Wall clock time and date at job start Wed Apr 1 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38349 * 119.46149 * 2 1 4 4 C 1.38353 * 119.30476 * 179.97438 * 3 2 1 5 5 C 1.40025 * 118.29039 * 0.02562 * 4 3 2 6 6 C 1.47839 * 120.55895 * 180.02562 * 5 4 3 7 7 O 1.21552 * 120.00147 * 28.09079 * 6 5 4 8 8 N 1.34780 * 119.99829 * 208.09207 * 6 5 4 9 9 C 1.46919 * 120.63046 * 5.87774 * 8 6 5 10 10 C 1.53188 * 108.77595 * 126.41482 * 9 8 6 11 11 C 1.53037 * 109.31089 * 54.63360 * 10 9 8 12 12 C 1.53033 * 109.53990 * 298.63305 * 11 10 9 13 13 C 1.46918 * 120.62977 * 185.90177 * 8 6 5 14 14 H 1.09002 * 109.59108 * 113.65321 * 13 8 6 15 15 C 1.53006 * 109.58910 * 353.37131 * 13 8 6 16 16 H 1.09007 * 110.88532 * 50.60789 * 15 13 8 17 17 C 1.55154 * 111.00435 * 286.68299 * 15 13 8 18 18 C 1.54325 * 102.94335 * 206.41934 * 17 15 13 19 19 N 1.47021 * 107.26837 * 22.19405 * 18 17 15 20 20 C 1.36940 * 125.64692 * 181.09376 * 19 18 17 21 21 H 1.08005 * 119.99850 * 179.97438 * 20 19 18 22 22 C 1.38808 * 120.00103 * 359.95894 * 20 19 18 23 23 N 1.31618 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99964 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46905 * 59.99985 * 24 22 20 26 26 H 1.48504 * 109.46856 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46915 * 299.99692 * 24 22 20 28 28 C 1.47424 * 108.70690 * 1.05742 * 19 18 17 29 29 C 1.39516 * 118.87745 * 0.26945 * 5 4 3 30 30 N 1.31690 * 120.57008 * 359.45282 * 29 5 4 31 31 H 1.08995 * 109.47017 * 90.00434 * 1 2 3 32 32 H 1.09009 * 109.46834 * 209.99945 * 1 2 3 33 33 H 1.08993 * 109.47005 * 330.00057 * 1 2 3 34 34 H 1.08006 * 120.34486 * 0.02562 * 3 2 1 35 35 H 1.08008 * 120.85290 * 180.02562 * 4 3 2 36 36 H 1.09003 * 109.58974 * 246.20692 * 9 8 6 37 37 H 1.09006 * 109.58925 * 6.48209 * 9 8 6 38 38 H 1.09005 * 109.49662 * 174.58387 * 10 9 8 39 39 H 1.08998 * 109.50195 * 294.64955 * 10 9 8 40 40 H 1.09005 * 109.46136 * 58.66006 * 11 10 9 41 41 H 1.09002 * 109.45890 * 178.61189 * 11 10 9 42 42 H 1.08994 * 109.50181 * 301.41863 * 12 11 10 43 43 H 1.09004 * 109.50129 * 181.31429 * 12 11 10 44 44 H 1.08999 * 110.72252 * 324.78510 * 17 15 13 45 45 H 1.09001 * 110.71666 * 88.05929 * 17 15 13 46 46 H 1.08998 * 109.88497 * 262.77926 * 18 17 15 47 47 H 1.08993 * 110.01110 * 141.68291 * 18 17 15 48 48 H 0.96995 * 120.00357 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.37208 * 217.03589 * 28 19 18 50 50 H 1.08999 * 110.45960 * 94.75480 * 28 19 18 51 51 H 1.07999 * 119.71388 * 179.73253 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2313 -0.0340 0.0005 6 6 5.7083 -0.0966 0.0016 7 8 6.3545 0.8053 0.4982 8 7 6.3384 -1.1537 -0.5480 9 6 5.5797 -2.1878 -1.2646 10 6 6.1857 -2.3658 -2.6602 11 6 7.6815 -2.6615 -2.5285 12 6 8.3782 -1.4820 -1.8463 13 6 7.7970 -1.2940 -0.4414 14 1 8.0368 -2.1608 0.1745 15 6 8.3886 -0.0340 0.1939 16 1 7.8636 0.2200 1.1149 17 6 8.3690 1.1537 -0.8041 18 6 9.5365 2.0361 -0.3143 19 7 10.4419 1.1727 0.4579 20 6 11.5911 1.5777 1.0830 21 1 12.1899 0.8632 1.6282 22 6 11.9864 2.9066 1.0155 23 7 11.2570 3.7773 0.3504 24 14 13.5543 3.4590 1.8676 25 1 14.7102 2.7121 1.3098 26 1 13.7521 4.9140 1.6456 27 1 13.4473 3.1901 3.3241 28 6 9.9074 -0.2012 0.4487 29 6 3.4716 -1.2042 -0.0058 30 7 2.1559 -1.1487 -0.0008 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.6443 2.1381 0.0004 35 1 4.1274 2.1265 0.0010 36 1 5.6385 -3.1289 -0.7179 37 1 4.5374 -1.8811 -1.3528 38 1 5.6940 -3.1961 -3.1671 39 1 6.0445 -1.4521 -3.2375 40 1 7.8224 -3.5619 -1.9305 41 1 8.1103 -2.8130 -3.5191 42 1 8.2168 -0.5764 -2.4309 43 1 9.4471 -1.6832 -1.7738 44 1 8.5489 0.8058 -1.8213 45 1 7.4245 1.6943 -0.7416 46 1 9.1557 2.8359 0.3208 47 1 10.0665 2.4605 -1.1669 48 1 11.5331 4.7059 0.3036 49 1 10.0798 -0.6819 1.4116 50 1 10.3646 -0.7825 -0.3520 51 1 3.9669 -2.1639 -0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039192303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:12 Heat of formation + Delta-G solvation = 74.187596 kcal Electronic energy + Delta-G solvation = -31415.420632 eV Core-core repulsion = 27510.246919 eV Total energy + Delta-G solvation = -3905.173713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30829 -39.94682 -37.45687 -36.86579 -33.98087 -32.89812 -32.69797 -32.38470 -30.92965 -28.76391 -28.31410 -27.42063 -25.37099 -24.42584 -23.87174 -23.35449 -22.44368 -21.08312 -20.26157 -19.79518 -18.74825 -17.35596 -16.85312 -16.64401 -16.22516 -15.66141 -15.32957 -15.16000 -14.74745 -14.66929 -14.42659 -14.27255 -13.84676 -13.73315 -13.48507 -13.35830 -13.21710 -12.75172 -12.66344 -12.59551 -12.39123 -12.19388 -12.11789 -11.71132 -11.49763 -11.24379 -10.98964 -10.90902 -10.72416 -10.55412 -10.52737 -10.14007 -10.02602 -9.93835 -9.85221 -9.61685 -9.57834 -9.45460 -9.06497 -8.79699 -8.39345 -8.26541 -6.62778 -5.55359 -2.87904 0.48001 0.96836 2.76284 2.92511 3.48483 3.51947 3.53716 3.56026 3.90355 4.34144 4.41153 4.55724 4.62113 4.65493 4.70939 4.77171 4.87103 5.04243 5.06506 5.20314 5.22015 5.23932 5.24727 5.34347 5.39864 5.50954 5.62523 5.63079 5.65601 5.77043 5.81057 5.83927 5.89829 5.90081 6.00806 6.06648 6.14317 6.22240 6.27774 6.32282 6.47764 6.64148 6.69791 6.82632 6.97873 7.08954 7.36130 7.46172 7.60413 7.72837 7.91383 8.04392 8.31404 8.44534 9.38681 9.99841 10.68366 11.55753 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.003037 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.234686 B = 9218.363846 C =10605.609011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.140 3.860 3 C -0.178 4.178 4 C -0.017 4.017 5 C -0.184 4.184 6 C 0.547 3.453 7 O -0.489 6.489 8 N -0.600 5.600 9 C 0.084 3.916 10 C -0.134 4.134 11 C -0.120 4.120 12 C -0.140 4.140 13 C 0.162 3.838 14 H 0.071 0.929 15 C -0.100 4.100 16 H 0.111 0.889 17 C -0.134 4.134 18 C 0.182 3.818 19 N -0.603 5.603 20 C -0.224 4.224 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.135 3.865 29 C 0.119 3.881 30 N -0.490 5.490 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.033 0.967 48 H 0.250 0.750 49 H 0.031 0.969 50 H 0.014 0.986 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.662 -13.053 -5.974 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.003 3.997 3 C -0.198 4.198 4 C -0.043 4.043 5 C -0.189 4.189 6 C 0.335 3.665 7 O -0.365 6.365 8 N -0.333 5.333 9 C -0.039 4.039 10 C -0.172 4.172 11 C -0.157 4.157 12 C -0.178 4.178 13 C 0.060 3.940 14 H 0.089 0.911 15 C -0.119 4.119 16 H 0.129 0.871 17 C -0.172 4.172 18 C 0.058 3.942 19 N -0.329 5.329 20 C -0.353 4.353 21 H 0.092 0.908 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.008 3.992 29 C -0.039 4.039 30 N -0.200 5.200 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.049 0.951 50 H 0.031 0.969 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.659 -13.115 -5.668 25.947 hybrid contribution 1.434 1.062 0.330 1.815 sum -20.225 -12.053 -5.338 24.142 Atomic orbital electron populations 1.20766 0.88589 1.03716 1.03280 1.21510 0.97244 0.88422 0.92573 1.21964 0.94557 0.99542 1.03703 1.21756 0.94058 0.98012 0.90503 1.21160 0.95291 0.95421 1.07030 1.18082 0.86188 0.82281 0.79948 1.90902 1.64639 1.36543 1.44419 1.47922 1.07930 1.22973 1.54519 1.22461 0.96802 0.91543 0.93055 1.21915 0.96708 1.02238 0.96348 1.21543 0.94728 0.98563 1.00892 1.22209 1.00537 0.98888 0.96158 1.21267 0.77127 0.99435 0.96219 0.91117 1.22986 0.95636 0.92205 1.01117 0.87120 1.23238 1.00345 0.97111 0.96500 1.21068 0.87324 0.91274 0.94573 1.44436 1.24991 1.02771 1.60710 1.19015 0.97840 0.93079 1.25366 0.90760 1.24789 0.98983 0.96065 1.00847 1.69995 1.38641 1.02461 1.45810 0.86233 0.83065 0.77459 0.79208 1.21326 1.21703 1.21300 1.21679 0.91422 0.88765 0.97320 1.23522 0.89318 0.98285 0.92726 1.67586 1.09519 1.29134 1.13723 0.90126 0.90276 0.90478 0.84153 0.83494 0.90955 0.88411 0.90920 0.91457 0.91970 0.91810 0.90245 0.90115 0.93345 0.90911 0.94048 0.94834 0.93951 0.95089 0.96886 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.01 0.37 -0.27 16 2 C 0.14 1.30 6.78 -82.51 -0.56 0.74 16 3 C -0.18 -1.62 9.72 -39.50 -0.38 -2.00 16 4 C -0.02 -0.19 9.73 -38.87 -0.38 -0.57 16 5 C -0.18 -2.23 5.52 -104.82 -0.58 -2.81 16 6 C 0.55 7.96 7.17 -12.33 -0.09 7.88 16 7 O -0.49 -9.07 9.90 5.32 0.05 -9.02 16 8 N -0.60 -7.55 2.97 -166.33 -0.49 -8.05 16 9 C 0.08 0.75 4.72 -3.72 -0.02 0.73 16 10 C -0.13 -1.14 6.08 -26.61 -0.16 -1.31 16 11 C -0.12 -1.16 5.88 -26.70 -0.16 -1.31 16 12 C -0.14 -1.83 4.69 -26.61 -0.12 -1.96 16 13 C 0.16 2.32 2.77 -67.60 -0.19 2.13 16 14 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 15 C -0.10 -1.92 2.11 -88.47 -0.19 -2.11 16 16 H 0.11 2.40 5.73 -53.13 -0.30 2.09 16 17 C -0.13 -2.82 5.43 -24.90 -0.14 -2.95 16 18 C 0.18 4.86 5.38 -3.06 -0.02 4.84 16 19 N -0.60 -16.56 3.39 -170.08 -0.58 -17.14 16 20 C -0.22 -6.64 10.28 -15.06 -0.15 -6.79 16 21 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -28.67 10.31 55.49 0.57 -28.10 16 24 Si 0.91 23.16 29.55 -169.99 -5.02 18.13 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 C 0.14 2.98 6.62 -2.53 -0.02 2.96 16 29 C 0.12 1.24 8.63 -17.14 -0.15 1.10 16 30 N -0.49 -5.23 10.25 -9.14 -0.09 -5.33 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.15 1.68 7.96 -52.48 -0.42 1.26 16 36 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 37 H 0.10 0.81 3.99 -51.93 -0.21 0.60 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.17 5.60 -51.93 -0.29 0.88 16 43 H 0.08 1.12 6.66 -51.93 -0.35 0.78 16 44 H 0.05 0.95 5.23 -51.93 -0.27 0.68 16 45 H 0.07 1.55 5.79 -51.93 -0.30 1.25 16 46 H 0.04 1.24 7.38 -51.93 -0.38 0.86 16 47 H 0.03 0.98 7.50 -51.93 -0.39 0.59 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.01 0.28 6.36 -51.93 -0.33 -0.05 16 51 H 0.17 1.45 5.23 -52.49 -0.27 1.18 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -34.98 377.71 -10.60 -45.58 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.70 Total: 0.36 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.02 Total: -2.13 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.59 Total: -58.61 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.05 Total: -9.02 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.98 -10.60 -45.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039192303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.766 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds