 1.47252 1.55819 1.84755 2.50194 2.67877 3.11983 3.33899 3.59887 3.63658 3.67933 3.79069 3.83096 3.91394 3.98307 4.05709 4.07898 4.16330 4.28344 4.38838 4.42663 4.43163 4.49343 4.50859 4.57402 4.64831 4.71944 4.72981 4.78156 4.84581 4.88851 4.93786 4.99093 5.05673 5.06942 5.11532 5.14328 5.18732 5.21008 5.24432 5.41096 5.46859 5.49951 5.60288 5.66186 5.72018 5.80732 6.20377 6.22082 6.80747 6.92966 7.11973 7.80833 8.45734 9.26748 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002310 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.932424 B =12116.618909 C =13071.063285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.074 4.074 4 C -0.142 4.142 5 C 0.082 3.918 6 N -0.488 5.488 7 C 0.064 3.936 8 C 0.578 3.422 9 O -0.572 6.572 10 N -0.593 5.593 11 C 0.118 3.882 12 C -0.123 4.123 13 C -0.062 4.062 14 C -0.079 4.079 15 H 0.060 0.940 16 C -0.122 4.122 17 C 0.183 3.817 18 N -0.631 5.631 19 C -0.240 4.240 20 H 0.083 0.917 21 C -0.071 4.071 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.268 1.268 27 C 0.139 3.861 28 C -0.121 4.121 29 C 0.113 3.887 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.245 0.755 46 H 0.037 0.963 47 H 0.028 0.972 48 H 0.090 0.910 49 H 0.052 0.948 50 H 0.092 0.908 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 25.208 -14.559 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.112 4.112 3 C -0.100 4.100 4 C -0.161 4.161 5 C -0.077 4.077 6 N -0.198 5.198 7 C -0.074 4.074 8 C 0.365 3.635 9 O -0.451 6.451 10 N -0.325 5.325 11 C -0.004 4.004 12 C -0.161 4.161 13 C -0.080 4.080 14 C -0.098 4.098 15 H 0.079 0.921 16 C -0.161 4.161 17 C 0.058 3.942 18 N -0.358 5.358 19 C -0.370 4.370 20 H 0.100 0.900 21 C -0.264 4.264 22 N -0.603 5.603 23 Si 0.807 3.193 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.192 1.192 27 C 0.015 3.985 28 C -0.159 4.159 29 C -0.008 4.008 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.193 0.807 34 H 0.195 0.805 35 H 0.199 0.801 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.046 0.954 48 H 0.108 0.892 49 H 0.071 0.929 50 H 0.110 0.890 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.720 24.009 -14.944 29.315 hybrid contribution 0.580 -0.281 0.840 1.059 sum -7.140 23.728 -14.104 28.512 Atomic orbital electron populations 1.20824 0.88856 1.03638 1.03614 1.21069 0.98522 0.92735 0.98865 1.21909 0.94524 0.98276 0.95280 1.22748 0.95423 1.00357 0.97564 1.23333 1.01560 0.87389 0.95417 1.67585 1.06739 1.33815 1.11696 1.20759 0.90811 0.93158 1.02648 1.18304 0.78783 0.83463 0.82971 1.90750 1.49371 1.71389 1.33605 1.48156 1.57452 1.18231 1.08626 1.21712 0.97793 0.96875 0.84017 1.21817 0.98069 0.94630 1.01573 1.20995 0.97806 0.93317 0.95932 1.22204 0.97845 0.94730 0.95019 0.92137 1.22769 0.99083 0.96559 0.97649 1.20914 0.93032 0.89385 0.90897 1.44854 1.55721 1.02889 1.32297 1.19489 1.20674 0.93153 1.03640 0.89965 1.25694 1.02647 0.95304 1.02745 1.70213 1.49330 0.97549 1.43239 0.85067 0.78375 0.76877 0.78979 1.21174 1.22214 1.19243 1.21756 0.97074 0.88004 0.91709 1.21896 0.99247 0.99065 0.95656 1.21746 0.96013 0.80491 1.02598 0.90247 0.92959 0.87800 0.80694 0.80534 0.80113 0.90280 0.88967 0.89781 0.92647 0.89708 0.90649 0.90723 0.97871 0.97870 0.94541 0.94451 0.95396 0.89184 0.92895 0.89000 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.71 71.24 0.69 -0.81 16 2 C -0.11 -1.81 5.93 -19.52 -0.12 -1.92 16 3 C -0.07 -0.75 9.87 22.44 0.22 -0.53 16 4 C -0.14 -1.31 10.11 22.44 0.23 -1.08 16 5 C 0.08 1.23 11.18 84.83 0.95 2.18 16 6 N -0.49 -11.28 10.01 -184.91 -1.85 -13.13 16 7 C 0.06 1.49 4.59 41.89 0.19 1.68 16 8 C 0.58 15.65 5.71 86.88 0.50 16.15 16 9 O -0.57 -19.25 16.54 -3.77 -0.06 -19.31 16 10 N -0.59 -13.60 2.98 -822.81 -2.45 -16.05 16 11 C 0.12 2.28 6.32 86.22 0.55 2.82 16 12 C -0.12 -2.74 5.19 30.53 0.16 -2.58 16 13 C -0.06 -1.48 1.65 -10.77 -0.02 -1.50 16 14 C -0.08 -2.57 2.56 -9.40 -0.02 -2.60 16 15 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.12 -4.42 5.43 31.80 0.17 -4.25 16 17 C 0.18 9.30 5.38 86.74 0.47 9.77 16 18 N -0.63 -33.18 3.39 -691.88 -2.35 -35.53 16 19 C -0.24 -13.79 10.28 84.04 0.86 -12.93 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 21 C -0.07 -4.17 5.49 84.87 0.47 -3.70 16 22 N -0.95 -59.15 10.31 21.65 0.22 -58.92 16 23 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 C 0.14 5.57 5.80 86.86 0.50 6.07 16 28 C -0.12 -2.71 5.20 30.67 0.16 -2.55 16 29 C 0.11 2.42 6.42 86.36 0.55 2.97 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.87 6.91 -2.39 -0.02 0.86 16 32 H 0.10 0.74 8.12 -2.39 -0.02 0.72 16 33 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 34 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 35 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.08 1.54 6.11 -2.38 -0.01 1.52 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.83 7.32 -2.38 -0.02 1.81 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.90 8.13 -2.39 -0.02 1.88 16 41 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 42 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 43 H 0.00 0.17 7.38 -2.39 -0.02 0.16 16 44 H 0.00 0.18 7.50 -2.39 -0.02 0.16 16 45 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.04 1.47 8.02 -2.38 -0.02 1.45 16 47 H 0.03 1.07 8.03 -2.39 -0.02 1.05 16 48 H 0.09 1.88 7.32 -2.39 -0.02 1.86 16 49 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.08 1.94 7.03 -2.39 -0.02 1.92 16 Total: -1.00 -79.29 398.10 2.95 -76.33 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.91 Total: 10.74 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.51 Total: 7.20 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -6.43 Total: -123.64 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.06 Total: -19.31 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -79.29 2.95 -76.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039124726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.482 kcal (2) G-P(sol) polarization free energy of solvation -79.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds