Wall clock time and date at job start Wed Apr 1 2020 02:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38605 * 119.55221 * 2 1 4 4 C 1.38580 * 119.35286 * 179.97438 * 3 2 1 5 5 C 1.38636 * 118.48803 * 359.97438 * 4 3 2 6 6 C 1.39271 * 119.05826 * 359.97438 * 5 4 3 7 7 C 1.48173 * 119.71845 * 179.97438 * 6 5 4 8 8 O 1.21519 * 119.99715 * 21.63090 * 7 6 5 9 9 N 1.34777 * 119.99993 * 201.62020 * 7 6 5 10 10 C 1.46922 * 120.62699 * 0.40622 * 9 7 6 11 11 C 1.53191 * 108.77611 * 126.66589 * 10 9 7 12 12 C 1.53037 * 109.31507 * 54.62715 * 11 10 9 13 13 C 1.53042 * 109.54294 * 298.63962 * 12 11 10 14 14 C 1.46923 * 120.62977 * 180.67953 * 9 7 6 15 15 H 1.09000 * 109.58435 * 113.54941 * 14 9 7 16 16 C 1.52998 * 109.58707 * 353.27090 * 14 9 7 17 17 H 1.09005 * 110.64114 * 318.17973 * 16 14 9 18 18 C 1.55157 * 110.72324 * 81.32300 * 16 14 9 19 19 C 1.55124 * 101.48845 * 153.73442 * 18 16 14 20 20 N 1.47427 * 104.94034 * 323.22306 * 19 18 16 21 21 C 1.36936 * 125.64617 * 204.03910 * 20 19 18 22 22 H 1.08005 * 119.99822 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00303 * 359.95663 * 21 20 19 24 24 N 1.31622 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00104 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46756 * 90.00216 * 25 23 21 27 27 H 1.48507 * 109.47216 * 209.99944 * 25 23 21 28 28 H 1.48495 * 109.47009 * 330.00176 * 25 23 21 29 29 C 1.47027 * 108.70444 * 24.00245 * 20 19 18 30 30 N 1.31498 * 119.55010 * 180.24741 * 2 1 3 31 31 H 1.09008 * 109.46935 * 90.00093 * 1 2 3 32 32 H 1.09002 * 109.47584 * 209.99957 * 1 2 3 33 33 H 1.08999 * 109.47337 * 330.00788 * 1 2 3 34 34 H 1.07996 * 120.32037 * 359.95172 * 3 2 1 35 35 H 1.07997 * 120.75756 * 179.97438 * 4 3 2 36 36 H 1.07996 * 120.46996 * 180.02562 * 5 4 3 37 37 H 1.08998 * 109.58656 * 246.44913 * 10 9 7 38 38 H 1.08992 * 109.59303 * 6.87555 * 10 9 7 39 39 H 1.09005 * 109.49784 * 294.68426 * 11 10 9 40 40 H 1.09001 * 109.53138 * 174.59969 * 11 10 9 41 41 H 1.09003 * 109.46370 * 178.61580 * 12 11 10 42 42 H 1.09004 * 109.44702 * 58.65094 * 12 11 10 43 43 H 1.08998 * 109.49219 * 301.41504 * 13 12 11 44 44 H 1.08997 * 109.52769 * 181.33042 * 13 12 11 45 45 H 1.08997 * 111.00144 * 271.93713 * 18 16 14 46 46 H 1.09000 * 111.00037 * 35.79076 * 18 16 14 47 47 H 1.08997 * 110.41732 * 204.29697 * 19 18 16 48 48 H 1.08993 * 110.20544 * 82.04112 * 19 18 16 49 49 H 0.97002 * 119.99602 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.87975 * 239.52338 * 29 20 19 51 51 H 1.09003 * 109.88135 * 118.35724 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0199 0.0016 6 6 3.4820 -1.1925 0.0026 7 6 4.1691 -2.5052 0.0032 8 8 5.3177 -2.5896 0.3908 9 7 3.5201 -3.6057 -0.4259 10 6 2.1341 -3.5180 -0.9055 11 6 2.0541 -4.1475 -2.2998 12 6 2.6113 -5.5718 -2.2449 13 6 4.0802 -5.5306 -1.8171 14 6 4.1831 -4.9168 -0.4173 15 1 3.6927 -5.5696 0.3048 16 6 5.6549 -4.7448 -0.0364 17 1 6.0815 -3.8741 -0.5345 18 6 5.8138 -4.6295 1.5027 19 6 7.2616 -5.1490 1.7036 20 7 7.4160 -6.2346 0.7181 21 6 8.3032 -7.2739 0.8082 22 1 8.3387 -8.0225 0.0304 23 6 9.1569 -7.3652 1.8988 24 7 9.1135 -6.4531 2.8467 25 14 10.3666 -8.7833 2.0219 26 1 11.6444 -8.4020 1.3685 27 1 10.6164 -9.0983 3.4515 28 1 9.8006 -9.9769 1.3436 29 6 6.4592 -6.0171 -0.3768 30 7 2.1555 -1.1439 -0.0049 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.6485 2.1398 -0.0008 35 1 4.1319 2.1270 0.0001 36 1 5.3126 -0.0610 0.0025 37 1 1.4766 -4.0567 -0.2232 38 1 1.8313 -2.4724 -0.9588 39 1 2.6408 -3.5542 -3.0011 40 1 1.0149 -4.1758 -2.6277 41 1 2.5329 -6.0307 -3.2305 42 1 2.0398 -6.1576 -1.5250 43 1 4.6477 -4.9242 -2.5229 44 1 4.4834 -6.5432 -1.8010 45 1 5.7186 -3.5938 1.8287 46 1 5.0960 -5.2675 2.0184 47 1 7.3906 -5.5338 2.7152 48 1 7.9784 -4.3522 1.5055 49 1 9.7099 -6.5171 3.6090 50 1 5.7864 -6.8710 -0.4562 51 1 6.9956 -5.8766 -1.3153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039187506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:51 Heat of formation + Delta-G solvation = 48.556829 kcal Electronic energy + Delta-G solvation = -31449.693310 eV Core-core repulsion = 27543.408163 eV Total energy + Delta-G solvation = -3906.285146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22663 -40.86225 -38.75237 -38.29489 -35.03350 -34.22227 -33.93588 -33.15403 -32.36023 -30.90393 -28.77468 -28.61610 -27.10502 -26.07422 -24.96020 -24.12018 -23.05801 -22.37885 -21.52406 -21.06268 -20.57617 -18.88735 -18.18350 -17.62476 -17.19004 -16.87018 -16.63997 -16.50189 -16.35877 -15.64631 -15.55305 -15.29494 -14.92393 -14.79380 -14.62461 -14.29214 -14.17883 -14.09254 -13.96325 -13.62254 -13.45206 -13.30098 -13.05777 -13.03488 -12.90316 -12.84263 -12.73842 -12.28185 -12.18245 -12.04460 -11.96970 -11.73471 -11.63323 -11.54840 -11.29206 -11.10011 -10.85344 -10.77023 -10.42219 -9.94854 -9.76805 -9.46469 -8.88580 -7.75888 -5.22462 -0.30568 0.22202 1.43192 1.47331 1.56062 1.71532 1.92483 2.49342 2.74659 3.03964 3.31209 3.52060 3.69632 3.79107 3.84034 3.90187 4.03121 4.04854 4.09665 4.15095 4.20161 4.27206 4.36410 4.37526 4.50627 4.60844 4.62999 4.66694 4.71756 4.81154 4.88510 4.89964 4.91462 4.99886 5.04258 5.10784 5.13592 5.16983 5.17217 5.22123 5.25425 5.27343 5.34467 5.43241 5.46456 5.54221 5.62757 5.72392 5.81135 5.88299 6.28933 6.43412 6.75174 7.09525 7.21151 7.77905 8.45633 9.26037 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002993 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.534401 B = 9351.856142 C =10592.469970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.110 3.890 3 C -0.141 4.141 4 C -0.072 4.072 5 C -0.136 4.136 6 C 0.067 3.933 7 C 0.544 3.456 8 O -0.541 6.541 9 N -0.583 5.583 10 C 0.074 3.926 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.127 4.127 14 C 0.163 3.837 15 H 0.066 0.934 16 C -0.075 4.075 17 H 0.088 0.912 18 C -0.112 4.112 19 C 0.164 3.836 20 N -0.627 5.627 21 C -0.240 4.240 22 H 0.083 0.917 23 C -0.074 4.074 24 N -0.953 5.953 25 Si 0.987 3.013 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.265 1.265 29 C 0.136 3.864 30 N -0.464 5.464 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.133 0.867 37 H 0.067 0.933 38 H 0.147 0.853 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.041 0.959 47 H 0.067 0.933 48 H -0.028 1.028 49 H 0.246 0.754 50 H 0.033 0.967 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.658 17.092 -11.051 31.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 C -0.160 4.160 4 C -0.098 4.098 5 C -0.158 4.158 6 C -0.069 4.069 7 C 0.333 3.667 8 O -0.420 6.420 9 N -0.314 5.314 10 C -0.047 4.047 11 C -0.167 4.167 12 C -0.153 4.153 13 C -0.165 4.165 14 C 0.060 3.940 15 H 0.084 0.916 16 C -0.094 4.094 17 H 0.106 0.894 18 C -0.150 4.150 19 C 0.039 3.961 20 N -0.353 5.353 21 C -0.369 4.369 22 H 0.101 0.899 23 C -0.266 4.266 24 N -0.603 5.603 25 Si 0.815 3.185 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.190 1.190 29 C 0.011 3.989 30 N -0.178 5.178 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.196 0.804 35 H 0.189 0.811 36 H 0.151 0.849 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.085 0.915 48 H -0.010 1.010 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -24.365 16.140 -10.745 31.139 hybrid contribution 2.002 -0.176 0.473 2.064 sum -22.364 15.964 -10.272 29.334 Atomic orbital electron populations 1.20853 0.85774 1.04733 1.04520 1.22147 0.98892 0.88055 0.93910 1.22606 0.94623 1.00475 0.98304 1.21993 0.95254 0.98062 0.94447 1.22175 1.01979 0.92744 0.98863 1.21025 0.90467 0.93537 1.01916 1.18519 0.85791 0.84119 0.78319 1.90853 1.18326 1.85092 1.47722 1.48004 1.15392 1.06173 1.61869 1.23033 0.79724 1.07219 0.94728 1.21941 1.02565 0.95729 0.96419 1.21542 0.93907 0.97511 1.02340 1.21985 0.98765 1.01130 0.94628 1.21221 0.91307 0.83558 0.97912 0.91578 1.22438 0.93944 0.96392 0.96604 0.89406 1.23125 0.96339 0.99886 0.95639 1.21614 0.91613 0.87673 0.95221 1.44882 1.41449 1.26709 1.22256 1.19535 1.11240 1.01300 1.04835 0.89905 1.25775 1.02115 1.01742 0.96984 1.70141 1.41323 1.36919 1.11917 0.84948 0.78402 0.78577 0.76601 1.21345 1.21793 1.19001 1.21622 0.91073 0.96064 0.90171 1.67327 1.07609 1.30002 1.12862 0.88649 0.90795 0.88136 0.80448 0.81123 0.84859 0.91463 0.83700 0.92662 0.88259 0.90191 0.91290 0.92309 0.90611 0.90108 0.94073 0.91485 1.01037 0.94445 0.94959 0.96806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.17 71.23 0.72 0.04 16 2 C 0.11 1.54 6.78 42.70 0.29 1.83 16 3 C -0.14 -1.49 9.75 22.44 0.22 -1.27 16 4 C -0.07 -1.00 10.17 22.45 0.23 -0.78 16 5 C -0.14 -3.08 9.63 22.61 0.22 -2.86 16 6 C 0.07 1.75 6.46 41.90 0.27 2.02 16 7 C 0.54 17.96 7.39 86.88 0.64 18.60 16 8 O -0.54 -22.01 9.46 -3.77 -0.04 -22.04 16 9 N -0.58 -17.14 2.97 -798.07 -2.37 -19.51 16 10 C 0.07 1.59 5.97 86.36 0.52 2.10 16 11 C -0.13 -2.24 6.08 30.67 0.19 -2.05 16 12 C -0.12 -2.24 5.88 30.62 0.18 -2.06 16 13 C -0.13 -3.42 4.75 30.67 0.15 -3.28 16 14 C 0.16 5.35 2.57 44.97 0.12 5.46 16 15 H 0.07 2.23 7.79 -2.39 -0.02 2.22 16 16 C -0.07 -3.17 1.91 -9.61 -0.02 -3.19 16 17 H 0.09 4.04 5.80 -11.78 -0.07 3.97 16 18 C -0.11 -5.37 5.78 32.06 0.19 -5.18 16 19 C 0.16 9.64 5.89 86.93 0.51 10.15 16 20 N -0.63 -36.83 3.40 -691.54 -2.35 -39.17 16 21 C -0.24 -14.75 10.27 84.03 0.86 -13.88 16 22 H 0.08 4.80 7.83 -2.91 -0.02 4.78 16 23 C -0.07 -4.57 5.49 84.86 0.47 -4.10 16 24 N -0.95 -62.03 10.09 21.65 0.22 -61.81 16 25 Si 0.99 48.72 29.55 68.60 2.03 50.75 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 C 0.14 6.47 5.85 86.73 0.51 6.98 16 30 N -0.46 -9.76 6.27 -173.08 -1.09 -10.84 16 31 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.22 8.08 -2.39 -0.02 0.20 16 34 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.13 3.29 7.79 -2.91 -0.02 3.27 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.15 2.96 4.00 -54.73 -0.22 2.74 16 39 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.12 6.51 -2.39 -0.02 2.11 16 45 H 0.08 3.91 5.62 -3.00 -0.02 3.90 16 46 H 0.04 1.93 7.80 -2.39 -0.02 1.91 16 47 H 0.07 4.36 5.87 -2.39 -0.01 4.34 16 48 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 49 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.03 1.45 6.57 -2.39 -0.02 1.44 16 51 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -81.01 383.36 3.31 -77.70 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.66 Total: 16.41 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.25 Total: 8.53 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -5.59 Total: -131.34 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.04 Total: -22.04 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -81.01 3.31 -77.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039187506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.252 kcal (2) G-P(sol) polarization free energy of solvation -81.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds