Wall clock time and date at job start Wed Apr 1 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38629 * 120.46975 * 2 1 4 4 C 1.38591 * 118.48976 * 180.02562 * 3 2 1 5 5 C 1.38597 * 119.34871 * 359.97438 * 4 3 2 6 6 N 1.31499 * 120.90075 * 359.74753 * 5 4 3 7 7 C 1.32737 * 121.64337 * 0.52465 * 6 5 4 8 8 C 1.48171 * 119.72301 * 179.75684 * 7 6 5 9 9 O 1.21509 * 120.00560 * 103.72099 * 8 7 6 10 10 N 1.34780 * 119.99454 * 283.72307 * 8 7 6 11 11 C 1.46925 * 120.63304 * 6.37829 * 10 8 7 12 12 C 1.53194 * 108.77409 * 233.58737 * 11 10 8 13 13 C 1.53044 * 109.31223 * 305.36135 * 12 11 10 14 14 C 1.53075 * 109.65675 * 61.30437 * 13 12 11 15 15 C 1.46930 * 120.62923 * 186.35271 * 10 8 7 16 16 H 1.09000 * 109.58531 * 246.34604 * 15 10 8 17 17 C 1.52998 * 109.58527 * 6.63045 * 15 10 8 18 18 H 1.09010 * 110.63929 * 303.54964 * 17 15 10 19 19 C 1.55155 * 110.72436 * 66.69252 * 17 15 10 20 20 C 1.54911 * 101.58470 * 154.04464 * 19 17 15 21 21 N 1.47424 * 104.82987 * 322.99152 * 20 19 17 22 22 C 1.36938 * 125.64967 * 204.09652 * 21 20 19 23 23 H 1.08000 * 119.99895 * 180.02562 * 22 21 20 24 24 C 1.38813 * 119.99897 * 0.02562 * 22 21 20 25 25 N 1.31621 * 119.99668 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46932 * 60.00069 * 26 24 22 28 28 H 1.48497 * 109.47038 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.46863 * 300.00029 * 26 24 22 30 30 C 1.47026 * 108.70607 * 24.12785 * 21 20 19 31 31 H 1.08996 * 109.47742 * 264.57139 * 1 2 3 32 32 H 1.09000 * 109.47310 * 24.57345 * 1 2 3 33 33 H 1.09000 * 109.46820 * 144.57209 * 1 2 3 34 34 H 1.08004 * 120.75708 * 0.03337 * 3 2 1 35 35 H 1.07998 * 120.32314 * 179.97438 * 4 3 2 36 36 H 1.08002 * 119.54734 * 180.02562 * 5 4 3 37 37 H 1.08999 * 109.58869 * 353.36904 * 11 10 8 38 38 H 1.09000 * 109.58854 * 113.65682 * 11 10 8 39 39 H 1.08992 * 109.49971 * 65.31470 * 12 11 10 40 40 H 1.09001 * 109.49829 * 185.38237 * 12 11 10 41 41 H 1.08997 * 109.45694 * 181.38496 * 13 12 11 42 42 H 1.08997 * 109.46103 * 301.36275 * 13 12 11 43 43 H 1.08995 * 109.62577 * 178.83225 * 14 13 12 44 44 H 1.08994 * 109.39234 * 58.71587 * 14 13 12 45 45 H 1.08999 * 111.00230 * 35.96597 * 19 17 15 46 46 H 1.09004 * 111.00706 * 272.11799 * 19 17 15 47 47 H 1.09000 * 110.36536 * 81.82780 * 20 19 17 48 48 H 1.09001 * 110.36787 * 204.15452 * 20 19 17 49 49 H 0.97000 * 119.99839 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.88533 * 239.52506 * 30 21 20 51 51 H 1.08993 * 109.88379 * 118.35763 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2099 1.1948 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2321 -0.0839 -0.0005 6 7 3.5406 -1.2023 0.0050 7 6 2.2132 -1.2003 0.0003 8 6 1.4766 -2.4860 0.0014 9 8 0.9545 -2.8863 1.0229 10 7 1.3859 -3.2115 -1.1309 11 6 2.1261 -2.8138 -2.3361 12 6 1.1428 -2.7079 -3.5061 13 6 0.3774 -4.0260 -3.6448 14 6 -0.4203 -4.2952 -2.3664 15 6 0.5453 -4.4154 -1.1832 16 1 1.1752 -5.2955 -1.3134 17 6 -0.2505 -4.5422 0.1174 18 1 0.4188 -4.5558 0.9777 19 6 -1.2832 -3.3911 0.2435 20 6 -2.3581 -4.0359 1.1537 21 7 -2.4200 -5.4449 0.7247 22 6 -3.4922 -6.2816 0.8846 23 1 -3.4379 -7.3019 0.5347 24 6 -4.6489 -5.8182 1.4964 25 7 -4.7152 -4.5746 1.9224 26 14 -6.1113 -6.9597 1.7153 27 1 -5.7099 -8.1253 2.5430 28 1 -7.2133 -6.2284 2.3906 29 1 -6.5735 -7.4325 0.3855 30 6 -1.1396 -5.8035 0.0973 31 1 -0.3634 -0.0972 1.0230 32 1 -0.3634 0.9346 -0.4274 33 1 -0.3633 -0.8374 -0.5957 34 1 1.6900 2.1415 0.0005 35 1 4.1721 2.0598 -0.0010 36 1 5.3114 -0.1249 -0.0005 37 1 2.6021 -1.8474 -2.1704 38 1 2.8863 -3.5617 -2.5615 39 1 0.4395 -1.8969 -3.3179 40 1 1.6921 -2.5072 -4.4259 41 1 -0.3054 -3.9618 -4.4920 42 1 1.0833 -4.8403 -3.8080 43 1 -0.9814 -5.2234 -2.4737 44 1 -1.1107 -3.4704 -2.1902 45 1 -1.6998 -3.1316 -0.7297 46 1 -0.8389 -2.5182 0.7218 47 1 -2.0583 -3.9706 2.1996 48 1 -3.3227 -3.5509 1.0037 49 1 -5.5235 -4.2507 2.3496 50 1 -1.3072 -6.1224 -0.9314 51 1 -0.6611 -6.6033 0.6622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039202143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:38 Heat of formation + Delta-G solvation = 36.486629 kcal Electronic energy + Delta-G solvation = -32179.422692 eV Core-core repulsion = 28272.614143 eV Total energy + Delta-G solvation = -3906.808549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.32161 -40.84543 -38.76632 -38.23303 -34.98117 -34.66379 -33.94381 -32.99774 -32.34403 -30.68469 -28.98745 -28.55146 -26.90405 -26.05362 -25.13518 -24.17128 -23.16599 -22.32195 -21.91361 -21.17971 -20.04466 -18.96354 -18.22900 -17.76898 -17.18645 -16.98206 -16.64588 -16.38746 -15.96301 -15.73368 -15.51252 -15.39776 -15.06050 -14.85016 -14.67532 -14.33713 -14.26026 -14.11934 -13.98299 -13.79954 -13.51482 -13.47892 -13.37076 -13.03032 -12.90458 -12.71883 -12.60629 -12.29177 -12.13802 -12.08559 -11.88310 -11.70589 -11.60466 -11.54647 -11.31017 -11.09664 -10.75292 -10.71436 -10.65002 -10.10533 -9.82630 -9.51697 -8.85941 -7.74716 -5.20536 -0.09144 0.27651 1.43909 1.46516 1.48921 1.55159 1.84676 2.50236 2.70294 3.15297 3.33064 3.60077 3.70625 3.77636 3.84019 3.84989 3.94773 3.99513 4.05684 4.08624 4.14679 4.24621 4.34926 4.36934 4.47041 4.50958 4.57495 4.60108 4.63345 4.68423 4.73014 4.76388 4.84957 4.93330 4.99010 5.05657 5.07391 5.14096 5.20481 5.21909 5.23688 5.25339 5.32442 5.44053 5.49277 5.52257 5.61654 5.68509 5.79682 5.82650 6.30034 6.36126 6.84713 7.11237 7.12504 7.79610 8.47105 9.26828 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003391 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.509669 B = 8253.960835 C = 9173.951985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.109 4.109 3 C -0.076 4.076 4 C -0.142 4.142 5 C 0.085 3.915 6 N -0.484 5.484 7 C 0.071 3.929 8 C 0.566 3.434 9 O -0.542 6.542 10 N -0.590 5.590 11 C 0.113 3.887 12 C -0.128 4.128 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.167 3.833 16 H 0.084 0.916 17 C -0.086 4.086 18 H 0.086 0.914 19 C -0.114 4.114 20 C 0.164 3.836 21 N -0.623 5.623 22 C -0.241 4.241 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.951 5.951 26 Si 0.985 3.015 27 H -0.280 1.280 28 H -0.293 1.293 29 H -0.272 1.272 30 C 0.132 3.868 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.076 0.924 47 H -0.036 1.036 48 H 0.070 0.930 49 H 0.246 0.754 50 H 0.040 0.960 51 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.177 14.570 -14.301 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.161 4.161 5 C -0.074 4.074 6 N -0.195 5.195 7 C -0.067 4.067 8 C 0.353 3.647 9 O -0.420 6.420 10 N -0.322 5.322 11 C -0.009 4.009 12 C -0.166 4.166 13 C -0.149 4.149 14 C -0.170 4.170 15 C 0.064 3.936 16 H 0.102 0.898 17 C -0.105 4.105 18 H 0.103 0.897 19 C -0.152 4.152 20 C 0.039 3.961 21 N -0.349 5.349 22 C -0.370 4.370 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.812 3.188 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.198 1.198 30 C 0.006 3.994 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.188 0.812 35 H 0.197 0.803 36 H 0.207 0.793 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.094 0.906 47 H -0.018 1.018 48 H 0.087 0.913 49 H 0.055 0.945 50 H 0.058 0.942 51 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 20.131 13.503 -13.697 27.842 hybrid contribution -1.505 -0.093 1.005 1.812 sum 18.626 13.410 -12.692 26.227 Atomic orbital electron populations 1.20847 0.89984 1.04003 1.02554 1.20946 0.97738 0.93219 0.99295 1.21893 0.94902 0.97871 0.95447 1.22743 0.94907 1.00686 0.97771 1.23418 1.01706 0.87176 0.95076 1.67631 1.06249 1.33721 1.11905 1.20804 0.90901 0.93017 1.01993 1.18368 0.79375 0.83380 0.83611 1.90833 1.47321 1.69521 1.34308 1.48053 1.46202 1.26081 1.11850 1.21884 0.94203 1.01438 0.83391 1.21913 0.98364 0.97915 0.98370 1.21513 0.99210 0.97953 0.96272 1.22075 0.97780 1.02582 0.94565 1.21125 0.91167 0.86631 0.94696 0.89817 1.22547 0.95947 0.94153 0.97867 0.89652 1.23201 0.95365 0.97853 0.98801 1.21582 0.97764 0.84666 0.92076 1.44803 1.11518 1.09667 1.68892 1.19482 0.91534 0.93736 1.32242 0.90078 1.25714 1.01131 0.98384 1.01084 1.70117 1.27694 1.16080 1.46202 0.85060 0.78267 0.77447 0.77985 1.20645 1.21856 1.19802 1.21627 0.86245 0.95648 0.95855 0.91744 0.87967 0.92785 0.81222 0.80296 0.79291 0.90105 0.89737 0.92331 0.87866 0.90432 0.90482 0.90991 0.92378 0.92245 0.90551 1.01760 0.91252 0.94471 0.94218 0.97438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.09 71.23 0.65 -2.10 16 2 C -0.11 -2.46 5.93 -19.52 -0.12 -2.58 16 3 C -0.08 -1.09 9.83 22.45 0.22 -0.86 16 4 C -0.14 -1.56 10.11 22.44 0.23 -1.33 16 5 C 0.09 1.31 11.18 84.83 0.95 2.26 16 6 N -0.48 -11.74 9.81 -184.91 -1.81 -13.55 16 7 C 0.07 1.93 4.71 41.90 0.20 2.12 16 8 C 0.57 18.65 5.02 86.88 0.44 19.08 16 9 O -0.54 -22.73 10.66 -3.74 -0.04 -22.77 16 10 N -0.59 -16.47 2.95 -798.03 -2.36 -18.82 16 11 C 0.11 2.20 6.35 86.36 0.55 2.75 16 12 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 13 C -0.11 -2.06 5.88 30.63 0.18 -1.88 16 14 C -0.13 -3.62 4.80 30.69 0.15 -3.47 16 15 C 0.17 5.13 2.75 44.97 0.12 5.25 16 16 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.09 -3.56 2.06 -9.61 -0.02 -3.58 16 18 H 0.09 4.01 5.80 -13.11 -0.08 3.93 16 19 C -0.11 -5.12 5.25 31.99 0.17 -4.95 16 20 C 0.16 9.36 5.89 86.86 0.51 9.87 16 21 N -0.62 -35.73 3.39 -691.98 -2.35 -38.08 16 22 C -0.24 -14.56 10.27 84.03 0.86 -13.70 16 23 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 24 C -0.07 -4.29 5.49 84.86 0.47 -3.83 16 25 N -0.95 -60.68 10.09 21.65 0.22 -60.46 16 26 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 27 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 30 C 0.13 6.16 6.66 86.73 0.58 6.74 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 1.69 8.06 -2.39 -0.02 1.67 16 33 H 0.05 1.48 6.53 -2.39 -0.02 1.47 16 34 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.08 1.56 5.97 -2.39 -0.01 1.55 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 2.13 6.42 -2.39 -0.02 2.12 16 44 H 0.06 1.82 5.70 -2.39 -0.01 1.81 16 45 H 0.06 2.53 5.48 -2.39 -0.01 2.52 16 46 H 0.08 3.41 4.45 -2.38 -0.01 3.39 16 47 H -0.04 -2.28 8.14 -2.39 -0.02 -2.30 16 48 H 0.07 4.35 5.87 -2.39 -0.01 4.34 16 49 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 50 H 0.04 1.72 5.96 -2.39 -0.01 1.70 16 51 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -81.55 378.97 2.88 -78.68 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.88 Total: 16.97 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.31 Total: 7.93 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -6.30 Total: -130.91 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.04 Total: -22.77 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -81.55 2.88 -78.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039202143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.163 kcal (2) G-P(sol) polarization free energy of solvation -81.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds