Wall clock time and date at job start Wed Apr 1 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38629 * 120.46975 * 2 1 4 4 C 1.38591 * 118.48976 * 180.02562 * 3 2 1 5 5 C 1.38597 * 119.34871 * 359.97438 * 4 3 2 6 6 N 1.31499 * 120.90075 * 359.74753 * 5 4 3 7 7 C 1.32737 * 121.64337 * 0.52465 * 6 5 4 8 8 C 1.48171 * 119.72301 * 179.75684 * 7 6 5 9 9 O 1.21509 * 120.00560 * 103.72099 * 8 7 6 10 10 N 1.34780 * 119.99454 * 283.72307 * 8 7 6 11 11 C 1.46925 * 120.63304 * 6.37829 * 10 8 7 12 12 C 1.53194 * 108.77409 * 233.58737 * 11 10 8 13 13 C 1.53044 * 109.31223 * 305.36135 * 12 11 10 14 14 C 1.53075 * 109.65675 * 61.30437 * 13 12 11 15 15 C 1.46930 * 120.62923 * 186.35271 * 10 8 7 16 16 H 1.09000 * 109.58531 * 246.34604 * 15 10 8 17 17 C 1.52998 * 109.58527 * 6.63045 * 15 10 8 18 18 H 1.09010 * 110.63929 * 303.54964 * 17 15 10 19 19 C 1.55155 * 110.72436 * 66.69252 * 17 15 10 20 20 C 1.54911 * 101.58470 * 154.04464 * 19 17 15 21 21 N 1.47424 * 104.82987 * 322.99152 * 20 19 17 22 22 C 1.36938 * 125.64967 * 204.09652 * 21 20 19 23 23 H 1.08000 * 119.99895 * 180.02562 * 22 21 20 24 24 C 1.38813 * 119.99897 * 0.02562 * 22 21 20 25 25 N 1.31621 * 119.99668 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46932 * 60.00069 * 26 24 22 28 28 H 1.48497 * 109.47038 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.46863 * 300.00029 * 26 24 22 30 30 C 1.47026 * 108.70607 * 24.12785 * 21 20 19 31 31 H 1.08996 * 109.47742 * 264.57139 * 1 2 3 32 32 H 1.09000 * 109.47310 * 24.57345 * 1 2 3 33 33 H 1.09000 * 109.46820 * 144.57209 * 1 2 3 34 34 H 1.08004 * 120.75708 * 0.03337 * 3 2 1 35 35 H 1.07998 * 120.32314 * 179.97438 * 4 3 2 36 36 H 1.08002 * 119.54734 * 180.02562 * 5 4 3 37 37 H 1.08999 * 109.58869 * 353.36904 * 11 10 8 38 38 H 1.09000 * 109.58854 * 113.65682 * 11 10 8 39 39 H 1.08992 * 109.49971 * 65.31470 * 12 11 10 40 40 H 1.09001 * 109.49829 * 185.38237 * 12 11 10 41 41 H 1.08997 * 109.45694 * 181.38496 * 13 12 11 42 42 H 1.08997 * 109.46103 * 301.36275 * 13 12 11 43 43 H 1.08995 * 109.62577 * 178.83225 * 14 13 12 44 44 H 1.08994 * 109.39234 * 58.71587 * 14 13 12 45 45 H 1.08999 * 111.00230 * 35.96597 * 19 17 15 46 46 H 1.09004 * 111.00706 * 272.11799 * 19 17 15 47 47 H 1.09000 * 110.36536 * 81.82780 * 20 19 17 48 48 H 1.09001 * 110.36787 * 204.15452 * 20 19 17 49 49 H 0.97000 * 119.99839 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.88533 * 239.52506 * 30 21 20 51 51 H 1.08993 * 109.88379 * 118.35763 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2321 -0.0839 -0.0005 6 7 3.5406 -1.2023 0.0050 7 6 2.2132 -1.2003 0.0003 8 6 1.4766 -2.4860 0.0014 9 8 0.9545 -2.8863 1.0229 10 7 1.3859 -3.2115 -1.1309 11 6 2.1261 -2.8138 -2.3361 12 6 1.1428 -2.7079 -3.5061 13 6 0.3774 -4.0260 -3.6448 14 6 -0.4203 -4.2952 -2.3664 15 6 0.5453 -4.4154 -1.1832 16 1 1.1752 -5.2955 -1.3134 17 6 -0.2505 -4.5422 0.1174 18 1 0.4188 -4.5558 0.9777 19 6 -1.2832 -3.3911 0.2435 20 6 -2.3581 -4.0359 1.1537 21 7 -2.4200 -5.4449 0.7247 22 6 -3.4922 -6.2816 0.8846 23 1 -3.4379 -7.3019 0.5347 24 6 -4.6489 -5.8182 1.4964 25 7 -4.7152 -4.5746 1.9224 26 14 -6.1113 -6.9597 1.7153 27 1 -5.7099 -8.1253 2.5430 28 1 -7.2133 -6.2284 2.3906 29 1 -6.5735 -7.4325 0.3855 30 6 -1.1396 -5.8035 0.0973 31 1 -0.3634 -0.0972 1.0230 32 1 -0.3634 0.9346 -0.4274 33 1 -0.3633 -0.8374 -0.5957 34 1 1.6900 2.1415 0.0005 35 1 4.1721 2.0598 -0.0010 36 1 5.3114 -0.1249 -0.0005 37 1 2.6021 -1.8474 -2.1704 38 1 2.8863 -3.5617 -2.5615 39 1 0.4395 -1.8969 -3.3179 40 1 1.6921 -2.5072 -4.4259 41 1 -0.3054 -3.9618 -4.4920 42 1 1.0833 -4.8403 -3.8080 43 1 -0.9814 -5.2234 -2.4737 44 1 -1.1107 -3.4704 -2.1902 45 1 -1.6998 -3.1316 -0.7297 46 1 -0.8389 -2.5182 0.7218 47 1 -2.0583 -3.9706 2.1996 48 1 -3.3227 -3.5509 1.0037 49 1 -5.5235 -4.2507 2.3496 50 1 -1.3072 -6.1224 -0.9314 51 1 -0.6611 -6.6033 0.6622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039202143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:39 Heat of formation + Delta-G solvation = 57.783124 kcal Electronic energy + Delta-G solvation = -32178.499207 eV Core-core repulsion = 28272.614143 eV Total energy + Delta-G solvation = -3905.885064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23493 -39.86103 -37.36341 -36.74405 -33.85492 -33.28877 -32.77172 -31.96650 -30.84123 -28.81772 -27.65148 -27.36105 -25.56827 -24.31571 -24.20369 -22.94332 -22.31333 -21.09793 -20.32185 -19.61997 -18.83372 -17.32091 -16.92942 -16.76574 -15.93094 -15.76527 -15.23873 -14.87337 -14.75295 -14.54388 -14.40106 -14.17470 -13.81995 -13.67608 -13.50930 -13.35533 -13.12111 -12.85579 -12.71276 -12.59420 -12.41901 -12.07057 -11.88201 -11.60229 -11.34730 -11.11968 -11.02770 -10.90377 -10.72148 -10.59263 -10.50890 -10.21783 -10.03129 -9.96139 -9.81419 -9.63107 -9.56312 -9.28463 -9.15526 -8.66911 -8.46725 -8.27188 -6.64155 -5.50062 -2.91069 0.68821 0.99287 2.60495 2.91566 3.47155 3.47612 3.51437 3.53030 4.07483 4.43624 4.51929 4.60557 4.68896 4.70429 4.74009 4.85022 4.89196 5.07975 5.14643 5.26170 5.31775 5.34970 5.44415 5.48742 5.55358 5.56964 5.64593 5.72046 5.79368 5.83519 5.87999 5.91154 5.96538 6.01187 6.03163 6.12927 6.15429 6.22443 6.34968 6.37478 6.53717 6.65100 6.73185 6.91499 7.00483 7.09912 7.35866 7.48054 7.62558 7.74036 7.83823 8.04759 8.30279 8.53505 9.37871 9.99437 10.67285 11.52793 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003391 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.509669 B = 8253.960835 C = 9173.951985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 C -0.079 4.079 4 C -0.160 4.160 5 C 0.090 3.910 6 N -0.457 5.457 7 C 0.097 3.903 8 C 0.570 3.430 9 O -0.489 6.489 10 N -0.593 5.593 11 C 0.115 3.885 12 C -0.135 4.135 13 C -0.119 4.119 14 C -0.137 4.137 15 C 0.161 3.839 16 H 0.070 0.930 17 C -0.102 4.102 18 H 0.109 0.891 19 C -0.140 4.140 20 C 0.157 3.843 21 N -0.603 5.603 22 C -0.218 4.218 23 H 0.074 0.926 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.912 3.088 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.287 1.287 30 C 0.136 3.864 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.008 0.992 48 H 0.099 0.901 49 H 0.250 0.750 50 H 0.021 0.979 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.008 13.104 -11.567 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.097 4.097 3 C -0.105 4.105 4 C -0.180 4.180 5 C -0.069 4.069 6 N -0.167 5.167 7 C -0.042 4.042 8 C 0.355 3.645 9 O -0.362 6.362 10 N -0.326 5.326 11 C -0.009 4.009 12 C -0.173 4.173 13 C -0.157 4.157 14 C -0.175 4.175 15 C 0.059 3.941 16 H 0.088 0.912 17 C -0.121 4.121 18 H 0.127 0.873 19 C -0.178 4.178 20 C 0.033 3.967 21 N -0.328 5.328 22 C -0.347 4.347 23 H 0.092 0.908 24 C -0.209 4.209 25 N -0.571 5.571 26 Si 0.742 3.258 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.009 3.991 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.026 0.974 48 H 0.117 0.883 49 H 0.061 0.939 50 H 0.038 0.962 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 17.925 12.049 -10.905 24.195 hybrid contribution -0.958 0.291 0.121 1.009 sum 16.966 12.340 -10.784 23.589 Atomic orbital electron populations 1.20919 0.89271 1.03454 1.04137 1.20882 0.98016 0.92570 0.98278 1.21499 0.94150 0.97967 0.96864 1.22285 0.95230 0.99722 1.00772 1.22785 1.00351 0.87415 0.96330 1.67697 1.06681 1.31621 1.10692 1.21171 0.90225 0.93868 0.98960 1.17847 0.79978 0.82587 0.84070 1.90870 1.44788 1.68016 1.32545 1.47953 1.46715 1.26982 1.10979 1.21645 0.93882 1.00801 0.84542 1.21933 0.98744 0.98875 0.97745 1.21543 0.99061 0.96812 0.98257 1.22163 0.98134 1.04030 0.93192 1.21284 0.90853 0.85162 0.96780 0.91200 1.22789 0.96831 0.96584 0.95905 0.87286 1.23455 0.96858 0.97569 0.99886 1.21839 0.97638 0.84076 0.93181 1.44492 1.10192 1.09517 1.68644 1.19039 0.90614 0.93026 1.31987 0.90804 1.24763 0.98188 0.96694 1.01224 1.69839 1.27293 1.14264 1.45672 0.86194 0.82329 0.79599 0.77632 1.21366 1.21686 1.21332 1.21438 0.87598 0.94419 0.95610 0.89514 0.90874 0.90536 0.84262 0.84480 0.82315 0.90560 0.91186 0.91534 0.91054 0.91743 0.92004 0.89805 0.90397 0.93111 0.90923 0.97428 0.88300 0.93945 0.96166 0.96727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.09 36.00 0.33 -1.06 16 2 C -0.09 -1.10 5.93 -104.10 -0.62 -1.72 16 3 C -0.08 -0.69 9.83 -39.31 -0.39 -1.08 16 4 C -0.16 -1.22 10.11 -39.32 -0.40 -1.62 16 5 C 0.09 0.83 11.18 -17.56 -0.20 0.63 16 6 N -0.46 -5.82 9.81 -9.80 -0.10 -5.92 16 7 C 0.10 1.33 4.71 -83.01 -0.39 0.94 16 8 C 0.57 9.06 5.02 -12.18 -0.06 9.00 16 9 O -0.49 -9.53 10.66 5.36 0.06 -9.47 16 10 N -0.59 -8.30 2.95 -166.20 -0.49 -8.79 16 11 C 0.11 1.24 6.35 -3.71 -0.02 1.21 16 12 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 13 C -0.12 -1.25 5.88 -26.67 -0.16 -1.41 16 14 C -0.14 -1.92 4.80 -26.59 -0.13 -2.05 16 15 C 0.16 2.47 2.75 -67.60 -0.19 2.29 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.10 -2.00 2.06 -88.79 -0.18 -2.19 16 18 H 0.11 2.38 5.80 -52.60 -0.31 2.07 16 19 C -0.14 -2.92 5.25 -24.58 -0.13 -3.04 16 20 C 0.16 4.15 5.89 -2.53 -0.01 4.13 16 21 N -0.60 -16.41 3.39 -170.07 -0.58 -16.99 16 22 C -0.22 -6.37 10.27 -15.06 -0.15 -6.52 16 23 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 24 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 25 N -0.92 -28.02 10.09 55.49 0.56 -27.46 16 26 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 C 0.14 3.05 6.66 -3.06 -0.02 3.03 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.08 1.00 6.53 -51.93 -0.34 0.66 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.08 0.81 5.97 -51.93 -0.31 0.50 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.26 6.42 -51.93 -0.33 0.93 16 44 H 0.08 1.21 5.70 -51.93 -0.30 0.92 16 45 H 0.05 1.02 5.48 -51.93 -0.28 0.74 16 46 H 0.07 1.48 4.45 -51.93 -0.23 1.25 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.10 2.88 5.87 -51.93 -0.30 2.57 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.02 0.43 5.96 -51.93 -0.31 0.13 16 51 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -34.30 378.97 -10.59 -44.89 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.75 Total: 1.58 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -2.98 Total: -1.39 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.60 Total: -59.16 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.30 -10.59 -44.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039202143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.673 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds