Wall clock time and date at job start Wed Apr 1 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38636 * 120.46802 * 2 1 4 4 C 1.38583 * 118.48911 * 179.97438 * 3 2 1 5 5 C 1.38609 * 119.34893 * 0.02562 * 4 3 2 6 6 N 1.31497 * 120.90235 * 359.72169 * 5 4 3 7 7 C 1.32743 * 121.64096 * 0.56486 * 6 5 4 8 8 C 1.48163 * 119.72211 * 179.70902 * 7 6 5 9 9 O 1.21524 * 120.00089 * 103.66708 * 8 7 6 10 10 N 1.34778 * 120.00382 * 283.66312 * 8 7 6 11 11 C 1.46924 * 120.62747 * 6.34122 * 10 8 7 12 12 C 1.53188 * 108.77732 * 126.38887 * 11 10 8 13 13 C 1.53041 * 109.31585 * 54.63453 * 12 11 10 14 14 C 1.53044 * 109.53491 * 298.63526 * 13 12 11 15 15 C 1.46930 * 120.63087 * 186.33325 * 10 8 7 16 16 H 1.08995 * 109.69816 * 113.75922 * 15 10 8 17 17 C 1.52990 * 109.58882 * 353.39940 * 15 10 8 18 18 H 1.09006 * 110.88703 * 313.57193 * 17 15 10 19 19 C 1.55159 * 111.03965 * 77.47770 * 17 15 10 20 20 C 1.54322 * 102.94281 * 153.59146 * 19 17 15 21 21 N 1.47018 * 107.27106 * 337.80555 * 20 19 17 22 22 C 1.36937 * 125.64544 * 179.20655 * 21 20 19 23 23 H 1.08005 * 119.99939 * 179.68901 * 22 21 20 24 24 C 1.38815 * 120.00362 * 359.69652 * 22 21 20 25 25 N 1.31624 * 119.99620 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00198 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47361 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47056 * 119.99656 * 26 24 22 29 29 H 1.48501 * 109.46959 * 239.99617 * 26 24 22 30 30 C 1.47424 * 108.70503 * 358.94293 * 21 20 19 31 31 H 1.09007 * 109.46953 * 264.67797 * 1 2 3 32 32 H 1.08994 * 109.47509 * 24.68437 * 1 2 3 33 33 H 1.09003 * 109.46948 * 144.68143 * 1 2 3 34 34 H 1.07998 * 120.75308 * 359.95611 * 3 2 1 35 35 H 1.07994 * 120.32710 * 179.97438 * 4 3 2 36 36 H 1.07999 * 119.54784 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.58666 * 6.59303 * 11 10 8 38 38 H 1.09005 * 109.70163 * 246.24517 * 11 10 8 39 39 H 1.09001 * 109.49775 * 294.67652 * 12 11 10 40 40 H 1.09006 * 109.49563 * 174.58186 * 12 11 10 41 41 H 1.08996 * 109.46233 * 178.61745 * 13 12 11 42 42 H 1.08996 * 109.45887 * 58.65049 * 13 12 11 43 43 H 1.09005 * 109.49668 * 301.41439 * 14 13 12 44 44 H 1.09000 * 109.52298 * 181.33074 * 14 13 12 45 45 H 1.09007 * 110.71705 * 271.95325 * 19 17 15 46 46 H 1.09002 * 110.72096 * 35.04624 * 19 17 15 47 47 H 1.09001 * 109.88010 * 218.38916 * 20 19 17 48 48 H 1.09001 * 109.88389 * 97.22652 * 20 19 17 49 49 H 0.96997 * 119.99472 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.36737 * 142.96466 * 30 21 20 51 51 H 1.09002 * 110.36611 * 265.28799 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1471 0.0005 5 6 4.2322 -0.0839 0.0005 6 7 3.5407 -1.2023 0.0055 7 6 2.2133 -1.2003 -0.0005 8 6 1.4768 -2.4860 -0.0010 9 8 0.9544 -2.8874 1.0201 10 7 1.3861 -3.2102 -1.1341 11 6 2.1257 -2.8107 -2.3390 12 6 2.9583 -4.0015 -2.8241 13 6 2.0433 -5.2124 -3.0209 14 6 1.3962 -5.5872 -1.6856 15 6 0.5458 -4.4143 -1.1876 16 1 -0.2872 -4.2509 -1.8712 17 6 0.0085 -4.7274 0.2102 18 1 0.8027 -4.6667 0.9544 19 6 -1.1705 -3.7879 0.5771 20 6 -1.9775 -4.6258 1.5911 21 7 -1.6348 -6.0370 1.3620 22 6 -2.1272 -7.1025 2.0674 23 1 -1.8158 -8.1060 1.8174 24 6 -3.0268 -6.8929 3.1036 25 7 -3.4061 -5.6699 3.4085 26 14 -3.6990 -8.3464 4.0653 27 1 -3.1209 -9.6047 3.5291 28 1 -3.3334 -8.2040 5.4974 29 1 -5.1776 -8.3859 3.9334 30 6 -0.6782 -6.1156 0.2431 31 1 -0.3633 -0.0953 1.0233 32 1 -0.3634 0.9337 -0.4291 33 1 -0.3633 -0.8386 -0.5941 34 1 1.6900 2.1415 -0.0007 35 1 4.1721 2.0598 0.0001 36 1 5.3114 -0.1249 0.0014 37 1 2.7852 -1.9756 -2.1029 38 1 1.4246 -2.5133 -3.1189 39 1 3.7209 -4.2385 -2.0821 40 1 3.4368 -3.7495 -3.7705 41 1 2.6292 -6.0543 -3.3895 42 1 1.2662 -4.9664 -3.7445 43 1 2.1735 -5.8093 -0.9543 44 1 0.7630 -6.4640 -1.8211 45 1 -0.8038 -2.8714 1.0394 46 1 -1.7708 -3.5604 -0.3037 47 1 -3.0449 -4.4730 1.4320 48 1 -1.7073 -4.3390 2.6074 49 1 -4.0344 -5.5235 4.1328 50 1 0.0575 -6.8985 0.4272 51 1 -1.2042 -6.3009 -0.6935 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039202141.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:30 Heat of formation + Delta-G solvation = 32.629009 kcal Electronic energy + Delta-G solvation = -31853.947307 eV Core-core repulsion = 27946.971479 eV Total energy + Delta-G solvation = -3906.975828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.23497 -40.79784 -38.69411 -38.32093 -34.94004 -34.64527 -33.99369 -32.98820 -32.36809 -30.88656 -28.78610 -28.53919 -26.98156 -26.04311 -25.05424 -24.00034 -23.21007 -22.32288 -21.60411 -21.15656 -20.57403 -18.86708 -18.31256 -17.71133 -17.46273 -16.89855 -16.66880 -16.26093 -15.82200 -15.69111 -15.50224 -15.30550 -14.99317 -14.88982 -14.66878 -14.23052 -14.15187 -14.03173 -13.90406 -13.77071 -13.69143 -13.55427 -13.42048 -13.26360 -12.85283 -12.78877 -12.64017 -12.25201 -12.19010 -11.98146 -11.95011 -11.74330 -11.58877 -11.42555 -11.35070 -11.15174 -10.74586 -10.71233 -10.64531 -10.12520 -9.83873 -9.50674 -8.87390 -7.83627 -5.20360 -0.08587 0.27988 1.41941 1.45118 1.46273 1.55412 1.87588 2.49076 2.70404 3.17145 3.33368 3.59974 3.65763 3.77060 3.85277 3.88195 3.96458 4.00897 4.07765 4.09532 4.19871 4.24156 4.33960 4.39291 4.49931 4.51517 4.55145 4.62752 4.63334 4.71446 4.73915 4.75129 4.88969 4.93099 4.96147 5.06213 5.07798 5.11305 5.14673 5.19603 5.23733 5.24607 5.28516 5.44133 5.47362 5.53907 5.67149 5.73122 5.75450 5.83548 6.19689 6.36380 6.85781 7.09645 7.15936 7.78591 8.45874 9.27096 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.003404 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.975069 B = 8223.712192 C = 9592.440365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C -0.075 4.075 4 C -0.143 4.143 5 C 0.084 3.916 6 N -0.485 5.485 7 C 0.070 3.930 8 C 0.559 3.441 9 O -0.536 6.536 10 N -0.591 5.591 11 C 0.109 3.891 12 C -0.126 4.126 13 C -0.112 4.112 14 C -0.128 4.128 15 C 0.166 3.834 16 H 0.084 0.916 17 C -0.075 4.075 18 H 0.075 0.925 19 C -0.116 4.116 20 C 0.195 3.805 21 N -0.629 5.629 22 C -0.242 4.242 23 H 0.084 0.916 24 C -0.074 4.074 25 N -0.954 5.954 26 Si 0.984 3.016 27 H -0.262 1.262 28 H -0.293 1.293 29 H -0.289 1.289 30 C 0.137 3.863 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.054 0.946 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.000 1.000 48 H -0.005 1.005 49 H 0.245 0.755 50 H 0.035 0.965 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.437 16.509 -18.371 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.162 4.162 5 C -0.075 4.075 6 N -0.196 5.196 7 C -0.067 4.067 8 C 0.346 3.654 9 O -0.414 6.414 10 N -0.324 5.324 11 C -0.013 4.013 12 C -0.164 4.164 13 C -0.150 4.150 14 C -0.167 4.167 15 C 0.063 3.937 16 H 0.101 0.899 17 C -0.094 4.094 18 H 0.093 0.907 19 C -0.154 4.154 20 C 0.070 3.930 21 N -0.355 5.355 22 C -0.371 4.371 23 H 0.102 0.898 24 C -0.266 4.266 25 N -0.604 5.604 26 Si 0.812 3.188 27 H -0.186 1.186 28 H -0.220 1.220 29 H -0.216 1.216 30 C 0.011 3.989 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.189 0.811 35 H 0.196 0.804 36 H 0.205 0.795 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.018 0.982 48 H 0.013 0.987 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 17.454 15.405 -17.694 29.240 hybrid contribution -1.185 -0.094 1.372 1.816 sum 16.269 15.311 -16.321 27.667 Atomic orbital electron populations 1.20808 0.89666 1.04066 1.02598 1.20991 0.98005 0.93097 0.99259 1.21896 0.94819 0.97941 0.95421 1.22737 0.95039 1.00585 0.97871 1.23398 1.01650 0.87256 0.95205 1.67626 1.06423 1.33699 1.11871 1.20854 0.90860 0.93136 1.01891 1.18419 0.79667 0.83555 0.83766 1.90897 1.46765 1.69379 1.34322 1.48034 1.46658 1.25755 1.11927 1.21911 0.95255 0.98314 0.85796 1.21863 0.97735 0.94469 1.02319 1.21518 0.99314 0.98441 0.95716 1.21979 0.99253 0.97119 0.98314 1.21240 0.92374 0.84407 0.95679 0.89858 1.22519 0.97040 0.93669 0.96167 0.90736 1.23104 0.95390 0.98965 0.97944 1.20761 0.94483 0.83134 0.94615 1.44843 1.50762 1.02884 1.37008 1.19567 1.19885 0.87305 1.10380 0.89834 1.25780 1.00766 0.99569 1.00510 1.70280 1.37320 1.20419 1.32334 0.84926 0.77531 0.78630 0.77749 1.18650 1.22048 1.21563 1.21823 0.90846 0.96211 0.89990 0.91729 0.87806 0.92661 0.81099 0.80373 0.79523 0.90070 0.89624 0.92756 0.87996 0.90112 0.90342 0.93044 0.90148 0.89829 0.92746 0.98189 0.98707 0.94605 0.94630 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.55 71.24 0.68 -1.78 16 2 C -0.11 -2.42 5.93 -19.52 -0.12 -2.54 16 3 C -0.08 -1.05 9.83 22.45 0.22 -0.83 16 4 C -0.14 -1.60 10.11 22.44 0.23 -1.37 16 5 C 0.08 1.33 11.18 84.83 0.95 2.28 16 6 N -0.49 -12.04 9.51 -184.91 -1.76 -13.80 16 7 C 0.07 1.92 4.89 41.89 0.20 2.13 16 8 C 0.56 18.43 5.57 86.88 0.48 18.92 16 9 O -0.54 -22.79 10.00 -3.79 -0.04 -22.83 16 10 N -0.59 -16.24 2.97 -798.05 -2.37 -18.61 16 11 C 0.11 2.07 6.31 86.36 0.55 2.62 16 12 C -0.13 -2.02 6.08 30.67 0.19 -1.83 16 13 C -0.11 -1.90 5.88 30.62 0.18 -1.72 16 14 C -0.13 -3.20 4.87 30.67 0.15 -3.06 16 15 C 0.17 4.95 2.57 44.97 0.12 5.07 16 16 H 0.08 2.32 7.88 -2.39 -0.02 2.30 16 17 C -0.07 -3.06 1.90 -9.40 -0.02 -3.08 16 18 H 0.07 3.59 5.99 -4.30 -0.03 3.56 16 19 C -0.12 -5.26 5.56 31.78 0.18 -5.09 16 20 C 0.20 11.30 5.37 86.73 0.47 11.77 16 21 N -0.63 -36.60 3.39 -691.99 -2.35 -38.95 16 22 C -0.24 -14.92 10.28 84.03 0.86 -14.06 16 23 H 0.08 4.86 7.83 -2.91 -0.02 4.84 16 24 C -0.07 -4.58 5.49 84.86 0.47 -4.12 16 25 N -0.95 -62.89 10.31 21.65 0.22 -62.66 16 26 Si 0.98 49.19 29.55 68.60 2.03 51.22 16 27 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 30 C 0.14 6.28 5.35 86.86 0.47 6.74 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.10 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.05 1.36 7.29 -2.39 -0.02 1.34 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 36 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.08 1.57 5.81 -2.39 -0.01 1.56 16 38 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.08 2.01 7.20 -2.39 -0.02 1.99 16 45 H 0.08 3.87 5.47 -11.44 -0.06 3.80 16 46 H 0.05 2.23 7.85 -2.39 -0.02 2.21 16 47 H 0.00 -0.01 7.51 -2.39 -0.02 -0.02 16 48 H -0.01 -0.36 7.38 -2.39 -0.02 -0.37 16 49 H 0.24 15.54 8.31 -92.71 -0.77 14.76 16 50 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 51 H 0.03 1.21 7.87 -2.39 -0.02 1.20 16 Total: -1.00 -85.01 387.55 2.83 -82.18 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.85 Total: 13.41 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.24 Total: 10.04 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -6.26 Total: -134.03 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.04 Total: -22.83 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.03 Total: 51.22 kcal Total: -85.01 2.83 -82.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039202141.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.810 kcal (2) G-P(sol) polarization free energy of solvation -85.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds