Wall clock time and date at job start Wed Apr 1 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38354 * 119.46005 * 2 1 4 4 C 1.38353 * 119.30482 * 179.97438 * 3 2 1 5 5 C 1.40032 * 118.28769 * 359.97438 * 4 3 2 6 6 C 1.47841 * 120.55841 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00092 * 44.65667 * 6 5 4 8 8 N 1.34777 * 119.99721 * 224.65774 * 6 5 4 9 9 C 1.46962 * 120.65719 * 344.06503 * 8 6 5 10 10 C 1.53190 * 108.89077 * 233.53753 * 9 8 6 11 11 C 1.53045 * 109.31047 * 305.44230 * 10 9 8 12 12 C 1.53034 * 109.53973 * 61.36342 * 11 10 9 13 13 C 1.46931 * 120.63002 * 164.24715 * 8 6 5 14 14 H 1.08999 * 109.58224 * 246.32048 * 13 8 6 15 15 C 1.53003 * 109.58372 * 6.60360 * 13 8 6 16 16 H 1.08996 * 110.88466 * 51.77300 * 15 13 8 17 17 C 1.55156 * 111.00541 * 287.88581 * 15 13 8 18 18 C 1.54315 * 102.94309 * 206.38835 * 17 15 13 19 19 N 1.47019 * 107.27408 * 22.19348 * 18 17 15 20 20 C 1.36937 * 125.65237 * 181.01833 * 19 18 17 21 21 H 1.08005 * 120.00182 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99766 * 0.03342 * 20 19 18 23 23 N 1.31615 * 119.99909 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47660 * 59.99424 * 24 22 20 26 26 H 1.48504 * 109.46835 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47013 * 299.99437 * 24 22 20 28 28 C 1.47429 * 108.70142 * 1.29138 * 19 18 17 29 29 C 1.39521 * 118.88027 * 0.27767 * 5 4 3 30 30 N 1.31699 * 120.56522 * 359.40258 * 29 5 4 31 31 H 1.09005 * 109.46844 * 90.00237 * 1 2 3 32 32 H 1.08996 * 109.47278 * 210.00379 * 1 2 3 33 33 H 1.08998 * 109.47408 * 330.00568 * 1 2 3 34 34 H 1.08001 * 120.35259 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.85847 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.46576 * 113.74800 * 9 8 6 37 37 H 1.09005 * 109.70657 * 353.46158 * 9 8 6 38 38 H 1.09000 * 109.49780 * 185.49176 * 10 9 8 39 39 H 1.08998 * 109.50306 * 65.38605 * 10 9 8 40 40 H 1.09004 * 109.45737 * 301.34341 * 11 10 9 41 41 H 1.08993 * 109.46162 * 181.39341 * 11 10 9 42 42 H 1.09003 * 109.50269 * 178.68724 * 12 11 10 43 43 H 1.08992 * 109.52573 * 58.60322 * 12 11 10 44 44 H 1.09006 * 110.71660 * 88.02567 * 17 15 13 45 45 H 1.08993 * 110.87410 * 324.82582 * 17 15 13 46 46 H 1.09009 * 109.88505 * 262.77833 * 18 17 15 47 47 H 1.08998 * 110.01150 * 141.68985 * 18 17 15 48 48 H 0.97001 * 119.99475 * 180.02562 * 23 22 20 49 49 H 1.08990 * 110.36990 * 94.48031 * 28 19 18 50 50 H 1.09005 * 110.36751 * 216.80789 * 28 19 18 51 51 H 1.07995 * 119.71692 * 179.72252 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0028 7 8 6.3466 0.6262 0.7428 8 7 6.3470 -0.9550 -0.8167 9 6 5.6218 -2.0635 -1.4532 10 6 6.3512 -3.3750 -1.1455 11 6 7.8151 -3.2527 -1.5749 12 6 8.4883 -2.1286 -0.7843 13 6 7.7831 -0.8029 -1.0879 14 1 7.9313 -0.5417 -2.1357 15 6 8.3591 0.3002 -0.1978 16 1 8.1002 0.1309 0.8474 17 6 7.8838 1.7000 -0.6690 18 6 9.0122 2.6313 -0.1786 19 7 10.2142 1.8039 0.0005 20 6 11.4307 2.2491 0.4446 21 1 12.2557 1.5588 0.5420 22 6 11.6035 3.5875 0.7697 23 7 10.5983 4.4287 0.6507 24 14 13.2627 4.1946 1.3761 25 1 14.2926 3.9420 0.3365 26 1 13.1858 5.6517 1.6525 27 1 13.6290 3.4728 2.6213 28 6 9.8948 0.4168 -0.3834 29 6 3.4716 -1.2043 -0.0038 30 7 2.1558 -1.1487 0.0020 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6444 2.1382 0.0004 35 1 4.1274 2.1265 0.0001 36 1 5.5918 -1.9063 -2.5314 37 1 4.6054 -2.1103 -1.0623 38 1 5.8786 -4.1910 -1.6922 39 1 6.3018 -3.5764 -0.0754 40 1 7.8633 -3.0268 -2.6402 41 1 8.3305 -4.1931 -1.3798 42 1 9.5367 -2.0574 -1.0738 43 1 8.4191 -2.3414 0.2824 44 1 6.9355 1.9632 -0.2003 45 1 7.7986 1.7360 -1.7550 46 1 8.7308 3.0867 0.7710 47 1 9.2035 3.4076 -0.9194 48 1 10.7192 5.3640 0.8775 49 1 10.1683 0.2385 -1.4233 50 1 10.4100 -0.2862 0.2712 51 1 3.9669 -2.1640 -0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039192301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:04 Heat of formation + Delta-G solvation = 72.985269 kcal Electronic energy + Delta-G solvation = -31347.137206 eV Core-core repulsion = 27441.911356 eV Total energy + Delta-G solvation = -3905.225850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27883 -39.90847 -37.42173 -36.89761 -33.94446 -32.89065 -32.72240 -32.39660 -31.05333 -29.01376 -28.26012 -27.27936 -25.31506 -24.55846 -23.88157 -23.13615 -22.41634 -21.10300 -19.82432 -19.63432 -19.55623 -17.38966 -17.02154 -16.64050 -16.37306 -16.03663 -15.45406 -14.85517 -14.76741 -14.51546 -14.36404 -14.05223 -13.86816 -13.72711 -13.58253 -13.36899 -13.17062 -12.96389 -12.65458 -12.56324 -12.29914 -12.09499 -11.97959 -11.83622 -11.60563 -11.19221 -11.02023 -10.90933 -10.77101 -10.66928 -10.57861 -10.19195 -10.07674 -9.92869 -9.82000 -9.73344 -9.54603 -9.46053 -9.07823 -8.77523 -8.48181 -8.28088 -6.65185 -5.56599 -2.89287 0.53774 0.97476 2.67177 2.93611 3.47913 3.50204 3.51391 3.53177 3.89704 4.26627 4.44160 4.58378 4.61327 4.63580 4.70891 4.78611 4.83044 5.00773 5.07368 5.18468 5.23492 5.24063 5.27550 5.33845 5.43375 5.57228 5.61584 5.63248 5.64517 5.74918 5.76356 5.82710 5.86363 5.89965 6.00627 6.04320 6.11299 6.14259 6.29510 6.32372 6.39038 6.51967 6.65543 6.79449 6.93185 7.06072 7.33042 7.46164 7.60710 7.71277 7.88559 8.02195 8.26875 8.42975 9.37255 9.98381 10.66805 11.54659 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.003142 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.061677 B = 8910.389525 C =10678.858707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.136 3.864 3 C -0.172 4.172 4 C -0.023 4.023 5 C -0.176 4.176 6 C 0.547 3.453 7 O -0.481 6.481 8 N -0.604 5.604 9 C 0.072 3.928 10 C -0.134 4.134 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.162 3.838 14 H 0.071 0.929 15 C -0.096 4.096 16 H 0.106 0.894 17 C -0.140 4.140 18 C 0.183 3.817 19 N -0.605 5.605 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.139 3.861 29 C 0.113 3.887 30 N -0.486 5.486 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.037 0.963 46 H 0.043 0.957 47 H 0.034 0.966 48 H 0.250 0.750 49 H 0.011 0.989 50 H 0.034 0.966 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.076 -14.960 -5.685 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.001 4.001 3 C -0.192 4.192 4 C -0.049 4.049 5 C -0.181 4.181 6 C 0.335 3.665 7 O -0.356 6.356 8 N -0.338 5.338 9 C -0.050 4.050 10 C -0.172 4.172 11 C -0.157 4.157 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.088 0.912 15 C -0.115 4.115 16 H 0.124 0.876 17 C -0.178 4.178 18 C 0.058 3.942 19 N -0.331 5.331 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.012 3.988 29 C -0.044 4.044 30 N -0.196 5.196 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.028 0.972 50 H 0.052 0.948 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.107 -15.100 -5.204 25.678 hybrid contribution 1.491 1.160 0.115 1.893 sum -18.616 -13.940 -5.089 23.807 Atomic orbital electron populations 1.20757 0.88579 1.03701 1.03258 1.21476 0.97223 0.88371 0.93071 1.21956 0.94510 0.99562 1.03195 1.21696 0.94153 0.97767 0.91313 1.21159 0.95303 0.95519 1.06108 1.18015 0.86110 0.80787 0.81625 1.90885 1.65609 1.41687 1.37384 1.47848 1.09824 1.28835 1.47300 1.22566 0.97634 0.86202 0.98593 1.21913 0.96552 0.96621 1.02155 1.21527 0.95095 0.98951 1.00137 1.21999 1.00053 0.93918 1.00972 1.21372 0.77709 0.95618 0.99347 0.91157 1.22853 0.95157 0.92873 1.00624 0.87638 1.23357 1.00929 0.95758 0.97739 1.21064 0.83137 0.90849 0.99121 1.44464 1.08773 1.02740 1.77090 1.19014 0.87203 0.92724 1.36399 0.90720 1.24795 0.97634 0.96139 1.02113 1.69994 1.29410 1.03104 1.54407 0.86226 0.83409 0.77651 0.78631 1.21315 1.21686 1.21274 1.21656 0.92528 0.88389 0.96232 1.23385 0.89309 0.97836 0.93912 1.67561 1.09438 1.29203 1.13390 0.90160 0.90303 0.90486 0.84105 0.83657 0.91526 0.87530 0.90753 0.91385 0.91856 0.91720 0.90204 0.91332 0.89901 0.94425 0.93868 0.94787 0.93927 0.97190 0.94783 0.80566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.00 0.37 -0.28 16 2 C 0.14 1.28 6.78 -82.51 -0.56 0.72 16 3 C -0.17 -1.60 9.72 -39.50 -0.38 -1.98 16 4 C -0.02 -0.26 9.85 -38.87 -0.38 -0.65 16 5 C -0.18 -2.15 5.51 -104.82 -0.58 -2.73 16 6 C 0.55 8.03 6.57 -12.33 -0.08 7.95 16 7 O -0.48 -8.99 10.25 5.32 0.05 -8.93 16 8 N -0.60 -7.73 2.98 -166.29 -0.50 -8.22 16 9 C 0.07 0.66 5.97 -3.69 -0.02 0.63 16 10 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 11 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 12 C -0.13 -1.61 4.98 -26.61 -0.13 -1.74 16 13 C 0.16 2.35 2.49 -67.59 -0.17 2.19 16 14 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 15 C -0.10 -1.84 1.87 -88.35 -0.17 -2.01 16 16 H 0.11 2.28 6.13 -51.93 -0.32 1.96 16 17 C -0.14 -2.97 5.37 -24.90 -0.13 -3.11 16 18 C 0.18 4.89 5.37 -3.07 -0.02 4.88 16 19 N -0.60 -16.66 3.39 -169.93 -0.58 -17.24 16 20 C -0.22 -6.65 10.28 -15.06 -0.15 -6.80 16 21 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -28.64 10.31 55.49 0.57 -28.07 16 24 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.14 3.06 5.51 -2.41 -0.01 3.05 16 29 C 0.11 1.19 9.08 -17.13 -0.16 1.03 16 30 N -0.49 -5.24 10.25 -9.40 -0.10 -5.34 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.86 2.57 -52.53 -0.13 0.73 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.00 7.42 -51.93 -0.39 0.62 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.75 5.26 -52.96 -0.28 1.47 16 45 H 0.04 0.76 7.94 -51.93 -0.41 0.34 16 46 H 0.04 1.29 7.38 -51.92 -0.38 0.91 16 47 H 0.03 0.99 7.50 -51.93 -0.39 0.60 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.01 0.22 8.04 -51.93 -0.42 -0.19 16 50 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.18 1.49 5.50 -52.49 -0.29 1.21 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -35.10 384.39 -10.81 -45.91 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.04 Total: -0.24 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.00 Total: -1.75 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.60 Total: -58.87 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.05 Total: -8.93 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.10 -10.81 -45.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039192301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.894 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds