Wall clock time and date at job start Wed Apr 1 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38631 * 120.47323 * 2 1 4 4 C 1.38583 * 118.48798 * 180.28261 * 3 2 1 5 5 C 1.38599 * 119.35065 * 359.73236 * 4 3 2 6 6 N 1.31495 * 120.90298 * 359.97438 * 5 4 3 7 7 C 1.32741 * 121.64512 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72527 * 179.97438 * 7 6 5 9 9 O 1.21517 * 119.99780 * 104.28534 * 8 7 6 10 10 N 1.34772 * 120.00015 * 284.28197 * 8 7 6 11 11 C 1.46965 * 120.65490 * 4.64141 * 10 8 7 12 12 C 1.53195 * 108.88892 * 126.45883 * 11 10 8 13 13 C 1.53038 * 109.30975 * 54.55778 * 12 11 10 14 14 C 1.53039 * 109.53969 * 298.63302 * 13 12 11 15 15 C 1.46925 * 120.63091 * 184.45269 * 10 8 7 16 16 H 1.09001 * 109.58517 * 113.68141 * 15 10 8 17 17 C 1.52993 * 109.58682 * 353.40122 * 15 10 8 18 18 H 1.09004 * 110.64548 * 51.32077 * 17 15 10 19 19 C 1.55155 * 110.72531 * 287.98531 * 17 15 10 20 20 C 1.55119 * 101.48915 * 205.96885 * 19 17 15 21 21 N 1.47419 * 104.72383 * 37.29568 * 20 19 17 22 22 C 1.36938 * 125.65222 * 155.81931 * 21 20 19 23 23 H 1.08005 * 120.00285 * 179.69190 * 22 21 20 24 24 C 1.38817 * 119.99778 * 359.68813 * 22 21 20 25 25 N 1.31613 * 120.00129 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99970 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47104 * 89.99732 * 26 24 22 28 28 H 1.48497 * 109.47434 * 209.99911 * 26 24 22 29 29 H 1.48499 * 109.47197 * 330.00270 * 26 24 22 30 30 C 1.47025 * 108.70310 * 335.54998 * 21 20 19 31 31 H 1.08996 * 109.47444 * 265.11720 * 1 2 3 32 32 H 1.09003 * 109.46585 * 25.11807 * 1 2 3 33 33 H 1.08999 * 109.47543 * 145.11268 * 1 2 3 34 34 H 1.07998 * 120.75735 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.32375 * 179.74761 * 4 3 2 36 36 H 1.08004 * 119.54996 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.59329 * 6.60045 * 11 10 8 38 38 H 1.08997 * 109.58777 * 246.31568 * 11 10 8 39 39 H 1.09002 * 109.49614 * 294.60854 * 12 11 10 40 40 H 1.09002 * 109.52447 * 174.52450 * 12 11 10 41 41 H 1.09004 * 109.45576 * 178.61276 * 13 12 11 42 42 H 1.09000 * 109.44952 * 58.65160 * 13 12 11 43 43 H 1.08996 * 109.49809 * 301.41741 * 14 13 12 44 44 H 1.09000 * 109.52389 * 181.33269 * 14 13 12 45 45 H 1.09005 * 111.00082 * 324.21500 * 19 17 15 46 46 H 1.09002 * 111.00352 * 88.01467 * 19 17 15 47 47 H 1.09000 * 110.49714 * 278.44998 * 20 19 17 48 48 H 1.09009 * 110.34210 * 156.05664 * 20 19 17 49 49 H 0.96998 * 120.00397 * 179.97438 * 25 24 22 50 50 H 1.09005 * 109.88235 * 120.70553 * 30 21 20 51 51 H 1.08998 * 109.88558 * 241.87463 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1468 -0.0060 5 6 4.2321 -0.0841 -0.0062 6 7 3.5406 -1.2025 -0.0002 7 6 2.2132 -1.2005 0.0057 8 6 1.4766 -2.4861 0.0117 9 8 0.9537 -2.8819 1.0348 10 7 1.3864 -3.2163 -1.1174 11 6 2.0971 -2.8033 -2.3357 12 6 2.9508 -3.9741 -2.8328 13 6 2.0631 -5.2080 -3.0107 14 6 1.4495 -5.5956 -1.6633 15 6 0.5788 -4.4432 -1.1529 16 1 -0.2702 -4.3026 -1.8219 17 6 0.0744 -4.7662 0.2549 18 1 -0.4090 -3.8959 0.6990 19 6 1.2354 -5.2712 1.1518 20 6 0.4716 -6.1375 2.1873 21 7 -0.5995 -6.7901 1.4125 22 6 -1.2248 -7.9620 1.7453 23 1 -2.0048 -8.3569 1.1112 24 6 -0.8562 -8.6424 2.8978 25 7 0.0940 -8.1609 3.6708 26 14 -1.7087 -10.2414 3.3515 27 1 -0.9781 -11.3819 2.7424 28 1 -1.7215 -10.3938 4.8285 29 1 -3.1041 -10.2197 2.8439 30 6 -0.8897 -5.9709 0.2266 31 1 -0.3634 -0.0875 1.0239 32 1 -0.3632 0.9305 -0.4363 33 1 -0.3634 -0.8429 -0.5878 34 1 1.6903 2.1415 -0.0004 35 1 4.1723 2.0597 -0.0103 36 1 5.3114 -0.1252 -0.0112 37 1 2.7395 -1.9514 -2.1130 38 1 1.3750 -2.5256 -3.1035 39 1 3.7320 -4.1900 -2.1040 40 1 3.4064 -3.7130 -3.7880 41 1 2.6636 -6.0359 -3.3879 42 1 1.2674 -4.9834 -3.7210 43 1 2.2449 -5.7962 -0.9456 44 1 0.8362 -6.4884 -1.7857 45 1 1.9395 -5.8731 0.5772 46 1 1.7432 -4.4388 1.6391 47 1 0.0453 -5.5098 2.9698 48 1 1.1364 -6.8854 2.6197 49 1 0.3514 -8.6361 4.4762 50 1 -0.7247 -6.5565 -0.6779 51 1 -1.9214 -5.6210 0.2611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039202140.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:27 Heat of formation + Delta-G solvation = 61.352667 kcal Electronic energy + Delta-G solvation = -31898.066729 eV Core-core repulsion = 27992.336452 eV Total energy + Delta-G solvation = -3905.730277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20887 -39.87711 -37.35248 -36.70950 -33.89937 -33.30614 -32.75216 -31.95660 -30.81714 -28.70647 -27.79531 -27.29686 -25.59567 -24.22853 -24.20454 -22.96041 -22.37723 -21.09936 -20.28615 -19.59588 -18.77670 -17.29664 -16.95720 -16.72996 -16.00184 -15.78726 -15.14287 -14.96857 -14.63954 -14.54135 -14.33653 -14.28896 -13.85297 -13.62553 -13.44467 -13.40071 -13.11457 -12.92941 -12.76127 -12.62749 -12.38005 -12.06090 -11.98665 -11.53809 -11.38834 -11.08724 -11.01220 -10.87107 -10.71605 -10.54238 -10.45976 -10.11128 -10.03781 -9.91404 -9.82742 -9.57243 -9.53301 -9.27055 -9.18667 -8.67254 -8.43533 -8.21438 -6.61585 -5.46918 -2.88651 0.66254 0.96534 2.56673 2.95176 3.45036 3.48623 3.52928 3.55552 4.07166 4.38858 4.47784 4.62352 4.66625 4.69075 4.74434 4.88752 4.92888 5.06515 5.14409 5.23098 5.32269 5.34375 5.38279 5.41244 5.48932 5.58766 5.66920 5.73130 5.75744 5.83751 5.88538 5.90262 5.94183 5.97762 6.06729 6.17715 6.20755 6.27588 6.33508 6.39831 6.56294 6.68460 6.78228 6.92522 7.08660 7.19602 7.38033 7.47781 7.62672 7.77025 7.88951 8.09561 8.31450 8.57564 9.40485 10.02133 10.70110 11.55503 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.003203 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.710388 B = 8740.730288 C = 9532.607369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.079 4.079 4 C -0.161 4.161 5 C 0.093 3.907 6 N -0.453 5.453 7 C 0.100 3.900 8 C 0.565 3.435 9 O -0.485 6.485 10 N -0.593 5.593 11 C 0.113 3.887 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.139 4.139 15 C 0.161 3.839 16 H 0.069 0.931 17 C -0.099 4.099 18 H 0.107 0.893 19 C -0.134 4.134 20 C 0.156 3.844 21 N -0.603 5.603 22 C -0.218 4.218 23 H 0.074 0.926 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 C 0.136 3.864 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.007 0.993 48 H 0.099 0.901 49 H 0.249 0.751 50 H 0.019 0.981 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 20.939 -15.331 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.103 4.103 3 C -0.105 4.105 4 C -0.181 4.181 5 C -0.066 4.066 6 N -0.163 5.163 7 C -0.040 4.040 8 C 0.350 3.650 9 O -0.359 6.359 10 N -0.326 5.326 11 C -0.011 4.011 12 C -0.170 4.170 13 C -0.157 4.157 14 C -0.177 4.177 15 C 0.059 3.941 16 H 0.087 0.913 17 C -0.118 4.118 18 H 0.125 0.875 19 C -0.172 4.172 20 C 0.031 3.969 21 N -0.329 5.329 22 C -0.347 4.347 23 H 0.092 0.908 24 C -0.209 4.209 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 C 0.010 3.990 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.025 0.975 48 H 0.117 0.883 49 H 0.060 0.940 50 H 0.037 0.963 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 7.828 19.732 -14.603 25.766 hybrid contribution -0.712 0.128 0.215 0.754 sum 7.116 19.860 -14.388 25.536 Atomic orbital electron populations 1.20809 0.89600 1.03088 1.03763 1.20840 0.97835 0.92676 0.98994 1.21466 0.94182 0.97859 0.96947 1.22291 0.95219 0.99758 1.00806 1.22825 1.00452 0.87377 0.95960 1.67727 1.06665 1.31539 1.10386 1.21213 0.90285 0.93827 0.98659 1.17898 0.80705 0.82555 0.83796 1.90905 1.45204 1.67809 1.31933 1.47959 1.48817 1.25104 1.10714 1.21658 0.95218 0.97669 0.86507 1.21874 0.98515 0.95308 1.01281 1.21543 0.98959 0.97388 0.97772 1.22180 1.00715 0.98265 0.96499 1.21310 0.91686 0.82295 0.98795 0.91271 1.22810 0.98113 0.98878 0.92000 0.87545 1.23409 0.96547 0.98881 0.98366 1.21901 0.90131 0.94056 0.90764 1.44512 1.42138 1.23039 1.23176 1.19079 1.13879 0.96470 1.05230 0.90776 1.24776 0.99420 0.99229 0.97508 1.69854 1.32289 1.39250 1.15548 0.86118 0.78767 0.83521 0.77381 1.21776 1.21790 1.20884 1.21422 0.95406 0.91097 0.91120 0.89804 0.90959 0.91023 0.84347 0.84464 0.82250 0.90337 0.91764 0.91073 0.91184 0.91762 0.92162 0.90075 0.90008 0.92888 0.90969 0.97459 0.88287 0.93979 0.96344 0.96850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.55 36.00 0.34 -0.77 16 2 C -0.10 -1.09 5.93 -104.09 -0.62 -1.71 16 3 C -0.08 -0.64 9.84 -39.31 -0.39 -1.03 16 4 C -0.16 -1.19 10.11 -39.32 -0.40 -1.59 16 5 C 0.09 0.86 11.18 -17.56 -0.20 0.66 16 6 N -0.45 -5.84 9.55 -9.80 -0.09 -5.93 16 7 C 0.10 1.34 4.86 -83.01 -0.40 0.93 16 8 C 0.57 8.87 5.51 -12.18 -0.07 8.81 16 9 O -0.49 -9.39 10.24 5.35 0.05 -9.33 16 10 N -0.59 -8.23 2.97 -166.18 -0.49 -8.73 16 11 C 0.11 1.21 6.32 -3.69 -0.02 1.18 16 12 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 13 C -0.12 -1.31 5.88 -26.69 -0.16 -1.47 16 14 C -0.14 -2.03 4.74 -26.61 -0.13 -2.16 16 15 C 0.16 2.47 2.68 -67.60 -0.18 2.29 16 16 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.10 -1.96 2.04 -88.79 -0.18 -2.14 16 18 H 0.11 2.26 5.73 -53.15 -0.30 1.95 16 19 C -0.13 -2.98 5.50 -24.47 -0.13 -3.12 16 20 C 0.16 4.25 5.91 -2.42 -0.01 4.24 16 21 N -0.60 -16.68 3.39 -169.93 -0.58 -17.26 16 22 C -0.22 -6.44 10.27 -15.06 -0.15 -6.59 16 23 H 0.07 2.10 7.83 -52.48 -0.41 1.69 16 24 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 25 N -0.92 -28.55 10.08 55.49 0.56 -27.99 16 26 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 30 C 0.14 3.08 6.68 -3.06 -0.02 3.06 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.49 8.07 -51.93 -0.42 0.08 16 33 H 0.07 0.76 7.29 -51.93 -0.38 0.38 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 36 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.08 0.84 5.83 -51.93 -0.30 0.54 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.36 5.60 -51.93 -0.29 1.07 16 44 H 0.08 1.28 6.67 -51.93 -0.35 0.94 16 45 H 0.05 1.16 5.28 -51.93 -0.27 0.88 16 46 H 0.07 1.66 5.73 -51.93 -0.30 1.36 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.10 2.99 5.86 -51.92 -0.30 2.69 16 49 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.02 0.40 6.27 -51.93 -0.33 0.08 16 51 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -34.98 381.59 -10.66 -45.64 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.86 Total: 1.15 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.97 Total: -1.41 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.60 Total: -59.91 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.05 Total: -9.33 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.98 -10.66 -45.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039202140.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.995 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds