Wall clock time and date at job start Wed Apr 1 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38605 * 119.55221 * 2 1 4 4 C 1.38580 * 119.35286 * 179.97438 * 3 2 1 5 5 C 1.38636 * 118.48803 * 359.97438 * 4 3 2 6 6 C 1.39271 * 119.05826 * 359.97438 * 5 4 3 7 7 C 1.48173 * 119.71845 * 179.97438 * 6 5 4 8 8 O 1.21519 * 119.99715 * 21.63090 * 7 6 5 9 9 N 1.34777 * 119.99993 * 201.62020 * 7 6 5 10 10 C 1.46922 * 120.62699 * 0.40622 * 9 7 6 11 11 C 1.53191 * 108.77611 * 126.66589 * 10 9 7 12 12 C 1.53037 * 109.31507 * 54.62715 * 11 10 9 13 13 C 1.53042 * 109.54294 * 298.63962 * 12 11 10 14 14 C 1.46923 * 120.62977 * 180.67953 * 9 7 6 15 15 H 1.09000 * 109.58435 * 113.54941 * 14 9 7 16 16 C 1.52998 * 109.58707 * 353.27090 * 14 9 7 17 17 H 1.09005 * 110.64114 * 318.17973 * 16 14 9 18 18 C 1.55157 * 110.72324 * 81.32300 * 16 14 9 19 19 C 1.55124 * 101.48845 * 153.73442 * 18 16 14 20 20 N 1.47427 * 104.94034 * 323.22306 * 19 18 16 21 21 C 1.36936 * 125.64617 * 204.03910 * 20 19 18 22 22 H 1.08005 * 119.99822 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00303 * 359.95663 * 21 20 19 24 24 N 1.31622 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00104 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46756 * 90.00216 * 25 23 21 27 27 H 1.48507 * 109.47216 * 209.99944 * 25 23 21 28 28 H 1.48495 * 109.47009 * 330.00176 * 25 23 21 29 29 C 1.47027 * 108.70444 * 24.00245 * 20 19 18 30 30 N 1.31498 * 119.55010 * 180.24741 * 2 1 3 31 31 H 1.09008 * 109.46935 * 90.00093 * 1 2 3 32 32 H 1.09002 * 109.47584 * 209.99957 * 1 2 3 33 33 H 1.08999 * 109.47337 * 330.00788 * 1 2 3 34 34 H 1.07996 * 120.32037 * 359.95172 * 3 2 1 35 35 H 1.07997 * 120.75756 * 179.97438 * 4 3 2 36 36 H 1.07996 * 120.46996 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.58656 * 246.44913 * 10 9 7 38 38 H 1.08992 * 109.59303 * 6.87555 * 10 9 7 39 39 H 1.09005 * 109.49784 * 294.68426 * 11 10 9 40 40 H 1.09001 * 109.53138 * 174.59969 * 11 10 9 41 41 H 1.09003 * 109.46370 * 178.61580 * 12 11 10 42 42 H 1.09004 * 109.44702 * 58.65094 * 12 11 10 43 43 H 1.08998 * 109.49219 * 301.41504 * 13 12 11 44 44 H 1.08997 * 109.52769 * 181.33042 * 13 12 11 45 45 H 1.08997 * 111.00144 * 271.93713 * 18 16 14 46 46 H 1.09000 * 111.00037 * 35.79076 * 18 16 14 47 47 H 1.08997 * 110.41732 * 204.29697 * 19 18 16 48 48 H 1.08993 * 110.20544 * 82.04112 * 19 18 16 49 49 H 0.97002 * 119.99602 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.87975 * 239.52338 * 29 20 19 51 51 H 1.09003 * 109.88135 * 118.35724 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0199 0.0016 6 6 3.4820 -1.1925 0.0026 7 6 4.1691 -2.5052 0.0032 8 8 5.3177 -2.5896 0.3908 9 7 3.5201 -3.6057 -0.4259 10 6 2.1341 -3.5180 -0.9055 11 6 2.0541 -4.1475 -2.2998 12 6 2.6113 -5.5718 -2.2449 13 6 4.0802 -5.5306 -1.8171 14 6 4.1831 -4.9168 -0.4173 15 1 3.6927 -5.5696 0.3048 16 6 5.6549 -4.7448 -0.0364 17 1 6.0815 -3.8741 -0.5345 18 6 5.8138 -4.6295 1.5027 19 6 7.2616 -5.1490 1.7036 20 7 7.4160 -6.2346 0.7181 21 6 8.3032 -7.2739 0.8082 22 1 8.3387 -8.0225 0.0304 23 6 9.1569 -7.3652 1.8988 24 7 9.1135 -6.4531 2.8467 25 14 10.3666 -8.7833 2.0219 26 1 11.6444 -8.4020 1.3685 27 1 10.6164 -9.0983 3.4515 28 1 9.8006 -9.9769 1.3436 29 6 6.4592 -6.0171 -0.3768 30 7 2.1555 -1.1439 -0.0049 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.6485 2.1398 -0.0008 35 1 4.1319 2.1270 0.0001 36 1 5.3126 -0.0610 0.0025 37 1 1.4766 -4.0567 -0.2232 38 1 1.8313 -2.4724 -0.9588 39 1 2.6408 -3.5542 -3.0011 40 1 1.0149 -4.1758 -2.6277 41 1 2.5329 -6.0307 -3.2305 42 1 2.0398 -6.1576 -1.5250 43 1 4.6477 -4.9242 -2.5229 44 1 4.4834 -6.5432 -1.8010 45 1 5.7186 -3.5938 1.8287 46 1 5.0960 -5.2675 2.0184 47 1 7.3906 -5.5338 2.7152 48 1 7.9784 -4.3522 1.5055 49 1 9.7099 -6.5171 3.6090 50 1 5.7864 -6.8710 -0.4562 51 1 6.9956 -5.8766 -1.3153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039187506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:52 Heat of formation + Delta-G solvation = 68.965376 kcal Electronic energy + Delta-G solvation = -31448.808329 eV Core-core repulsion = 27543.408163 eV Total energy + Delta-G solvation = -3905.400165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.19667 -39.86116 -37.34227 -36.73733 -33.57588 -33.35252 -32.76179 -32.09535 -30.84391 -28.96667 -28.04583 -27.04865 -25.70892 -24.36838 -23.97694 -23.02406 -22.12260 -21.07249 -19.74812 -19.55132 -19.38195 -17.20647 -16.81559 -16.62758 -16.21854 -15.73469 -15.45527 -15.06166 -14.67023 -14.55590 -14.21200 -14.16357 -13.89408 -13.62641 -13.48095 -13.27003 -13.03428 -12.79583 -12.66083 -12.57574 -12.27152 -12.22278 -11.94382 -11.63349 -11.34512 -11.16886 -11.09290 -10.84247 -10.74016 -10.68439 -10.63954 -10.20127 -10.06084 -9.86257 -9.69997 -9.47585 -9.44280 -9.23864 -9.09649 -8.62086 -8.44560 -8.21718 -6.61810 -5.47103 -2.88550 0.49057 0.90069 2.72851 3.02584 3.48932 3.53018 3.55523 3.56470 3.86018 4.33634 4.46466 4.62918 4.68623 4.78956 4.85621 4.92088 5.00199 5.03963 5.17554 5.20512 5.22385 5.29680 5.40669 5.49634 5.62756 5.64669 5.66069 5.75566 5.78808 5.83294 5.85102 5.89832 6.02313 6.07186 6.12596 6.15697 6.20350 6.24487 6.39947 6.43661 6.55360 6.67476 6.74322 6.92731 7.08494 7.21688 7.38890 7.46470 7.61692 7.77106 7.88540 8.09464 8.39567 8.57475 9.40616 10.02233 10.70288 11.55643 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002993 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.534401 B = 9351.856142 C =10592.469970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.117 3.883 3 C -0.156 4.156 4 C -0.076 4.076 5 C -0.120 4.120 6 C 0.094 3.906 7 C 0.551 3.449 8 O -0.493 6.493 9 N -0.584 5.584 10 C 0.077 3.923 11 C -0.135 4.135 12 C -0.121 4.121 13 C -0.132 4.132 14 C 0.158 3.842 15 H 0.071 0.929 16 C -0.094 4.094 17 H 0.103 0.897 18 C -0.130 4.130 19 C 0.156 3.844 20 N -0.605 5.605 21 C -0.217 4.217 22 H 0.075 0.925 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.138 3.862 30 N -0.452 5.452 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.062 0.938 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.099 0.901 48 H 0.008 0.992 49 H 0.249 0.751 50 H 0.018 0.982 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.399 16.083 -9.403 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.022 4.022 3 C -0.176 4.176 4 C -0.101 4.101 5 C -0.141 4.141 6 C -0.044 4.044 7 C 0.338 3.662 8 O -0.368 6.368 9 N -0.316 5.316 10 C -0.045 4.045 11 C -0.173 4.173 12 C -0.159 4.159 13 C -0.170 4.170 14 C 0.056 3.944 15 H 0.089 0.911 16 C -0.113 4.113 17 H 0.120 0.880 18 C -0.168 4.168 19 C 0.032 3.968 20 N -0.331 5.331 21 C -0.346 4.346 22 H 0.092 0.908 23 C -0.210 4.210 24 N -0.570 5.570 25 Si 0.743 3.257 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.012 3.988 30 N -0.166 5.166 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.080 0.920 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.117 0.883 48 H 0.026 0.974 49 H 0.060 0.940 50 H 0.036 0.964 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -21.054 15.139 -9.053 27.466 hybrid contribution 1.068 -0.012 -0.034 1.068 sum -19.986 15.127 -9.087 26.662 Atomic orbital electron populations 1.20741 0.88367 1.03810 1.03253 1.21469 0.97250 0.88335 0.95138 1.22126 0.95023 0.99301 1.01190 1.21634 0.94415 0.98369 0.95722 1.22135 1.02457 0.91698 0.97807 1.21483 0.89405 0.94858 0.98625 1.17976 0.86110 0.82767 0.79362 1.90909 1.16317 1.84146 1.45446 1.47875 1.14243 1.07200 1.62298 1.22788 0.81766 1.06194 0.93777 1.21962 1.00905 0.96780 0.97700 1.21559 0.96455 0.96559 1.01286 1.22045 0.96233 1.02098 0.96590 1.21438 0.94296 0.82277 0.96398 0.91141 1.22675 0.91188 0.98538 0.98912 0.87967 1.23336 0.99792 1.00222 0.93475 1.21891 0.89461 0.88689 0.96796 1.44551 1.40720 1.27030 1.20785 1.19083 1.10558 1.00580 1.04393 0.90758 1.24783 1.00039 0.98799 0.97373 1.69864 1.40648 1.35004 1.11505 0.86109 0.81211 0.81656 0.76766 1.21799 1.21777 1.20830 1.21445 0.91507 0.94213 0.91682 1.67449 1.08691 1.28303 1.12130 0.90243 0.90181 0.90549 0.84492 0.84091 0.83350 0.91985 0.84530 0.92108 0.91280 0.92055 0.91923 0.91622 0.89987 0.90185 0.94106 0.88318 0.97367 0.93981 0.96439 0.96719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.17 36.00 0.37 -0.19 16 2 C 0.12 1.00 6.78 -82.60 -0.56 0.44 16 3 C -0.16 -1.13 9.75 -39.32 -0.38 -1.51 16 4 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 5 C -0.12 -1.34 9.63 -39.05 -0.38 -1.71 16 6 C 0.09 1.22 6.46 -83.01 -0.54 0.68 16 7 C 0.55 8.70 7.39 -12.18 -0.09 8.61 16 8 O -0.49 -9.31 9.46 5.35 0.05 -9.26 16 9 N -0.58 -8.51 2.97 -166.21 -0.49 -9.01 16 10 C 0.08 0.89 5.97 -3.71 -0.02 0.86 16 11 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 12 C -0.12 -1.32 5.88 -26.69 -0.16 -1.48 16 13 C -0.13 -1.82 4.75 -26.61 -0.13 -1.94 16 14 C 0.16 2.56 2.57 -67.60 -0.17 2.39 16 15 H 0.07 1.19 7.79 -51.93 -0.40 0.78 16 16 C -0.09 -1.90 1.91 -88.79 -0.17 -2.07 16 17 H 0.10 2.20 5.80 -52.49 -0.30 1.90 16 18 C -0.13 -2.94 5.78 -24.47 -0.14 -3.08 16 19 C 0.16 4.28 5.89 -2.41 -0.01 4.27 16 20 N -0.61 -16.98 3.40 -169.93 -0.58 -17.56 16 21 C -0.22 -6.48 10.27 -15.06 -0.15 -6.64 16 22 H 0.07 2.13 7.83 -52.48 -0.41 1.72 16 23 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 24 N -0.92 -28.66 10.09 55.49 0.56 -28.10 16 25 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 C 0.14 3.17 5.85 -3.06 -0.02 3.15 16 30 N -0.45 -5.05 6.27 -6.06 -0.04 -5.08 16 31 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 34 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.15 1.67 7.79 -52.49 -0.41 1.26 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.14 1.51 4.00 -78.44 -0.31 1.20 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.18 6.51 -51.93 -0.34 0.84 16 45 H 0.08 1.80 5.62 -51.94 -0.29 1.51 16 46 H 0.04 0.91 7.80 -51.93 -0.41 0.51 16 47 H 0.10 2.99 5.87 -51.93 -0.30 2.68 16 48 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.02 0.39 6.57 -51.93 -0.34 0.05 16 51 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -34.63 383.36 -11.11 -45.74 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.15 Total: 0.60 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.21 Total: -1.29 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.55 Total: -59.75 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.05 Total: -9.26 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.63 -11.11 -45.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039187506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.703 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds