Wall clock time and date at job start Wed Apr 1 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38352 * 119.46308 * 2 1 4 4 C 1.38358 * 119.30228 * 179.97438 * 3 2 1 5 5 C 1.40020 * 118.29305 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.56318 * 180.02562 * 5 4 3 7 7 O 1.21553 * 119.99739 * 36.59163 * 6 5 4 8 8 N 1.34774 * 120.00098 * 216.58752 * 6 5 4 9 9 C 1.46931 * 120.62956 * 6.55054 * 8 6 5 10 10 C 1.53190 * 108.77505 * 126.36831 * 9 8 6 11 11 C 1.53036 * 109.31321 * 54.63138 * 10 9 8 12 12 C 1.53039 * 109.54128 * 298.63418 * 11 10 9 13 13 C 1.46922 * 120.63053 * 186.26654 * 8 6 5 14 14 H 1.09008 * 109.58880 * 113.84591 * 13 8 6 15 15 C 1.53001 * 109.58910 * 353.42210 * 13 8 6 16 16 H 1.09007 * 110.88358 * 314.62942 * 15 13 8 17 17 C 1.55155 * 111.00414 * 78.50618 * 15 13 8 18 18 C 1.54330 * 102.94220 * 153.58046 * 17 15 13 19 19 N 1.47018 * 107.26701 * 337.80797 * 18 17 15 20 20 C 1.36939 * 125.64644 * 178.90244 * 19 18 17 21 21 H 1.08003 * 119.99978 * 180.02562 * 20 19 18 22 22 C 1.38814 * 119.99930 * 0.02562 * 20 19 18 23 23 N 1.31617 * 119.99902 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00041 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47239 * 89.99787 * 24 22 20 26 26 H 1.48506 * 109.46884 * 210.00049 * 24 22 20 27 27 H 1.48504 * 109.46951 * 329.99632 * 24 22 20 28 28 C 1.47470 * 108.72634 * 358.97403 * 19 18 17 29 29 C 1.39524 * 118.87932 * 359.97438 * 5 4 3 30 30 N 1.31700 * 120.56529 * 0.03187 * 29 5 4 31 31 H 1.09000 * 109.46983 * 270.03470 * 1 2 3 32 32 H 1.09003 * 109.46440 * 30.02735 * 1 2 3 33 33 H 1.08992 * 109.47244 * 150.02802 * 1 2 3 34 34 H 1.07994 * 120.35017 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.85393 * 180.02562 * 4 3 2 36 36 H 1.09008 * 109.58279 * 246.15198 * 9 8 6 37 37 H 1.08994 * 109.58704 * 6.43232 * 9 8 6 38 38 H 1.08998 * 109.49633 * 174.58293 * 10 9 8 39 39 H 1.08996 * 109.49475 * 294.65173 * 10 9 8 40 40 H 1.09004 * 109.46412 * 58.65981 * 11 10 9 41 41 H 1.09000 * 109.46174 * 178.62498 * 11 10 9 42 42 H 1.09000 * 109.49826 * 181.31544 * 12 11 10 43 43 H 1.08999 * 109.49453 * 301.38306 * 12 11 10 44 44 H 1.08998 * 110.72017 * 271.94112 * 17 15 13 45 45 H 1.08997 * 110.72147 * 35.21662 * 17 15 13 46 46 H 1.09001 * 109.88155 * 97.22586 * 18 17 15 47 47 H 1.09001 * 109.88225 * 218.23718 * 18 17 15 48 48 H 0.97006 * 120.00163 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.34537 * 265.25306 * 28 19 18 50 50 H 1.08999 * 110.40245 * 142.91821 * 28 19 18 51 51 H 1.08000 * 119.71741 * 180.29793 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 0.0005 5 6 4.2313 -0.0341 0.0016 6 6 5.7083 -0.0968 0.0028 7 8 6.3509 0.7222 0.6305 8 7 6.3424 -1.0620 -0.6919 9 6 5.5905 -1.9702 -1.5687 10 6 6.2165 -1.9369 -2.9664 11 6 7.7090 -2.2582 -2.8603 12 6 8.4001 -1.2008 -1.9962 13 6 7.7994 -1.2222 -0.5918 14 1 8.0304 -2.1738 -0.1130 15 6 8.3862 -0.0744 0.2324 16 1 7.9642 0.8818 -0.0774 17 6 8.1696 -0.3122 1.7502 18 6 9.3321 0.4736 2.3926 19 7 10.3779 0.6198 1.3696 20 6 11.5684 1.2763 1.5335 21 1 12.2733 1.3284 0.7168 22 6 11.8693 1.8749 2.7493 23 7 11.0105 1.8109 3.7446 24 14 13.4930 2.7711 2.9726 25 1 13.3273 4.1974 2.5940 26 1 13.9162 2.6819 4.3933 27 1 14.5263 2.1462 2.1082 28 6 9.9322 -0.0561 0.1370 29 6 3.4716 -1.2044 0.0027 30 7 2.1558 -1.1487 0.0020 31 1 -0.3633 0.0006 1.0277 32 1 -0.3632 0.8898 -0.5143 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6445 2.1381 0.0004 35 1 4.1276 2.1263 0.0010 36 1 5.6376 -2.9841 -1.1712 37 1 4.5509 -1.6473 -1.6238 38 1 5.7293 -2.6771 -3.6010 39 1 6.0874 -0.9450 -3.3993 40 1 7.8377 -3.2401 -2.4048 41 1 8.1520 -2.2592 -3.8562 42 1 9.4669 -1.4172 -1.9403 43 1 8.2513 -0.2157 -2.4385 44 1 7.2086 0.0905 2.0703 45 1 8.2431 -1.3732 1.9887 46 1 8.9843 1.4566 2.7103 47 1 9.7225 -0.0760 3.2491 48 1 11.2206 2.2295 4.5941 49 1 10.3221 -1.0733 0.1003 50 1 10.2515 0.5054 -0.7410 51 1 3.9668 -2.1641 0.0084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039192302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:08 Heat of formation + Delta-G solvation = 58.077610 kcal Electronic energy + Delta-G solvation = -31290.208694 eV Core-core repulsion = 27384.336399 eV Total energy + Delta-G solvation = -3905.872294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.23439 -39.92670 -37.41480 -36.88185 -33.90558 -32.93012 -32.67506 -32.39824 -31.04367 -29.01470 -28.25940 -27.19857 -25.25881 -24.49847 -23.90702 -23.19497 -22.38616 -21.10383 -19.78291 -19.61427 -19.55401 -17.34420 -16.89847 -16.63041 -16.22699 -15.85148 -15.30361 -15.13177 -14.72981 -14.50976 -14.35237 -14.13049 -13.97600 -13.72225 -13.52448 -13.38345 -13.14193 -12.92376 -12.71769 -12.59268 -12.34783 -12.10406 -12.02406 -11.81551 -11.60976 -11.27877 -11.06832 -10.89426 -10.78929 -10.69732 -10.61307 -10.13955 -10.10154 -9.95908 -9.84956 -9.60390 -9.52767 -9.45863 -9.15028 -8.70456 -8.44297 -8.32902 -6.63527 -5.55328 -2.88129 0.50726 0.96989 2.74334 2.91428 3.47940 3.51967 3.53025 3.54474 3.91348 4.35377 4.41057 4.55271 4.62081 4.64819 4.70425 4.75191 4.82717 5.00108 5.06233 5.19125 5.22026 5.23077 5.24971 5.35743 5.38903 5.56112 5.61725 5.62800 5.63781 5.73848 5.76302 5.82189 5.85391 5.89326 6.00885 6.05353 6.12347 6.16493 6.31366 6.32534 6.41153 6.54060 6.65995 6.79967 6.97766 7.10814 7.35485 7.44238 7.61395 7.73195 7.91842 8.04806 8.30955 8.44394 9.38496 9.99665 10.68184 11.55817 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003048 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.235755 B = 9184.941815 C =10679.373003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.139 3.861 3 C -0.177 4.177 4 C -0.020 4.020 5 C -0.182 4.182 6 C 0.546 3.454 7 O -0.487 6.487 8 N -0.601 5.601 9 C 0.096 3.904 10 C -0.134 4.134 11 C -0.120 4.120 12 C -0.132 4.132 13 C 0.162 3.838 14 H 0.071 0.929 15 C -0.096 4.096 16 H 0.107 0.893 17 C -0.134 4.134 18 C 0.182 3.818 19 N -0.605 5.605 20 C -0.224 4.224 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.138 3.862 29 C 0.131 3.869 30 N -0.489 5.489 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.037 0.963 46 H 0.043 0.957 47 H 0.034 0.966 48 H 0.250 0.750 49 H 0.010 0.990 50 H 0.033 0.967 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.077 -8.221 -13.864 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.197 4.197 4 C -0.046 4.046 5 C -0.187 4.187 6 C 0.334 3.666 7 O -0.362 6.362 8 N -0.335 5.335 9 C -0.027 4.027 10 C -0.172 4.172 11 C -0.158 4.158 12 C -0.170 4.170 13 C 0.059 3.941 14 H 0.089 0.911 15 C -0.115 4.115 16 H 0.125 0.875 17 C -0.171 4.171 18 C 0.058 3.942 19 N -0.331 5.331 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.011 3.989 29 C -0.027 4.027 30 N -0.199 5.199 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.028 0.972 50 H 0.051 0.949 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.083 -8.435 -13.331 26.332 hybrid contribution 1.420 1.151 0.189 1.838 sum -19.663 -7.283 -13.142 24.747 Atomic orbital electron populations 1.20764 0.88586 1.03624 1.03365 1.21492 0.97240 0.88375 0.92683 1.21946 0.94530 0.99528 1.03710 1.21711 0.94089 0.97830 0.90986 1.21148 0.95304 0.95436 1.06811 1.18099 0.86172 0.82170 0.80209 1.90919 1.64915 1.38960 1.41388 1.47926 1.08044 1.32763 1.44797 1.22103 0.96209 0.93997 0.90354 1.21910 0.96637 1.02403 0.96247 1.21542 0.94770 0.99232 1.00222 1.21947 1.00568 0.99584 0.94898 1.21304 0.77161 0.99842 0.95782 0.91125 1.22861 0.95184 0.98084 0.95371 0.87501 1.23220 1.00901 0.98330 0.94691 1.21064 0.85326 0.97507 0.90320 1.44487 1.17538 1.62708 1.08348 1.19056 0.92775 1.26213 0.97228 0.90695 1.24799 0.98396 1.01284 0.96244 1.70011 1.34829 1.48917 1.03078 0.86154 0.83231 0.79694 0.76906 1.21749 1.21787 1.20815 1.21650 0.91848 0.94861 0.90505 1.23156 0.89192 0.97839 0.92544 1.67558 1.09500 1.29133 1.13671 0.90081 0.90520 0.90288 0.84188 0.83717 0.91078 0.89429 0.90882 0.91533 0.91770 0.91732 0.90017 0.91433 0.90086 0.94422 0.93925 0.94797 0.93980 0.97196 0.94889 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.00 0.37 -0.27 16 2 C 0.14 1.29 6.78 -82.51 -0.56 0.73 16 3 C -0.18 -1.59 9.72 -39.50 -0.38 -1.97 16 4 C -0.02 -0.22 9.77 -38.87 -0.38 -0.60 16 5 C -0.18 -2.20 5.24 -104.82 -0.55 -2.75 16 6 C 0.55 7.93 7.08 -12.33 -0.09 7.85 16 7 O -0.49 -9.04 9.87 5.32 0.05 -8.99 16 8 N -0.60 -7.57 2.98 -166.58 -0.50 -8.07 16 9 C 0.10 0.86 4.82 -3.71 -0.02 0.84 16 10 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 11 C -0.12 -1.10 5.88 -26.69 -0.16 -1.25 16 12 C -0.13 -1.61 4.81 -26.83 -0.13 -1.74 16 13 C 0.16 2.32 2.57 -67.82 -0.17 2.15 16 14 H 0.07 1.02 7.86 -51.92 -0.41 0.61 16 15 C -0.10 -1.84 1.91 -88.48 -0.17 -2.01 16 16 H 0.11 2.29 5.90 -52.25 -0.31 1.98 16 17 C -0.13 -2.88 5.59 -24.89 -0.14 -3.02 16 18 C 0.18 4.93 5.37 -3.06 -0.02 4.91 16 19 N -0.60 -16.71 3.40 -170.04 -0.58 -17.28 16 20 C -0.22 -6.64 10.28 -15.06 -0.15 -6.79 16 21 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 23 N -0.92 -28.78 10.31 55.49 0.57 -28.21 16 24 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.14 3.04 5.34 -2.51 -0.01 3.03 16 29 C 0.13 1.40 8.55 -17.13 -0.15 1.25 16 30 N -0.49 -5.30 10.25 -9.14 -0.09 -5.40 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.07 0.54 8.07 -51.92 -0.42 0.12 16 37 H 0.09 0.73 4.60 -51.93 -0.24 0.49 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.03 7.13 -51.93 -0.37 0.66 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.78 5.58 -51.98 -0.29 1.49 16 45 H 0.04 0.76 7.84 -51.93 -0.41 0.36 16 46 H 0.04 1.29 7.38 -51.93 -0.38 0.91 16 47 H 0.03 1.00 7.50 -51.93 -0.39 0.61 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.01 0.22 7.80 -51.93 -0.41 -0.18 16 50 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 51 H 0.16 1.47 6.26 -52.49 -0.33 1.14 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -35.15 384.50 -10.88 -46.03 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.14 Total: -0.70 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.97 Total: -1.33 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.59 Total: -58.96 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.05 Total: -8.99 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.15 -10.88 -46.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039192302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.106 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds