Wall clock time and date at job start Wed Apr 1 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38170 * 119.54705 * 2 1 4 4 C 1.39803 * 118.99704 * 180.02562 * 3 2 1 5 5 C 1.48153 * 120.91920 * 180.02562 * 4 3 2 6 6 O 1.21513 * 119.99569 * 130.07750 * 5 4 3 7 7 N 1.34780 * 119.99999 * 310.07113 * 5 4 3 8 8 C 1.46924 * 120.62550 * 183.52683 * 7 5 4 9 9 C 1.53620 * 108.54176 * 126.37080 * 8 7 5 10 10 C 1.53044 * 109.24715 * 54.85189 * 9 8 7 11 11 C 1.52995 * 109.45274 * 178.49881 * 10 9 8 12 12 H 1.08999 * 110.88695 * 60.75797 * 11 10 9 13 13 C 1.55164 * 111.00327 * 296.88200 * 11 10 9 14 14 C 1.54375 * 102.91791 * 206.45464 * 13 11 10 15 15 N 1.47021 * 107.29054 * 22.13604 * 14 13 11 16 16 C 1.36931 * 125.64891 * 181.05504 * 15 14 13 17 17 H 1.07995 * 120.00120 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99761 * 0.04363 * 16 15 14 19 19 N 1.31614 * 120.00525 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47199 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47537 * 120.00007 * 20 18 16 23 23 H 1.48502 * 109.47324 * 240.00155 * 20 18 16 24 24 C 1.47428 * 108.70143 * 1.09563 * 15 14 13 25 25 C 1.53038 * 109.53619 * 298.51486 * 10 9 8 26 26 C 1.46925 * 120.63072 * 3.80218 * 7 5 4 27 27 C 1.39835 * 118.15619 * 0.02562 * 4 3 2 28 28 C 1.38125 * 119.00139 * 359.97438 * 27 4 3 29 29 N 1.31793 * 119.55530 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46859 * 269.97291 * 1 2 3 31 31 H 1.09004 * 109.47735 * 29.97603 * 1 2 3 32 32 H 1.09002 * 109.47205 * 149.97551 * 1 2 3 33 33 H 1.08001 * 120.50390 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.58086 * 246.19767 * 8 7 5 35 35 H 1.08992 * 109.59121 * 6.62521 * 8 7 5 36 36 H 1.09003 * 109.63792 * 294.86027 * 9 8 7 37 37 H 1.09003 * 109.43277 * 174.72345 * 9 8 7 38 38 H 1.08999 * 109.45458 * 58.52875 * 10 9 8 39 39 H 1.09003 * 110.71560 * 324.78719 * 13 11 10 40 40 H 1.08995 * 110.72176 * 88.05782 * 13 11 10 41 41 H 1.09001 * 109.84552 * 262.72748 * 14 13 11 42 42 H 1.09000 * 110.02611 * 141.65017 * 14 13 11 43 43 H 0.96997 * 120.00451 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.36406 * 217.03405 * 24 15 14 45 45 H 1.08995 * 110.46116 * 94.76008 * 24 15 14 46 46 H 1.09006 * 109.49341 * 301.41105 * 25 10 9 47 47 H 1.09002 * 109.49892 * 181.31852 * 25 10 9 48 48 H 1.08999 * 109.58687 * 353.37676 * 26 7 5 49 49 H 1.09001 * 109.58390 * 113.65662 * 26 7 5 50 50 H 1.07998 * 120.49605 * 180.24842 * 27 4 3 51 51 H 1.07998 * 119.54938 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5863 1.1886 -0.0005 5 6 4.3598 2.4522 0.0000 6 8 5.2551 2.6161 0.8050 7 7 4.0703 3.4199 -0.8925 8 6 4.8775 4.6459 -0.9552 9 6 5.3607 4.8392 -2.4006 10 6 4.1535 4.8330 -3.3412 11 6 4.6260 5.0627 -4.7781 12 1 5.3069 4.2725 -5.0943 13 6 5.2855 6.4589 -4.9303 14 6 5.0617 6.7855 -6.4224 15 7 3.9274 5.9713 -6.8826 16 6 3.4229 5.9526 -8.1555 17 1 2.5828 5.3173 -8.3941 18 6 3.9915 6.7500 -9.1392 19 7 5.0158 7.5237 -8.8487 20 14 3.3037 6.7240 -10.8758 21 1 2.1620 5.7767 -10.9419 22 1 2.8399 8.0855 -11.2450 23 1 4.3629 6.2886 -11.8212 24 6 3.4225 5.1790 -5.7465 25 6 3.4397 3.4825 -3.2489 26 6 2.9381 3.2713 -1.8169 27 6 4.2343 -0.0506 -0.0016 28 6 3.4741 -1.2038 -0.0016 29 7 2.1571 -1.1464 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3635 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6492 2.1378 0.0004 34 1 4.2700 5.4991 -0.6529 35 1 5.7363 4.5525 -0.2907 36 1 6.0375 4.0290 -2.6720 37 1 5.8821 5.7928 -2.4841 38 1 3.4652 5.6279 -3.0538 39 1 4.7868 7.1920 -4.2962 40 1 6.3499 6.4097 -4.7010 41 1 5.9549 6.5339 -6.9943 42 1 4.8311 7.8441 -6.5423 43 1 5.4129 8.0811 -9.5360 44 1 3.1093 4.1906 -6.0827 45 1 2.5935 5.6941 -5.2613 46 1 4.1346 2.6850 -3.5122 47 1 2.5938 3.4702 -3.9363 48 1 2.5170 2.2705 -1.7211 49 1 2.1747 4.0129 -1.5818 50 1 5.3129 -0.1050 0.0020 51 1 3.9654 -2.1656 -0.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039170660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:44 Heat of formation + Delta-G solvation = 20.102718 kcal Electronic energy + Delta-G solvation = -30134.416897 eV Core-core repulsion = 26226.897888 eV Total energy + Delta-G solvation = -3907.519009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.23667 -39.85073 -38.44037 -36.71169 -34.04436 -33.43144 -32.96084 -31.73467 -31.15669 -29.22548 -28.07300 -27.81126 -25.82560 -24.59374 -23.70863 -23.55723 -22.65468 -21.00948 -19.90593 -19.59657 -19.39316 -17.78722 -17.12526 -16.82085 -16.50340 -16.16634 -15.44712 -15.12388 -14.95238 -14.78648 -14.46860 -14.25816 -14.14403 -13.84506 -13.77974 -13.54658 -13.23821 -12.85677 -12.78385 -12.66321 -12.53564 -12.24651 -12.07953 -12.04028 -11.76667 -11.45086 -11.12599 -11.04099 -10.88799 -10.74801 -10.63773 -10.55004 -10.19690 -10.07932 -9.90815 -9.83594 -9.77896 -9.65866 -9.60318 -9.33145 -8.89197 -8.59594 -6.81215 -5.70520 -3.03686 0.48240 0.65180 2.31228 2.63546 3.33322 3.39141 3.44498 3.47071 3.86545 3.92077 4.33771 4.48648 4.49733 4.60294 4.62831 4.74367 4.76864 4.91713 5.00869 5.08346 5.09664 5.19657 5.21711 5.23057 5.34124 5.45595 5.47979 5.49953 5.59723 5.60676 5.64916 5.66176 5.68972 5.80308 5.83092 5.91206 5.98464 6.11834 6.13359 6.20239 6.31334 6.34058 6.42819 6.56401 6.59862 6.76232 6.99149 7.03409 7.53685 7.57808 7.65619 7.75465 7.84445 8.27733 9.23455 9.84246 10.50805 11.41238 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.002319 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.740932 B =12070.657070 C =13214.549610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.146 4.146 4 C -0.071 4.071 5 C 0.559 3.441 6 O -0.533 6.533 7 N -0.598 5.598 8 C 0.111 3.889 9 C -0.127 4.127 10 C -0.074 4.074 11 C -0.096 4.096 12 H 0.071 0.929 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.226 4.226 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.143 3.857 25 C -0.130 4.130 26 C 0.095 3.905 27 C -0.133 4.133 28 C 0.107 3.893 29 N -0.475 5.475 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.251 0.749 44 H 0.034 0.966 45 H 0.016 0.984 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.142 0.858 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -12.710 20.363 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.010 4.010 3 C -0.167 4.167 4 C -0.082 4.082 5 C 0.347 3.653 6 O -0.410 6.410 7 N -0.330 5.330 8 C -0.010 4.010 9 C -0.166 4.166 10 C -0.093 4.093 11 C -0.116 4.116 12 H 0.089 0.911 13 C -0.176 4.176 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.017 3.983 25 C -0.168 4.168 26 C -0.028 4.028 27 C -0.154 4.154 28 C -0.050 4.050 29 N -0.185 5.185 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.160 0.840 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.042 -13.256 20.565 24.981 hybrid contribution 0.270 0.891 -1.083 1.429 sum -4.772 -12.365 19.481 23.562 Atomic orbital electron populations 1.20760 0.88215 1.03963 1.03381 1.21291 0.97327 0.87780 0.94587 1.22172 0.93203 1.00123 1.01153 1.20308 0.94069 0.94312 0.99560 1.18271 0.83131 0.82919 0.81014 1.90796 1.31597 1.80083 1.38479 1.48074 1.31485 1.18541 1.34923 1.21829 0.95808 0.85155 0.98245 1.22056 0.98333 1.03012 0.93160 1.21105 0.96324 0.96662 0.95186 1.22350 0.98514 0.97911 0.92802 0.91067 1.22907 0.98992 0.95578 1.00160 1.21138 0.91076 0.95168 0.87430 1.44498 1.35418 1.47914 1.05505 1.19101 1.11494 1.20642 0.84251 0.90495 1.24804 0.98319 0.99245 0.98246 1.69980 1.24961 1.29892 1.32171 0.86063 0.78013 0.77259 0.84547 1.20520 1.21777 1.21791 1.21544 0.93621 0.94549 0.88611 1.21995 1.01424 0.98381 0.94983 1.22179 0.88025 1.02915 0.89656 1.22188 1.02059 0.91714 0.99438 1.22761 0.89094 0.98420 0.94759 1.67415 1.10283 1.29414 1.11364 0.90161 0.90322 0.90089 0.83976 0.91061 0.89003 0.91550 0.90062 0.90922 0.92640 0.92483 0.93849 0.94166 0.93862 0.94757 0.96645 0.91501 0.89914 0.89265 0.90710 0.83972 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.17 36.01 0.37 -0.23 16 2 C 0.13 1.08 6.78 -82.63 -0.56 0.52 16 3 C -0.15 -1.22 7.11 -39.02 -0.28 -1.49 16 4 C -0.07 -0.72 5.05 -104.64 -0.53 -1.25 16 5 C 0.56 6.66 7.31 -12.19 -0.09 6.57 16 6 O -0.53 -8.06 16.48 5.35 0.09 -7.97 16 7 N -0.60 -6.21 2.97 -173.51 -0.51 -6.73 16 8 C 0.11 1.15 6.45 -3.49 -0.02 1.12 16 9 C -0.13 -1.39 5.21 -26.39 -0.14 -1.53 16 10 C -0.07 -0.89 1.65 -90.58 -0.15 -1.03 16 11 C -0.10 -1.55 2.56 -88.47 -0.23 -1.78 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.14 -2.46 5.43 -24.87 -0.13 -2.60 16 14 C 0.18 4.27 5.38 -3.04 -0.02 4.25 16 15 N -0.61 -15.41 3.39 -170.04 -0.58 -15.99 16 16 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -27.26 10.31 55.49 0.57 -26.69 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.14 2.82 5.80 -2.53 -0.01 2.81 16 25 C -0.13 -1.36 5.21 -26.61 -0.14 -1.50 16 26 C 0.09 0.82 5.41 -3.71 -0.02 0.80 16 27 C -0.13 -1.22 9.86 -39.03 -0.38 -1.61 16 28 C 0.11 0.90 11.17 -17.59 -0.20 0.70 16 29 N -0.47 -4.59 10.25 -9.53 -0.10 -4.69 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.14 0.91 7.07 -52.49 -0.37 0.54 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.03 7.02 -51.93 -0.36 0.67 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.87 7.32 -51.93 -0.38 0.49 16 38 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.05 0.92 8.04 -51.93 -0.42 0.51 16 40 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 41 H 0.04 1.17 7.38 -51.93 -0.38 0.79 16 42 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 45 H 0.02 0.31 8.02 -51.93 -0.42 -0.11 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.88 7.32 -51.93 -0.38 0.50 16 48 H 0.09 0.71 4.51 -51.93 -0.23 0.47 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 51 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -33.73 396.32 -10.73 -44.45 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.37 Total: -2.34 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.78 Total: -3.11 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.62 Total: -54.10 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.73 -10.73 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039170660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.556 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds