Wall clock time and date at job start Wed Apr 1 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38636 * 120.46802 * 2 1 4 4 C 1.38583 * 118.48911 * 179.97438 * 3 2 1 5 5 C 1.38609 * 119.34893 * 0.02562 * 4 3 2 6 6 N 1.31497 * 120.90235 * 359.72169 * 5 4 3 7 7 C 1.32743 * 121.64096 * 0.56486 * 6 5 4 8 8 C 1.48163 * 119.72211 * 179.70902 * 7 6 5 9 9 O 1.21524 * 120.00089 * 103.66708 * 8 7 6 10 10 N 1.34778 * 120.00382 * 283.66312 * 8 7 6 11 11 C 1.46924 * 120.62747 * 6.34122 * 10 8 7 12 12 C 1.53188 * 108.77732 * 126.38887 * 11 10 8 13 13 C 1.53041 * 109.31585 * 54.63453 * 12 11 10 14 14 C 1.53044 * 109.53491 * 298.63526 * 13 12 11 15 15 C 1.46930 * 120.63087 * 186.33325 * 10 8 7 16 16 H 1.08995 * 109.69816 * 113.75922 * 15 10 8 17 17 C 1.52990 * 109.58882 * 353.39940 * 15 10 8 18 18 H 1.09006 * 110.88703 * 313.57193 * 17 15 10 19 19 C 1.55159 * 111.03965 * 77.47770 * 17 15 10 20 20 C 1.54322 * 102.94281 * 153.59146 * 19 17 15 21 21 N 1.47018 * 107.27106 * 337.80555 * 20 19 17 22 22 C 1.36937 * 125.64544 * 179.20655 * 21 20 19 23 23 H 1.08005 * 119.99939 * 179.68901 * 22 21 20 24 24 C 1.38815 * 120.00362 * 359.69652 * 22 21 20 25 25 N 1.31624 * 119.99620 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00198 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47361 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47056 * 119.99656 * 26 24 22 29 29 H 1.48501 * 109.46959 * 239.99617 * 26 24 22 30 30 C 1.47424 * 108.70503 * 358.94293 * 21 20 19 31 31 H 1.09007 * 109.46953 * 264.67797 * 1 2 3 32 32 H 1.08994 * 109.47509 * 24.68437 * 1 2 3 33 33 H 1.09003 * 109.46948 * 144.68143 * 1 2 3 34 34 H 1.07998 * 120.75308 * 359.95611 * 3 2 1 35 35 H 1.07994 * 120.32710 * 179.97438 * 4 3 2 36 36 H 1.07999 * 119.54784 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.58666 * 6.59303 * 11 10 8 38 38 H 1.09005 * 109.70163 * 246.24517 * 11 10 8 39 39 H 1.09001 * 109.49775 * 294.67652 * 12 11 10 40 40 H 1.09006 * 109.49563 * 174.58186 * 12 11 10 41 41 H 1.08996 * 109.46233 * 178.61745 * 13 12 11 42 42 H 1.08996 * 109.45887 * 58.65049 * 13 12 11 43 43 H 1.09005 * 109.49668 * 301.41439 * 14 13 12 44 44 H 1.09000 * 109.52298 * 181.33074 * 14 13 12 45 45 H 1.09007 * 110.71705 * 271.95325 * 19 17 15 46 46 H 1.09002 * 110.72096 * 35.04624 * 19 17 15 47 47 H 1.09001 * 109.88010 * 218.38916 * 20 19 17 48 48 H 1.09001 * 109.88389 * 97.22652 * 20 19 17 49 49 H 0.96997 * 119.99472 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.36737 * 142.96466 * 30 21 20 51 51 H 1.09002 * 110.36611 * 265.28799 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1471 0.0005 5 6 4.2322 -0.0839 0.0005 6 7 3.5407 -1.2023 0.0055 7 6 2.2133 -1.2003 -0.0005 8 6 1.4768 -2.4860 -0.0010 9 8 0.9544 -2.8874 1.0201 10 7 1.3861 -3.2102 -1.1341 11 6 2.1257 -2.8107 -2.3390 12 6 2.9583 -4.0015 -2.8241 13 6 2.0433 -5.2124 -3.0209 14 6 1.3962 -5.5872 -1.6856 15 6 0.5458 -4.4143 -1.1876 16 1 -0.2872 -4.2509 -1.8712 17 6 0.0085 -4.7274 0.2102 18 1 0.8027 -4.6667 0.9544 19 6 -1.1705 -3.7879 0.5771 20 6 -1.9775 -4.6258 1.5911 21 7 -1.6348 -6.0370 1.3620 22 6 -2.1272 -7.1025 2.0674 23 1 -1.8158 -8.1060 1.8174 24 6 -3.0268 -6.8929 3.1036 25 7 -3.4061 -5.6699 3.4085 26 14 -3.6990 -8.3464 4.0653 27 1 -3.1209 -9.6047 3.5291 28 1 -3.3334 -8.2040 5.4974 29 1 -5.1776 -8.3859 3.9334 30 6 -0.6782 -6.1156 0.2431 31 1 -0.3633 -0.0953 1.0233 32 1 -0.3634 0.9337 -0.4291 33 1 -0.3633 -0.8386 -0.5941 34 1 1.6900 2.1415 -0.0007 35 1 4.1721 2.0598 0.0001 36 1 5.3114 -0.1249 0.0014 37 1 2.7852 -1.9756 -2.1029 38 1 1.4246 -2.5133 -3.1189 39 1 3.7209 -4.2385 -2.0821 40 1 3.4368 -3.7495 -3.7705 41 1 2.6292 -6.0543 -3.3895 42 1 1.2662 -4.9664 -3.7445 43 1 2.1735 -5.8093 -0.9543 44 1 0.7630 -6.4640 -1.8211 45 1 -0.8038 -2.8714 1.0394 46 1 -1.7708 -3.5604 -0.3037 47 1 -3.0449 -4.4730 1.4320 48 1 -1.7073 -4.3390 2.6074 49 1 -4.0344 -5.5235 4.1328 50 1 0.0575 -6.8985 0.4272 51 1 -1.2042 -6.3009 -0.6935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039202141.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:31 Heat of formation + Delta-G solvation = 54.935469 kcal Electronic energy + Delta-G solvation = -31852.980027 eV Core-core repulsion = 27946.971479 eV Total energy + Delta-G solvation = -3906.008548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.18220 -39.81833 -37.31047 -36.79736 -33.86128 -33.27752 -32.80199 -31.92653 -30.95576 -28.97290 -27.68044 -27.15715 -25.59381 -24.37987 -24.12063 -22.79027 -22.35403 -21.14444 -19.75422 -19.59288 -19.54842 -17.38603 -16.87970 -16.64658 -16.23084 -15.89148 -15.18333 -14.84030 -14.59128 -14.46889 -14.31314 -14.00328 -13.92132 -13.65887 -13.45812 -13.38469 -13.04673 -12.96563 -12.79314 -12.69261 -12.14317 -11.99391 -11.89770 -11.81587 -11.59164 -11.21090 -11.04166 -10.84940 -10.77159 -10.65233 -10.59077 -10.09009 -10.00211 -9.90911 -9.82588 -9.56974 -9.50869 -9.41437 -9.14386 -8.73377 -8.42438 -8.27097 -6.61718 -5.54043 -2.86495 0.68501 0.98541 2.58889 2.93182 3.46658 3.49011 3.53757 3.56665 4.07887 4.42310 4.50660 4.63307 4.67734 4.69416 4.73551 4.84188 4.86271 5.05353 5.09846 5.24394 5.27937 5.34543 5.41494 5.47005 5.50694 5.62189 5.65155 5.67168 5.78108 5.81413 5.82686 5.92674 5.94678 5.97090 6.07336 6.10172 6.15441 6.19246 6.33611 6.36882 6.44325 6.55229 6.68601 6.83231 6.98378 7.12410 7.38098 7.47268 7.62959 7.75029 7.92922 8.06012 8.32565 8.45895 9.40137 10.01290 10.69759 11.57262 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.003404 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.975069 B = 8223.712192 C = 9592.440365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 C -0.079 4.079 4 C -0.161 4.161 5 C 0.091 3.909 6 N -0.455 5.455 7 C 0.099 3.901 8 C 0.562 3.438 9 O -0.480 6.480 10 N -0.595 5.595 11 C 0.112 3.888 12 C -0.131 4.131 13 C -0.119 4.119 14 C -0.131 4.131 15 C 0.161 3.839 16 H 0.071 0.929 17 C -0.095 4.095 18 H 0.105 0.895 19 C -0.135 4.135 20 C 0.183 3.817 21 N -0.605 5.605 22 C -0.222 4.222 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.909 3.091 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C 0.139 3.861 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.034 0.966 48 H 0.043 0.957 49 H 0.249 0.751 50 H 0.033 0.967 51 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.418 15.161 -15.496 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.100 4.100 3 C -0.105 4.105 4 C -0.181 4.181 5 C -0.068 4.068 6 N -0.166 5.166 7 C -0.041 4.041 8 C 0.347 3.653 9 O -0.353 6.353 10 N -0.329 5.329 11 C -0.011 4.011 12 C -0.170 4.170 13 C -0.157 4.157 14 C -0.170 4.170 15 C 0.058 3.942 16 H 0.089 0.911 17 C -0.115 4.115 18 H 0.123 0.877 19 C -0.173 4.173 20 C 0.058 3.942 21 N -0.331 5.331 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.208 4.208 25 N -0.569 5.569 26 Si 0.740 3.260 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C 0.012 3.988 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.052 0.948 51 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 15.395 14.067 -14.744 25.540 hybrid contribution -0.677 0.227 0.484 0.862 sum 14.718 14.294 -14.260 24.986 Atomic orbital electron populations 1.20850 0.89404 1.03219 1.04018 1.20869 0.97951 0.92624 0.98584 1.21484 0.94162 0.97923 0.96883 1.22284 0.95229 0.99729 1.00826 1.22800 1.00375 0.87415 0.96207 1.67706 1.06684 1.31560 1.10604 1.21201 0.90240 0.93863 0.98768 1.17901 0.80341 0.82775 0.84239 1.90940 1.44036 1.67793 1.32491 1.47925 1.47137 1.26703 1.11126 1.21654 0.94892 0.97642 0.86948 1.21876 0.98405 0.95324 1.01363 1.21540 0.98839 0.97637 0.97696 1.22015 0.99969 0.98215 0.96755 1.21401 0.91205 0.82654 0.98896 0.91095 1.22825 0.98850 0.96101 0.93697 0.87679 1.23292 0.95393 0.99566 0.99043 1.21068 0.95697 0.81990 0.95453 1.44486 1.49738 1.03130 1.35748 1.19108 1.19785 0.86322 1.09899 0.90637 1.24794 1.00166 0.96544 0.99252 1.70022 1.36812 1.18062 1.31955 0.86077 0.78454 0.81591 0.79879 1.20611 1.21892 1.21931 1.21630 0.91565 0.94449 0.91157 0.89583 0.90923 0.90840 0.84305 0.84490 0.82316 0.90237 0.91742 0.91155 0.91117 0.91729 0.91914 0.91286 0.90083 0.89820 0.94452 0.94809 0.93870 0.94068 0.94841 0.97188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.55 36.01 0.34 -0.92 16 2 C -0.10 -1.11 5.93 -104.09 -0.62 -1.73 16 3 C -0.08 -0.67 9.83 -39.31 -0.39 -1.06 16 4 C -0.16 -1.22 10.11 -39.32 -0.40 -1.62 16 5 C 0.09 0.84 11.18 -17.56 -0.20 0.64 16 6 N -0.46 -5.82 9.51 -9.80 -0.09 -5.91 16 7 C 0.10 1.34 4.89 -83.01 -0.41 0.93 16 8 C 0.56 8.90 5.57 -12.18 -0.07 8.83 16 9 O -0.48 -9.45 10.00 5.34 0.05 -9.39 16 10 N -0.60 -8.21 2.97 -166.21 -0.49 -8.70 16 11 C 0.11 1.18 6.31 -3.71 -0.02 1.15 16 12 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 13 C -0.12 -1.18 5.88 -26.69 -0.16 -1.34 16 14 C -0.13 -1.70 4.87 -26.61 -0.13 -1.83 16 15 C 0.16 2.42 2.57 -67.60 -0.17 2.24 16 16 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 17 C -0.10 -1.88 1.90 -88.48 -0.17 -2.04 16 18 H 0.11 2.35 5.99 -51.95 -0.31 2.04 16 19 C -0.14 -2.88 5.56 -24.90 -0.14 -3.02 16 20 C 0.18 4.91 5.37 -3.07 -0.02 4.89 16 21 N -0.61 -16.78 3.39 -170.07 -0.58 -17.36 16 22 C -0.22 -6.62 10.28 -15.06 -0.15 -6.78 16 23 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 24 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 25 N -0.92 -28.76 10.31 55.49 0.57 -28.18 16 26 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 30 C 0.14 3.10 5.35 -2.53 -0.01 3.08 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.57 8.06 -51.93 -0.42 0.16 16 33 H 0.07 0.87 7.29 -51.93 -0.38 0.50 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.08 0.84 5.81 -51.93 -0.30 0.54 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.06 7.20 -51.93 -0.37 0.69 16 45 H 0.08 1.78 5.47 -52.40 -0.29 1.50 16 46 H 0.04 0.74 7.85 -51.93 -0.41 0.33 16 47 H 0.03 0.99 7.51 -51.93 -0.39 0.60 16 48 H 0.04 1.31 7.38 -51.93 -0.38 0.92 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.03 0.73 8.13 -51.93 -0.42 0.31 16 51 H 0.01 0.23 7.87 -51.93 -0.41 -0.18 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -35.48 387.55 -10.95 -46.43 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.27 Total: -0.57 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.96 Total: -0.39 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.59 Total: -60.15 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.05 Total: -9.39 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.48 -10.95 -46.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039202141.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.362 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds