Wall clock time and date at job start Wed Apr 1 2020 02:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38354 * 119.46005 * 2 1 4 4 C 1.38353 * 119.30482 * 179.97438 * 3 2 1 5 5 C 1.40032 * 118.28769 * 359.97438 * 4 3 2 6 6 C 1.47841 * 120.55841 * 180.02562 * 5 4 3 7 7 O 1.21551 * 120.00092 * 44.65667 * 6 5 4 8 8 N 1.34777 * 119.99721 * 224.65774 * 6 5 4 9 9 C 1.46962 * 120.65719 * 344.06503 * 8 6 5 10 10 C 1.53190 * 108.89077 * 233.53753 * 9 8 6 11 11 C 1.53045 * 109.31047 * 305.44230 * 10 9 8 12 12 C 1.53034 * 109.53973 * 61.36342 * 11 10 9 13 13 C 1.46931 * 120.63002 * 164.24715 * 8 6 5 14 14 H 1.08999 * 109.58224 * 246.32048 * 13 8 6 15 15 C 1.53003 * 109.58372 * 6.60360 * 13 8 6 16 16 H 1.08996 * 110.88466 * 51.77300 * 15 13 8 17 17 C 1.55156 * 111.00541 * 287.88581 * 15 13 8 18 18 C 1.54315 * 102.94309 * 206.38835 * 17 15 13 19 19 N 1.47019 * 107.27408 * 22.19348 * 18 17 15 20 20 C 1.36937 * 125.65237 * 181.01833 * 19 18 17 21 21 H 1.08005 * 120.00182 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99766 * 0.03342 * 20 19 18 23 23 N 1.31615 * 119.99909 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47660 * 59.99424 * 24 22 20 26 26 H 1.48504 * 109.46835 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47013 * 299.99437 * 24 22 20 28 28 C 1.47429 * 108.70142 * 1.29138 * 19 18 17 29 29 C 1.39521 * 118.88027 * 0.27767 * 5 4 3 30 30 N 1.31699 * 120.56522 * 359.40258 * 29 5 4 31 31 H 1.09005 * 109.46844 * 90.00237 * 1 2 3 32 32 H 1.08996 * 109.47278 * 210.00379 * 1 2 3 33 33 H 1.08998 * 109.47408 * 330.00568 * 1 2 3 34 34 H 1.08001 * 120.35259 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.85847 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.46576 * 113.74800 * 9 8 6 37 37 H 1.09005 * 109.70657 * 353.46158 * 9 8 6 38 38 H 1.09000 * 109.49780 * 185.49176 * 10 9 8 39 39 H 1.08998 * 109.50306 * 65.38605 * 10 9 8 40 40 H 1.09004 * 109.45737 * 301.34341 * 11 10 9 41 41 H 1.08993 * 109.46162 * 181.39341 * 11 10 9 42 42 H 1.09003 * 109.50269 * 178.68724 * 12 11 10 43 43 H 1.08992 * 109.52573 * 58.60322 * 12 11 10 44 44 H 1.09006 * 110.71660 * 88.02567 * 17 15 13 45 45 H 1.08993 * 110.87410 * 324.82582 * 17 15 13 46 46 H 1.09009 * 109.88505 * 262.77833 * 18 17 15 47 47 H 1.08998 * 110.01150 * 141.68985 * 18 17 15 48 48 H 0.97001 * 119.99475 * 180.02562 * 23 22 20 49 49 H 1.08990 * 110.36990 * 94.48031 * 28 19 18 50 50 H 1.09005 * 110.36751 * 216.80789 * 28 19 18 51 51 H 1.07995 * 119.71692 * 179.72252 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0028 7 8 6.3466 0.6262 0.7428 8 7 6.3470 -0.9550 -0.8167 9 6 5.6218 -2.0635 -1.4532 10 6 6.3512 -3.3750 -1.1455 11 6 7.8151 -3.2527 -1.5749 12 6 8.4883 -2.1286 -0.7843 13 6 7.7831 -0.8029 -1.0879 14 1 7.9313 -0.5417 -2.1357 15 6 8.3591 0.3002 -0.1978 16 1 8.1002 0.1309 0.8474 17 6 7.8838 1.7000 -0.6690 18 6 9.0122 2.6313 -0.1786 19 7 10.2142 1.8039 0.0005 20 6 11.4307 2.2491 0.4446 21 1 12.2557 1.5588 0.5420 22 6 11.6035 3.5875 0.7697 23 7 10.5983 4.4287 0.6507 24 14 13.2627 4.1946 1.3761 25 1 14.2926 3.9420 0.3365 26 1 13.1858 5.6517 1.6525 27 1 13.6290 3.4728 2.6213 28 6 9.8948 0.4168 -0.3834 29 6 3.4716 -1.2043 -0.0038 30 7 2.1558 -1.1487 0.0020 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5137 34 1 1.6444 2.1382 0.0004 35 1 4.1274 2.1265 0.0001 36 1 5.5918 -1.9063 -2.5314 37 1 4.6054 -2.1103 -1.0623 38 1 5.8786 -4.1910 -1.6922 39 1 6.3018 -3.5764 -0.0754 40 1 7.8633 -3.0268 -2.6402 41 1 8.3305 -4.1931 -1.3798 42 1 9.5367 -2.0574 -1.0738 43 1 8.4191 -2.3414 0.2824 44 1 6.9355 1.9632 -0.2003 45 1 7.7986 1.7360 -1.7550 46 1 8.7308 3.0867 0.7710 47 1 9.2035 3.4076 -0.9194 48 1 10.7192 5.3640 0.8775 49 1 10.1683 0.2385 -1.4233 50 1 10.4100 -0.2862 0.2712 51 1 3.9669 -2.1640 -0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039192301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:03 Heat of formation + Delta-G solvation = 51.207510 kcal Electronic energy + Delta-G solvation = -31348.081560 eV Core-core repulsion = 27441.911356 eV Total energy + Delta-G solvation = -3906.170204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.29909 -40.87376 -38.74788 -38.37279 -35.20859 -34.30188 -33.59644 -33.34540 -32.51095 -30.88876 -29.02867 -28.85927 -26.81175 -26.00307 -24.80068 -24.15818 -23.45310 -22.21481 -21.66890 -21.14686 -20.55294 -18.88150 -18.25387 -17.88763 -17.26344 -17.24704 -16.71822 -16.59061 -15.80453 -15.66942 -15.52944 -15.42106 -14.97226 -14.81596 -14.61164 -14.37575 -14.10058 -14.08262 -13.95021 -13.75942 -13.52208 -13.34308 -13.16500 -13.02793 -12.95045 -12.83008 -12.70582 -12.24142 -12.08051 -12.06742 -11.90744 -11.73658 -11.62168 -11.45139 -11.30391 -11.11651 -10.89328 -10.72038 -10.67670 -10.13074 -9.85298 -9.45607 -8.88937 -7.84523 -5.21357 -0.28861 0.16268 1.41372 1.46909 1.53004 1.59802 1.93108 2.48670 2.68127 3.19265 3.30468 3.37155 3.62267 3.71643 3.77955 3.81225 3.88822 3.96872 4.04880 4.10273 4.19647 4.24682 4.31952 4.34498 4.39302 4.53282 4.58712 4.63220 4.72410 4.74258 4.76539 4.83587 4.90371 4.92307 4.96904 5.03800 5.08491 5.10801 5.14459 5.18079 5.19889 5.21966 5.29908 5.42764 5.48462 5.54733 5.60171 5.69084 5.73292 5.81339 6.18578 6.41512 6.82691 7.08468 7.15488 7.77549 8.44754 9.25928 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.003142 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.061677 B = 8910.389525 C =10678.858707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.135 3.865 3 C -0.169 4.169 4 C -0.039 4.039 5 C -0.194 4.194 6 C 0.547 3.453 7 O -0.536 6.536 8 N -0.600 5.600 9 C 0.069 3.931 10 C -0.130 4.130 11 C -0.115 4.115 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.077 0.923 15 C -0.075 4.075 16 H 0.081 0.919 17 C -0.123 4.123 18 C 0.195 3.805 19 N -0.629 5.629 20 C -0.245 4.245 21 H 0.084 0.916 22 C -0.074 4.074 23 N -0.955 5.955 24 Si 0.985 3.015 25 H -0.273 1.273 26 H -0.294 1.294 27 H -0.276 1.276 28 C 0.136 3.864 29 C 0.119 3.881 30 N -0.498 5.498 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.168 0.832 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.049 0.951 46 H -0.003 1.003 47 H -0.002 1.002 48 H 0.245 0.755 49 H 0.025 0.975 50 H 0.039 0.961 51 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.636 -17.724 -6.938 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.002 4.002 3 C -0.188 4.188 4 C -0.066 4.066 5 C -0.200 4.200 6 C 0.336 3.664 7 O -0.415 6.415 8 N -0.332 5.332 9 C -0.052 4.052 10 C -0.168 4.168 11 C -0.152 4.152 12 C -0.166 4.166 13 C 0.065 3.935 14 H 0.095 0.905 15 C -0.094 4.094 16 H 0.099 0.901 17 C -0.161 4.161 18 C 0.070 3.930 19 N -0.355 5.355 20 C -0.374 4.374 21 H 0.102 0.898 22 C -0.266 4.266 23 N -0.604 5.604 24 Si 0.812 3.188 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.202 1.202 28 C 0.010 3.990 29 C -0.038 4.038 30 N -0.208 5.208 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.186 0.814 35 H 0.152 0.848 36 H 0.099 0.901 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.015 0.985 47 H 0.016 0.984 48 H 0.054 0.946 49 H 0.043 0.957 50 H 0.057 0.943 51 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -21.686 -17.943 -6.495 28.886 hybrid contribution 1.882 1.998 0.503 2.791 sum -19.804 -15.945 -5.991 26.121 Atomic orbital electron populations 1.20873 0.86016 1.04732 1.04482 1.22088 0.98916 0.87941 0.91286 1.22233 0.93493 1.00950 1.02135 1.21787 0.95384 0.97268 0.92128 1.20996 0.93768 0.96668 1.08536 1.18447 0.87182 0.80034 0.80768 1.90856 1.66909 1.43903 1.39837 1.47950 1.09180 1.29408 1.46706 1.22856 0.97898 0.85305 0.99121 1.21932 0.95728 0.96647 1.02462 1.21517 0.95657 0.98020 1.00005 1.21960 0.99973 0.93772 1.00920 1.21182 0.79044 0.95138 0.98176 0.90489 1.22573 0.93065 0.93407 1.00386 0.90121 1.23191 0.98857 0.95837 0.98183 1.20756 0.85067 0.91307 0.95846 1.44823 1.08418 1.05083 1.77146 1.19497 0.88345 0.93312 1.36231 0.89803 1.25785 1.01742 0.96370 1.02698 1.70259 1.31684 1.02974 1.55475 0.85066 0.78736 0.76579 0.78425 1.19848 1.21983 1.20221 1.21859 0.94663 0.85746 0.96706 1.23612 0.89338 0.97870 0.92947 1.67673 1.09283 1.29872 1.13964 0.88649 0.90205 0.88567 0.81412 0.84837 0.90124 0.86384 0.87572 0.91755 0.90885 0.90158 0.90602 0.92524 0.89688 0.93213 0.98491 0.98402 0.94566 0.95725 0.94289 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.16 71.24 0.72 -0.23 16 2 C 0.13 2.23 6.78 42.57 0.29 2.52 16 3 C -0.17 -2.87 9.72 22.32 0.22 -2.65 16 4 C -0.04 -0.91 9.85 22.73 0.22 -0.68 16 5 C -0.19 -4.72 5.51 -19.99 -0.11 -4.83 16 6 C 0.55 16.28 6.57 86.79 0.57 16.85 16 7 O -0.54 -21.20 10.25 -3.88 -0.04 -21.24 16 8 N -0.60 -14.74 2.98 -798.30 -2.38 -17.12 16 9 C 0.07 1.05 5.97 86.35 0.52 1.56 16 10 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 11 C -0.11 -1.71 5.88 30.62 0.18 -1.53 16 12 C -0.13 -2.94 4.98 30.67 0.15 -2.79 16 13 C 0.17 4.74 2.49 44.98 0.11 4.85 16 14 H 0.08 2.12 8.00 -2.39 -0.02 2.11 16 15 C -0.07 -2.97 1.87 -9.32 -0.02 -2.99 16 16 H 0.08 3.67 6.13 -2.39 -0.01 3.66 16 17 C -0.12 -5.49 5.37 31.78 0.17 -5.32 16 18 C 0.20 11.20 5.37 86.73 0.47 11.67 16 19 N -0.63 -36.17 3.39 -691.54 -2.35 -38.52 16 20 C -0.24 -14.94 10.28 84.03 0.86 -14.07 16 21 H 0.08 4.81 7.83 -2.91 -0.02 4.79 16 22 C -0.07 -4.53 5.49 84.86 0.47 -4.06 16 23 N -0.95 -62.49 10.31 21.65 0.22 -62.27 16 24 Si 0.98 48.73 29.55 68.60 2.03 50.76 16 25 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 28 C 0.14 6.12 5.51 86.93 0.48 6.60 16 29 C 0.12 2.31 9.08 85.02 0.77 3.09 16 30 N -0.50 -9.64 10.25 -183.65 -1.88 -11.53 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.53 8.07 -2.39 -0.02 0.51 16 34 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 1.56 2.57 -2.95 -0.01 1.55 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.80 7.42 -2.39 -0.02 1.78 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 3.84 5.26 -18.77 -0.10 3.74 16 45 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 46 H 0.00 -0.21 7.38 -2.38 -0.02 -0.23 16 47 H 0.00 -0.14 7.50 -2.39 -0.02 -0.16 16 48 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 49 H 0.03 1.06 8.04 -2.39 -0.02 1.04 16 50 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 51 H 0.20 2.82 5.50 -2.91 -0.02 2.81 16 Total: -1.00 -81.89 384.39 2.70 -79.19 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.84 Total: 14.13 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.26 Total: 6.61 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -6.39 Total: -129.44 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.03 Total: 50.76 kcal Total: -81.89 2.70 -79.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039192301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.395 kcal (2) G-P(sol) polarization free energy of solvation -81.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds