Wall clock time and date at job start Wed Apr 1 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38628 * 120.47211 * 2 1 4 4 C 1.38582 * 118.48893 * 179.97438 * 3 2 1 5 5 C 1.38606 * 119.35055 * 0.02562 * 4 3 2 6 6 N 1.31496 * 120.89930 * 359.72179 * 5 4 3 7 7 C 1.32743 * 121.64543 * 0.56546 * 6 5 4 8 8 C 1.48162 * 119.72297 * 179.71108 * 7 6 5 9 9 O 1.21522 * 120.00191 * 105.11454 * 8 7 6 10 10 N 1.34774 * 120.00195 * 285.11159 * 8 7 6 11 11 C 1.46922 * 120.63123 * 4.34051 * 10 8 7 12 12 C 1.53188 * 108.77957 * 233.58869 * 11 10 8 13 13 C 1.53043 * 109.30996 * 305.36320 * 12 11 10 14 14 C 1.53041 * 109.53762 * 61.36423 * 13 12 11 15 15 C 1.46930 * 120.63325 * 184.31692 * 10 8 7 16 16 H 1.08995 * 109.58632 * 246.34911 * 15 10 8 17 17 C 1.53005 * 109.58227 * 6.62813 * 15 10 8 18 18 H 1.08996 * 110.91786 * 41.74382 * 17 15 10 19 19 C 1.55156 * 111.00185 * 277.83723 * 17 15 10 20 20 C 1.54328 * 102.93964 * 206.42716 * 19 17 15 21 21 N 1.47016 * 107.27242 * 22.19298 * 20 19 17 22 22 C 1.36941 * 125.64805 * 181.02110 * 21 20 19 23 23 H 1.08004 * 119.99807 * 182.52152 * 22 21 20 24 24 C 1.38807 * 119.99805 * 2.51331 * 22 21 20 25 25 N 1.31624 * 119.99653 * 131.95900 * 24 22 21 26 26 Si 1.86796 * 120.00518 * 311.95762 * 24 22 21 27 27 H 1.48508 * 109.46640 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47308 * 240.00288 * 26 24 22 29 29 H 1.48500 * 109.47355 * 119.99812 * 26 24 22 30 30 C 1.47428 * 108.70577 * 1.28817 * 21 20 19 31 31 H 1.09007 * 109.47093 * 274.44264 * 1 2 3 32 32 H 1.09004 * 109.47159 * 34.43786 * 1 2 3 33 33 H 1.09001 * 109.47618 * 154.43930 * 1 2 3 34 34 H 1.07996 * 120.75602 * 359.96161 * 3 2 1 35 35 H 1.08000 * 120.32581 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.54548 * 179.97438 * 5 4 3 37 37 H 1.09010 * 109.58565 * 353.37429 * 11 10 8 38 38 H 1.09000 * 109.59004 * 113.65163 * 11 10 8 39 39 H 1.09006 * 109.49926 * 65.31012 * 12 11 10 40 40 H 1.09001 * 109.50128 * 185.37881 * 12 11 10 41 41 H 1.09003 * 109.46023 * 181.38568 * 13 12 11 42 42 H 1.08998 * 109.45853 * 301.34550 * 13 12 11 43 43 H 1.09004 * 109.49916 * 178.68605 * 14 13 12 44 44 H 1.09003 * 109.50000 * 58.58528 * 14 13 12 45 45 H 1.08997 * 110.71891 * 88.06711 * 19 17 15 46 46 H 1.09001 * 110.72059 * 324.78704 * 19 17 15 47 47 H 1.08997 * 109.88160 * 262.77459 * 20 19 17 48 48 H 1.09007 * 110.00958 * 141.68476 * 20 19 17 49 49 H 0.96999 * 120.00026 * 5.02437 * 25 24 22 50 50 H 1.09003 * 110.36743 * 94.47766 * 30 21 20 51 51 H 1.08995 * 110.36966 * 216.80839 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1468 0.0005 5 6 4.2322 -0.0841 0.0005 6 7 3.5406 -1.2025 0.0055 7 6 2.2131 -1.2005 -0.0005 8 6 1.4766 -2.4861 -0.0010 9 8 0.9319 -2.8747 1.0134 10 7 1.4107 -3.2245 -1.1265 11 6 2.1421 -2.8163 -2.3336 12 6 1.1595 -2.7506 -3.5070 13 6 0.4340 -4.0920 -3.6353 14 6 -0.3590 -4.3694 -2.3561 15 6 0.6064 -4.4534 -1.1696 16 1 1.2625 -5.3154 -1.2899 17 6 -0.1890 -4.5915 0.1301 18 1 -0.6035 -3.6312 0.4366 19 6 0.6862 -5.2042 1.2552 20 6 -0.3541 -5.8807 2.1727 21 7 -1.5568 -6.1247 1.3632 22 6 -2.7192 -6.6927 1.8121 23 1 -3.5352 -6.8669 1.1262 24 6 -2.8487 -7.0448 3.1485 25 7 -3.9256 -6.6951 3.8198 26 14 -1.4949 -8.0148 3.9944 27 1 -0.3996 -8.2821 3.0278 28 1 -2.0437 -9.3031 4.4885 29 1 -0.9653 -7.2308 5.1390 30 6 -1.3020 -5.6626 -0.0134 31 1 -0.3634 0.0796 1.0246 32 1 -0.3634 0.8476 -0.5812 33 1 -0.3634 -0.9271 -0.4434 34 1 1.6902 2.1414 -0.0006 35 1 4.1722 2.0596 0.0001 36 1 5.3114 -0.1251 0.0005 37 1 2.5888 -1.8345 -2.1757 38 1 2.9249 -3.5432 -2.5499 39 1 0.4317 -1.9590 -3.3283 40 1 1.7052 -2.5421 -4.4273 41 1 -0.2480 -4.0563 -4.4848 42 1 1.1642 -4.8865 -3.7892 43 1 -0.8941 -5.3136 -2.4572 44 1 -1.0725 -3.5625 -2.1882 45 1 1.2250 -4.4239 1.7928 46 1 1.3780 -5.9413 0.8475 47 1 -0.5961 -5.2225 3.0071 48 1 0.0383 -6.8259 2.5481 49 1 -4.6602 -6.2557 3.3635 50 1 -0.9577 -6.4901 -0.6337 51 1 -2.2027 -5.2187 -0.4373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039202142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:35 Heat of formation + Delta-G solvation = 61.786657 kcal Electronic energy + Delta-G solvation = -31916.648448 eV Core-core repulsion = 28010.936990 eV Total energy + Delta-G solvation = -3905.711458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.27179 -39.91062 -37.42915 -37.02598 -33.93643 -33.35364 -32.88841 -32.04130 -31.33641 -29.16373 -27.78377 -27.55411 -25.73962 -24.30058 -24.02444 -22.68686 -22.33865 -21.32973 -20.03356 -19.75082 -19.62091 -17.50778 -17.16280 -17.04389 -16.27910 -15.98792 -15.32806 -15.00929 -14.82808 -14.57615 -14.41142 -14.12179 -13.94544 -13.67060 -13.49073 -13.44468 -13.27413 -12.99868 -12.96163 -12.72618 -12.62260 -12.29270 -12.19367 -11.96433 -11.79205 -11.40703 -11.11703 -10.86781 -10.80111 -10.70291 -10.54956 -10.21477 -10.11097 -9.98004 -9.95036 -9.79497 -9.62053 -9.27412 -9.02252 -8.84544 -8.43875 -7.84144 -6.88984 -6.34417 -2.81599 0.61334 0.91852 2.49772 2.82531 3.40111 3.62472 3.65713 3.80277 3.99623 4.34540 4.44953 4.57384 4.62520 4.64197 4.73887 4.74216 4.78173 4.93172 5.01090 5.06775 5.19276 5.20324 5.29673 5.34796 5.39049 5.41413 5.50744 5.53869 5.67655 5.70194 5.72250 5.80941 5.83934 5.89174 5.93013 5.95763 5.99333 6.02359 6.15049 6.27771 6.28744 6.36519 6.48188 6.65889 6.76707 6.91262 7.05899 7.17614 7.32666 7.35889 7.56066 8.01666 8.24551 8.51210 9.19263 9.88368 10.60486 11.15751 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003585 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.833533 B = 7808.356294 C = 8772.918470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.079 4.079 4 C -0.160 4.160 5 C 0.092 3.908 6 N -0.456 5.456 7 C 0.098 3.902 8 C 0.564 3.436 9 O -0.486 6.486 10 N -0.594 5.594 11 C 0.114 3.886 12 C -0.135 4.135 13 C -0.120 4.120 14 C -0.131 4.131 15 C 0.160 3.840 16 H 0.073 0.927 17 C -0.093 4.093 18 H 0.103 0.897 19 C -0.118 4.118 20 C 0.116 3.884 21 N -0.602 5.602 22 C -0.363 4.363 23 H 0.074 0.926 24 C -0.001 4.001 25 N -0.884 5.884 26 Si 1.026 2.974 27 H -0.277 1.277 28 H -0.300 1.300 29 H -0.294 1.294 30 C 0.142 3.858 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.160 0.840 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.045 0.955 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.266 0.734 50 H 0.010 0.990 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.290 17.664 -16.966 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C -0.105 4.105 4 C -0.180 4.180 5 C -0.067 4.067 6 N -0.166 5.166 7 C -0.042 4.042 8 C 0.349 3.651 9 O -0.360 6.360 10 N -0.328 5.328 11 C -0.009 4.009 12 C -0.173 4.173 13 C -0.157 4.157 14 C -0.169 4.169 15 C 0.058 3.942 16 H 0.091 0.909 17 C -0.112 4.112 18 H 0.121 0.879 19 C -0.155 4.155 20 C -0.009 4.009 21 N -0.329 5.329 22 C -0.488 4.488 23 H 0.092 0.908 24 C -0.206 4.206 25 N -0.522 5.522 26 Si 0.858 3.142 27 H -0.204 1.204 28 H -0.229 1.229 29 H -0.222 1.222 30 C 0.015 3.985 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.178 0.822 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.048 0.952 49 H 0.077 0.923 50 H 0.028 0.972 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.762 15.942 -14.917 27.525 hybrid contribution -0.608 1.358 -1.501 2.113 sum 16.154 17.300 -16.417 28.806 Atomic orbital electron populations 1.20824 0.89474 1.03348 1.03696 1.20846 0.97891 0.92626 0.98605 1.21471 0.94176 0.97953 0.96858 1.22296 0.95219 0.99772 1.00672 1.22810 1.00413 0.87380 0.96096 1.67711 1.06674 1.31623 1.10581 1.21174 0.90246 0.93778 0.98953 1.17961 0.80838 0.82526 0.83744 1.90925 1.44486 1.68109 1.32464 1.47970 1.48291 1.25130 1.11372 1.21649 0.94053 1.00825 0.84353 1.21938 0.98907 0.98615 0.97851 1.21540 0.99355 0.96850 0.97988 1.22028 0.98008 1.03340 0.93564 1.21389 0.91627 0.84971 0.96261 0.90893 1.22786 0.95983 1.00574 0.91851 0.87921 1.22968 0.97034 0.98364 0.97173 1.21626 0.87287 0.97409 0.94591 1.44730 1.12469 1.71016 1.04686 1.19598 0.90224 1.43591 0.95413 0.90832 1.25465 1.02375 1.00173 0.92549 1.70932 1.09959 1.36921 1.34387 0.84599 0.76413 0.77843 0.75361 1.20426 1.22858 1.22174 1.21634 0.95147 0.93490 0.88213 0.89760 0.90839 0.91018 0.84274 0.84421 0.82243 0.90510 0.91103 0.91556 0.90920 0.91621 0.91735 0.89871 0.91331 0.88984 0.93616 0.95041 0.95196 0.92316 0.97206 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.70 36.01 0.35 -0.83 16 2 C -0.10 -1.05 5.93 -104.09 -0.62 -1.67 16 3 C -0.08 -0.63 9.87 -39.31 -0.39 -1.02 16 4 C -0.16 -1.14 10.11 -39.32 -0.40 -1.54 16 5 C 0.09 0.81 11.18 -17.56 -0.20 0.61 16 6 N -0.46 -5.59 9.82 -9.80 -0.10 -5.69 16 7 C 0.10 1.27 4.69 -83.01 -0.39 0.88 16 8 C 0.56 8.53 5.48 -12.19 -0.07 8.46 16 9 O -0.49 -9.11 10.02 5.35 0.05 -9.06 16 10 N -0.59 -7.80 2.97 -166.20 -0.49 -8.29 16 11 C 0.11 1.14 6.34 -3.71 -0.02 1.11 16 12 C -0.13 -1.11 6.08 -26.61 -0.16 -1.28 16 13 C -0.12 -1.09 5.88 -26.69 -0.16 -1.24 16 14 C -0.13 -1.58 4.76 -26.61 -0.13 -1.70 16 15 C 0.16 2.30 2.65 -67.59 -0.18 2.12 16 16 H 0.07 1.05 7.77 -51.93 -0.40 0.65 16 17 C -0.09 -1.75 1.96 -88.35 -0.17 -1.92 16 18 H 0.10 2.13 5.97 -51.93 -0.31 1.82 16 19 C -0.12 -2.45 5.68 -24.89 -0.14 -2.60 16 20 C 0.12 2.93 5.19 -3.07 -0.02 2.91 16 21 N -0.60 -16.30 3.36 -169.93 -0.57 -16.87 16 22 C -0.36 -11.03 10.20 -15.06 -0.15 -11.18 16 23 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 24 C 0.00 -0.03 5.23 -17.43 -0.09 -0.12 16 25 N -0.88 -28.49 13.70 55.49 0.76 -27.73 16 26 Si 1.03 27.74 26.48 -169.99 -4.50 23.24 16 27 H -0.28 -7.17 5.61 56.52 0.32 -6.85 16 28 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 29 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 30 C 0.14 3.10 5.30 -2.41 -0.01 3.09 16 31 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.07 0.84 6.92 -51.93 -0.36 0.48 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.08 0.76 5.98 -51.92 -0.31 0.45 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 1.04 6.98 -51.93 -0.36 0.68 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.96 5.47 -52.49 -0.29 1.67 16 46 H 0.05 0.89 7.79 -51.93 -0.40 0.48 16 47 H 0.03 0.86 8.05 -51.93 -0.42 0.44 16 48 H 0.03 0.79 4.33 -51.92 -0.22 0.56 16 49 H 0.27 8.46 8.73 -40.82 -0.36 8.10 16 50 H 0.01 0.22 7.64 -51.93 -0.40 -0.18 16 51 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -36.06 383.55 -10.22 -46.28 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.21 Total: -1.75 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.94 Total: -5.91 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.40 Total: -58.58 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.05 Total: -9.06 kcal Atomic # 14 Polarization: 27.74 SS G_CDS: -4.50 Total: 23.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.06 -10.22 -46.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039202142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.071 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds