Wall clock time and date at job start Wed Apr 1 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38170 * 119.54705 * 2 1 4 4 C 1.39803 * 118.99704 * 180.02562 * 3 2 1 5 5 C 1.48153 * 120.91920 * 180.02562 * 4 3 2 6 6 O 1.21513 * 119.99569 * 130.07750 * 5 4 3 7 7 N 1.34780 * 119.99999 * 310.07113 * 5 4 3 8 8 C 1.46924 * 120.62550 * 183.52683 * 7 5 4 9 9 C 1.53620 * 108.54176 * 126.37080 * 8 7 5 10 10 C 1.53044 * 109.24715 * 54.85189 * 9 8 7 11 11 C 1.52995 * 109.45274 * 178.49881 * 10 9 8 12 12 H 1.08999 * 110.88695 * 60.75797 * 11 10 9 13 13 C 1.55164 * 111.00327 * 296.88200 * 11 10 9 14 14 C 1.54375 * 102.91791 * 206.45464 * 13 11 10 15 15 N 1.47021 * 107.29054 * 22.13604 * 14 13 11 16 16 C 1.36931 * 125.64891 * 181.05504 * 15 14 13 17 17 H 1.07995 * 120.00120 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99761 * 0.04363 * 16 15 14 19 19 N 1.31614 * 120.00525 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99964 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47199 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47537 * 120.00007 * 20 18 16 23 23 H 1.48502 * 109.47324 * 240.00155 * 20 18 16 24 24 C 1.47428 * 108.70143 * 1.09563 * 15 14 13 25 25 C 1.53038 * 109.53619 * 298.51486 * 10 9 8 26 26 C 1.46925 * 120.63072 * 3.80218 * 7 5 4 27 27 C 1.39835 * 118.15619 * 0.02562 * 4 3 2 28 28 C 1.38125 * 119.00139 * 359.97438 * 27 4 3 29 29 N 1.31793 * 119.55530 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46859 * 269.97291 * 1 2 3 31 31 H 1.09004 * 109.47735 * 29.97603 * 1 2 3 32 32 H 1.09002 * 109.47205 * 149.97551 * 1 2 3 33 33 H 1.08001 * 120.50390 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.58086 * 246.19767 * 8 7 5 35 35 H 1.08992 * 109.59121 * 6.62521 * 8 7 5 36 36 H 1.09003 * 109.63792 * 294.86027 * 9 8 7 37 37 H 1.09003 * 109.43277 * 174.72345 * 9 8 7 38 38 H 1.08999 * 109.45458 * 58.52875 * 10 9 8 39 39 H 1.09003 * 110.71560 * 324.78719 * 13 11 10 40 40 H 1.08995 * 110.72176 * 88.05782 * 13 11 10 41 41 H 1.09001 * 109.84552 * 262.72748 * 14 13 11 42 42 H 1.09000 * 110.02611 * 141.65017 * 14 13 11 43 43 H 0.96997 * 120.00451 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.36406 * 217.03405 * 24 15 14 45 45 H 1.08995 * 110.46116 * 94.76008 * 24 15 14 46 46 H 1.09006 * 109.49341 * 301.41105 * 25 10 9 47 47 H 1.09002 * 109.49892 * 181.31852 * 25 10 9 48 48 H 1.08999 * 109.58687 * 353.37676 * 26 7 5 49 49 H 1.09001 * 109.58390 * 113.65662 * 26 7 5 50 50 H 1.07998 * 120.49605 * 180.24842 * 27 4 3 51 51 H 1.07998 * 119.54938 * 179.97438 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5863 1.1886 -0.0005 5 6 4.3598 2.4522 0.0000 6 8 5.2551 2.6161 0.8050 7 7 4.0703 3.4199 -0.8925 8 6 4.8775 4.6459 -0.9552 9 6 5.3607 4.8392 -2.4006 10 6 4.1535 4.8330 -3.3412 11 6 4.6260 5.0627 -4.7781 12 1 5.3069 4.2725 -5.0943 13 6 5.2855 6.4589 -4.9303 14 6 5.0617 6.7855 -6.4224 15 7 3.9274 5.9713 -6.8826 16 6 3.4229 5.9526 -8.1555 17 1 2.5828 5.3173 -8.3941 18 6 3.9915 6.7500 -9.1392 19 7 5.0158 7.5237 -8.8487 20 14 3.3037 6.7240 -10.8758 21 1 2.1620 5.7767 -10.9419 22 1 2.8399 8.0855 -11.2450 23 1 4.3629 6.2886 -11.8212 24 6 3.4225 5.1790 -5.7465 25 6 3.4397 3.4825 -3.2489 26 6 2.9381 3.2713 -1.8169 27 6 4.2343 -0.0506 -0.0016 28 6 3.4741 -1.2038 -0.0016 29 7 2.1571 -1.1464 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3635 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6492 2.1378 0.0004 34 1 4.2700 5.4991 -0.6529 35 1 5.7363 4.5525 -0.2907 36 1 6.0375 4.0290 -2.6720 37 1 5.8821 5.7928 -2.4841 38 1 3.4652 5.6279 -3.0538 39 1 4.7868 7.1920 -4.2962 40 1 6.3499 6.4097 -4.7010 41 1 5.9549 6.5339 -6.9943 42 1 4.8311 7.8441 -6.5423 43 1 5.4129 8.0811 -9.5360 44 1 3.1093 4.1906 -6.0827 45 1 2.5935 5.6941 -5.2613 46 1 4.1346 2.6850 -3.5122 47 1 2.5938 3.4702 -3.9363 48 1 2.5170 2.2705 -1.7211 49 1 2.1747 4.0129 -1.5818 50 1 5.3129 -0.1050 0.0020 51 1 3.9654 -2.1656 -0.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039170660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:43 Heat of formation + Delta-G solvation = 0.527457 kcal Electronic energy + Delta-G solvation = -30135.265744 eV Core-core repulsion = 26226.897888 eV Total energy + Delta-G solvation = -3908.367856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.98883 -40.65939 -39.67650 -38.00495 -35.34933 -34.22073 -33.80804 -33.19729 -31.99554 -30.93585 -29.28497 -28.59361 -27.13858 -25.96962 -24.60744 -24.50950 -23.48097 -21.96630 -21.73534 -20.88135 -20.22342 -18.83675 -18.57180 -17.81303 -17.27728 -16.89495 -16.78220 -16.33032 -16.10383 -15.78908 -15.70778 -15.36592 -15.12022 -14.94684 -14.52034 -14.35307 -14.28245 -14.11802 -13.83903 -13.79591 -13.47372 -13.32634 -13.19748 -13.05903 -12.91085 -12.75959 -12.69090 -12.35292 -12.23066 -12.16977 -11.95878 -11.82010 -11.64873 -11.48232 -11.33321 -11.16415 -11.06575 -10.82167 -10.70931 -10.42626 -9.94044 -9.75521 -8.87213 -7.84412 -5.19422 -0.21525 0.03899 1.45080 1.46017 1.46127 1.56382 1.84763 2.49753 2.69012 3.17665 3.33730 3.34107 3.63191 3.68259 3.74485 3.82626 3.89680 3.93115 4.01136 4.09989 4.17439 4.29865 4.39988 4.42841 4.44432 4.47426 4.54331 4.59122 4.68071 4.73117 4.79936 4.83373 4.84930 4.89712 4.92358 4.99399 5.00387 5.01057 5.07626 5.11974 5.20547 5.22819 5.25022 5.41409 5.47231 5.50437 5.60694 5.62698 5.71686 5.80650 6.20898 6.21901 6.89756 6.91874 7.11789 7.80809 8.45263 9.26320 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.002319 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.740932 B =12070.657070 C =13214.549610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.121 3.879 3 C -0.142 4.142 4 C -0.088 4.088 5 C 0.559 3.441 6 O -0.573 6.573 7 N -0.594 5.594 8 C 0.113 3.887 9 C -0.121 4.121 10 C -0.063 4.063 11 C -0.079 4.079 12 H 0.061 0.939 13 C -0.123 4.123 14 C 0.182 3.818 15 N -0.632 5.632 16 C -0.238 4.238 17 H 0.083 0.917 18 C -0.071 4.071 19 N -0.954 5.954 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.292 1.292 23 H -0.294 1.294 24 C 0.139 3.861 25 C -0.127 4.127 26 C 0.098 3.902 27 C -0.144 4.144 28 C 0.105 3.895 29 N -0.495 5.495 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.245 0.755 44 H 0.038 0.962 45 H 0.029 0.971 46 H 0.056 0.944 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.144 0.856 51 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 -13.588 21.567 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.016 4.016 3 C -0.162 4.162 4 C -0.099 4.099 5 C 0.347 3.653 6 O -0.454 6.454 7 N -0.326 5.326 8 C -0.008 4.008 9 C -0.159 4.159 10 C -0.082 4.082 11 C -0.098 4.098 12 H 0.080 0.920 13 C -0.161 4.161 14 C 0.057 3.943 15 N -0.358 5.358 16 C -0.367 4.367 17 H 0.101 0.899 18 C -0.264 4.264 19 N -0.604 5.604 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.014 3.986 25 C -0.165 4.165 26 C -0.023 4.023 27 C -0.165 4.165 28 C -0.052 4.052 29 N -0.206 5.206 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.182 0.818 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.162 0.838 51 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.152 -14.159 21.779 26.944 hybrid contribution 0.895 1.134 -1.465 2.057 sum -6.257 -13.025 20.314 24.929 Atomic orbital electron populations 1.20856 0.86273 1.04846 1.04239 1.21773 0.98664 0.87487 0.93723 1.22358 0.92397 1.01068 1.00379 1.20320 0.94897 0.93682 1.00959 1.18547 0.82657 0.83481 0.80619 1.90771 1.33474 1.80883 1.40239 1.48161 1.31654 1.18159 1.34580 1.21818 0.95932 0.85772 0.97315 1.21975 0.97660 1.02940 0.93315 1.21011 0.96991 0.98023 0.92196 1.22218 0.96507 0.96386 0.94724 0.92039 1.22766 1.00647 0.97075 0.95602 1.20918 0.89258 0.92975 0.91153 1.44859 1.35811 1.48858 1.06251 1.19522 1.11401 1.20105 0.85712 0.89893 1.25676 0.99009 0.99452 1.02266 1.70213 1.26389 1.30825 1.32942 0.85020 0.77592 0.77226 0.79587 1.18734 1.21959 1.22119 1.21766 0.95202 0.93908 0.87722 1.21948 1.01172 0.96964 0.96408 1.22290 0.87711 1.04451 0.87878 1.22318 1.02384 0.91927 0.99845 1.23131 0.88903 0.99178 0.93955 1.67486 1.10812 1.30265 1.12039 0.89210 0.88312 0.90353 0.81843 0.89155 0.90130 0.92596 0.89554 0.89779 0.90739 0.90778 0.97915 0.97990 0.94571 0.94337 0.95341 0.92499 0.89554 0.88180 0.88289 0.83807 0.79617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.17 71.24 0.72 -0.17 16 2 C 0.12 1.77 6.78 42.55 0.29 2.06 16 3 C -0.14 -2.01 7.11 22.63 0.16 -1.85 16 4 C -0.09 -1.64 5.05 -19.88 -0.10 -1.74 16 5 C 0.56 12.59 7.31 86.88 0.63 13.23 16 6 O -0.57 -17.21 16.48 -3.76 -0.06 -17.27 16 7 N -0.59 -10.95 2.97 -821.15 -2.44 -13.39 16 8 C 0.11 2.07 6.45 86.51 0.56 2.62 16 9 C -0.12 -2.36 5.21 30.82 0.16 -2.19 16 10 C -0.06 -1.33 1.65 -10.77 -0.02 -1.35 16 11 C -0.08 -2.41 2.56 -9.40 -0.02 -2.43 16 12 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 13 C -0.12 -4.24 5.43 31.80 0.17 -4.07 16 14 C 0.18 9.05 5.38 86.75 0.47 9.51 16 15 N -0.63 -32.33 3.39 -691.90 -2.35 -34.68 16 16 C -0.24 -13.40 10.28 84.03 0.86 -12.54 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 19 N -0.95 -58.45 10.31 21.65 0.22 -58.23 16 20 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 C 0.14 5.28 5.80 86.85 0.50 5.78 16 25 C -0.13 -2.29 5.21 30.67 0.16 -2.13 16 26 C 0.10 1.37 5.41 86.36 0.47 1.84 16 27 C -0.14 -2.53 9.86 22.63 0.22 -2.31 16 28 C 0.10 1.63 11.17 84.67 0.95 2.58 16 29 N -0.50 -8.79 10.25 -184.05 -1.89 -10.68 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.16 1.50 7.07 -2.91 -0.02 1.48 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.71 7.02 -2.39 -0.02 1.69 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.62 7.32 -2.39 -0.02 1.61 16 38 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 39 H 0.07 2.31 8.04 -2.39 -0.02 2.30 16 40 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 41 H 0.00 0.15 7.38 -2.39 -0.02 0.13 16 42 H 0.00 0.10 7.50 -2.39 -0.02 0.09 16 43 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.04 1.43 8.03 -2.39 -0.02 1.41 16 45 H 0.03 1.04 8.02 -2.39 -0.02 1.02 16 46 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.09 1.54 7.32 -2.39 -0.02 1.53 16 48 H 0.10 1.24 4.51 -2.39 -0.01 1.23 16 49 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 50 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 51 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -76.05 396.32 3.08 -72.97 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.91 Total: 10.03 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.65 Total: 3.17 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -6.45 Total: -116.98 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.06 Total: -17.27 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.05 3.08 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039170660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.497 kcal (2) G-P(sol) polarization free energy of solvation -76.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds