Wall clock time and date at job start Wed Apr 1 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 120.35345 * 2 1 4 4 N 1.31920 * 121.08069 * 179.74476 * 3 2 1 5 5 C 1.31691 * 121.88235 * 0.57696 * 4 3 2 6 6 C 1.39531 * 120.56372 * 359.42664 * 5 4 3 7 7 C 1.47839 * 120.55581 * 180.25787 * 6 5 4 8 8 O 1.21553 * 119.99676 * 217.33092 * 7 6 5 9 9 N 1.34768 * 120.00229 * 37.32950 * 7 6 5 10 10 C 1.46926 * 120.63296 * 6.93932 * 9 7 6 11 11 C 1.53625 * 108.54080 * 126.36787 * 10 9 7 12 12 C 1.53042 * 109.24326 * 54.86445 * 11 10 9 13 13 C 1.53044 * 109.53332 * 298.50765 * 12 11 10 14 14 C 1.46933 * 120.63031 * 187.22299 * 9 7 6 15 15 H 1.09001 * 109.58815 * 113.65737 * 14 9 7 16 16 C 1.52995 * 109.58637 * 353.37254 * 14 9 7 17 17 H 1.09005 * 110.63879 * 313.56739 * 16 14 9 18 18 C 1.55159 * 110.72261 * 76.71072 * 16 14 9 19 19 C 1.55116 * 101.48378 * 153.73535 * 18 16 14 20 20 N 1.47417 * 104.94667 * 323.22083 * 19 18 16 21 21 C 1.36937 * 125.65224 * 204.04232 * 20 19 18 22 22 H 1.08005 * 120.00221 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00184 * 359.95746 * 21 20 19 24 24 N 1.31626 * 119.99692 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00453 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46914 * 89.99916 * 25 23 21 27 27 H 1.48498 * 109.47270 * 210.00234 * 25 23 21 28 28 H 1.48496 * 109.46940 * 330.00268 * 25 23 21 29 29 C 1.47025 * 108.70336 * 24.00694 * 20 19 18 30 30 C 1.38359 * 120.34659 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46929 * 269.97731 * 1 2 3 32 32 H 1.08999 * 109.47196 * 29.97502 * 1 2 3 33 33 H 1.09000 * 109.47501 * 149.97544 * 1 2 3 34 34 H 1.08005 * 119.45531 * 0.02682 * 3 2 1 35 35 H 1.07999 * 119.71761 * 179.70581 * 5 4 3 36 36 H 1.08998 * 109.58906 * 246.20049 * 10 9 7 37 37 H 1.09004 * 109.58604 * 6.63198 * 10 9 7 38 38 H 1.09000 * 109.63695 * 294.86561 * 11 10 9 39 39 H 1.09009 * 109.43075 * 174.72644 * 11 10 9 40 40 H 1.09000 * 109.45855 * 178.49130 * 12 11 10 41 41 H 1.08991 * 109.46411 * 58.52462 * 12 11 10 42 42 H 1.09009 * 109.49610 * 301.41628 * 13 12 11 43 43 H 1.09002 * 109.52416 * 181.33326 * 13 12 11 44 44 H 1.09001 * 111.00588 * 271.94240 * 18 16 14 45 45 H 1.08998 * 110.99722 * 35.79125 * 18 16 14 46 46 H 1.09004 * 110.41822 * 204.29213 * 19 18 16 47 47 H 1.08995 * 110.21109 * 82.04749 * 19 18 16 48 48 H 0.97002 * 119.99865 * 180.02562 * 24 23 21 49 49 H 1.08994 * 109.88377 * 239.52078 * 29 20 19 50 50 H 1.09001 * 109.88288 * 118.35785 * 29 20 19 51 51 H 1.08002 * 120.85624 * 359.94545 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 0.0050 5 6 4.2349 0.1014 -0.0010 6 6 3.6053 -1.1438 -0.0011 7 6 4.4022 -2.3890 -0.0021 8 8 4.0244 -3.3518 -0.6406 9 7 5.5476 -2.4566 0.7048 10 6 5.9407 -1.3599 1.6001 11 6 6.2123 -1.9420 2.9956 12 6 7.2490 -3.0621 2.8818 13 6 6.6992 -4.1799 1.9927 14 6 6.4302 -3.6257 0.5901 15 1 7.3707 -3.3294 0.1255 16 6 5.7519 -4.6986 -0.2639 17 1 4.7168 -4.8399 0.0474 18 6 5.8270 -4.3306 -1.7694 19 6 5.7553 -5.7306 -2.4335 20 7 6.5211 -6.6160 -1.5375 21 6 7.1243 -7.7906 -1.9006 22 1 7.6650 -8.3695 -1.1664 23 6 7.0406 -8.2374 -3.2122 24 7 6.3818 -7.5317 -4.1070 25 14 7.8627 -9.8399 -3.7074 26 1 6.9079 -10.9628 -3.5258 27 1 8.2743 -9.7655 -5.1322 28 1 9.0594 -10.0655 -2.8576 29 6 6.5308 -6.0288 -0.1897 30 6 2.2060 -1.1940 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6630 2.1275 0.0004 35 1 5.3135 0.1559 -0.0014 36 1 6.8430 -0.8822 1.2185 37 1 5.1342 -0.6288 1.6583 38 1 5.2879 -2.3427 3.4116 39 1 6.5951 -1.1569 3.6478 40 1 7.4643 -3.4597 3.8736 41 1 8.1647 -2.6662 2.4428 42 1 5.7701 -4.5595 2.4183 43 1 7.4280 -4.9880 1.9310 44 1 4.9790 -3.7118 -2.0631 45 1 6.7695 -3.8359 -2.0040 46 1 6.2116 -5.7058 -3.4231 47 1 4.7195 -6.0629 -2.5007 48 1 6.3230 -7.8441 -5.0234 49 1 7.5571 -5.8403 0.1252 50 1 6.0436 -6.7050 0.5128 51 1 1.6857 -2.1405 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039208493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:51 Heat of formation + Delta-G solvation = 38.490555 kcal Electronic energy + Delta-G solvation = -31357.056239 eV Core-core repulsion = 27450.334586 eV Total energy + Delta-G solvation = -3906.721653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26509 -40.87213 -38.74819 -38.32773 -35.15249 -34.66649 -34.03278 -33.06175 -32.21858 -30.88179 -28.79416 -28.23882 -27.10855 -26.06491 -25.12836 -23.84071 -23.63045 -22.27606 -21.52281 -21.07767 -20.37589 -18.89269 -18.11856 -18.00198 -17.49353 -17.08114 -16.71562 -16.46601 -16.16212 -15.64240 -15.44786 -15.16108 -14.93101 -14.62713 -14.58639 -14.23758 -14.17538 -14.15320 -14.10865 -13.65603 -13.63884 -13.49640 -13.37668 -13.11885 -12.93146 -12.76275 -12.70182 -12.29326 -12.16909 -12.04092 -11.94081 -11.74430 -11.60373 -11.46767 -11.33415 -11.10164 -10.85399 -10.73929 -10.66275 -10.03517 -9.80265 -9.49961 -8.88638 -7.76061 -5.22559 -0.29759 0.14992 1.43237 1.47039 1.55788 1.69636 1.89311 2.49169 2.71870 3.23971 3.31996 3.50512 3.68220 3.73391 3.81441 3.83652 3.85615 3.92731 3.96843 4.08222 4.18256 4.19889 4.25359 4.33858 4.41583 4.52395 4.56967 4.65340 4.67014 4.74336 4.76834 4.82792 4.89860 4.91581 4.95388 4.99339 5.09184 5.12643 5.16595 5.19884 5.24337 5.26526 5.30591 5.43405 5.47057 5.54055 5.59611 5.62883 5.78621 5.81620 6.29045 6.39659 6.82591 7.09564 7.17845 7.78277 8.45470 9.25602 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.003090 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.879688 B = 9058.653759 C =10499.836963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.114 3.886 4 N -0.497 5.497 5 C 0.121 3.879 6 C -0.184 4.184 7 C 0.542 3.458 8 O -0.539 6.539 9 N -0.596 5.596 10 C 0.092 3.908 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.128 4.128 14 C 0.167 3.833 15 H 0.075 0.925 16 C -0.073 4.073 17 H 0.085 0.915 18 C -0.115 4.115 19 C 0.163 3.837 20 N -0.627 5.627 21 C -0.240 4.240 22 H 0.083 0.917 23 C -0.074 4.074 24 N -0.953 5.953 25 Si 0.986 3.014 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.265 1.265 29 C 0.136 3.864 30 C -0.042 4.042 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.191 0.809 35 H 0.176 0.824 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.066 0.934 47 H -0.031 1.031 48 H 0.245 0.755 49 H 0.033 0.967 50 H 0.013 0.987 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 22.489 17.030 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C -0.042 4.042 4 N -0.205 5.205 5 C -0.037 4.037 6 C -0.190 4.190 7 C 0.331 3.669 8 O -0.419 6.419 9 N -0.328 5.328 10 C -0.029 4.029 11 C -0.166 4.166 12 C -0.152 4.152 13 C -0.167 4.167 14 C 0.064 3.936 15 H 0.093 0.907 16 C -0.092 4.092 17 H 0.103 0.897 18 C -0.153 4.153 19 C 0.038 3.962 20 N -0.353 5.353 21 C -0.369 4.369 22 H 0.101 0.899 23 C -0.266 4.266 24 N -0.603 5.603 25 Si 0.814 3.186 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.190 1.190 29 C 0.010 3.990 30 C -0.068 4.068 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.208 0.792 35 H 0.193 0.807 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.084 0.916 47 H -0.013 1.013 48 H 0.055 0.945 49 H 0.051 0.949 50 H 0.031 0.969 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.095 22.668 16.568 28.731 hybrid contribution -0.234 -2.311 -0.861 2.477 sum -6.329 20.357 15.707 26.480 Atomic orbital electron populations 1.20814 0.87551 1.04329 1.03905 1.21198 0.99431 0.92850 1.00409 1.23423 0.89576 0.98833 0.92409 1.67789 1.09006 1.30608 1.13058 1.23280 1.01200 0.86066 0.93114 1.20986 0.95372 0.94755 1.07850 1.18528 0.81479 0.87429 0.79416 1.90855 1.70222 1.37289 1.43504 1.47996 1.20793 1.20471 1.43559 1.22488 1.02191 0.88446 0.89787 1.21985 0.99562 0.99166 0.95907 1.21524 0.98646 0.95031 0.99995 1.21987 1.01646 0.99263 0.93758 1.21208 0.91961 0.84170 0.96214 0.90672 1.22414 0.99202 0.92739 0.94887 0.89669 1.23242 0.99669 0.96829 0.95606 1.21614 0.91511 0.87517 0.95582 1.44879 1.61169 1.23306 1.05949 1.19531 1.25630 0.97333 0.94383 0.89905 1.25762 1.01841 1.02880 0.96104 1.70142 1.47713 1.39843 1.02571 0.84964 0.78169 0.78486 0.77021 1.21437 1.21836 1.18954 1.21605 0.97272 0.93571 0.86524 1.21717 0.92325 0.99704 0.93093 0.89309 0.88930 0.91389 0.79232 0.80723 0.88901 0.88496 0.92354 0.87909 0.90258 0.90708 0.92468 0.90707 0.89776 0.93767 0.91576 1.01319 0.94488 0.94920 0.96930 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.03 71.23 0.71 -0.32 16 2 C -0.14 -2.15 5.89 -19.81 -0.12 -2.27 16 3 C 0.11 1.70 10.85 84.71 0.92 2.62 16 4 N -0.50 -9.43 10.35 -194.75 -2.01 -11.44 16 5 C 0.12 2.37 8.57 85.03 0.73 3.10 16 6 C -0.18 -4.34 5.21 -19.99 -0.10 -4.45 16 7 C 0.54 15.85 7.01 86.79 0.61 16.46 16 8 O -0.54 -20.71 9.80 -3.88 -0.04 -20.75 16 9 N -0.60 -14.56 2.97 -797.58 -2.37 -16.93 16 10 C 0.09 1.41 4.85 86.51 0.42 1.83 16 11 C -0.13 -1.68 6.10 30.82 0.19 -1.50 16 12 C -0.11 -1.79 5.88 30.62 0.18 -1.61 16 13 C -0.13 -3.03 4.84 30.67 0.15 -2.88 16 14 C 0.17 4.82 2.48 44.97 0.11 4.93 16 15 H 0.08 2.17 7.89 -2.39 -0.02 2.15 16 16 C -0.07 -2.93 1.86 -9.61 -0.02 -2.94 16 17 H 0.09 3.74 5.95 -5.43 -0.03 3.71 16 18 C -0.12 -5.28 5.64 32.06 0.18 -5.10 16 19 C 0.16 9.37 5.89 86.93 0.51 9.88 16 20 N -0.63 -36.03 3.40 -691.58 -2.35 -38.38 16 21 C -0.24 -14.50 10.27 84.03 0.86 -13.64 16 22 H 0.08 4.73 7.83 -2.91 -0.02 4.71 16 23 C -0.07 -4.49 5.49 84.86 0.47 -4.03 16 24 N -0.95 -61.39 10.09 21.65 0.22 -61.17 16 25 Si 0.99 48.19 29.55 68.60 2.03 50.22 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 28 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 29 C 0.14 6.21 5.85 86.73 0.51 6.72 16 30 C -0.04 -0.91 9.46 22.73 0.21 -0.69 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.53 8.09 -2.39 -0.02 0.51 16 33 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 34 H 0.19 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.18 2.82 6.34 -2.91 -0.02 2.80 16 36 H 0.09 1.10 8.07 -2.39 -0.02 1.08 16 37 H 0.10 1.36 4.69 -2.39 -0.01 1.35 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.07 1.87 6.72 -2.39 -0.02 1.86 16 44 H 0.08 3.89 5.45 -13.94 -0.08 3.81 16 45 H 0.04 1.95 7.87 -2.39 -0.02 1.93 16 46 H 0.07 4.23 5.87 -2.38 -0.01 4.22 16 47 H -0.03 -1.99 8.14 -2.39 -0.02 -2.01 16 48 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 49 H 0.03 1.40 6.86 -2.39 -0.02 1.39 16 50 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -79.61 382.92 2.85 -76.76 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.85 Total: 15.55 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.52 Total: 6.14 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -6.51 Total: -127.93 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.04 Total: -20.75 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -79.61 2.85 -76.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.251 kcal (2) G-P(sol) polarization free energy of solvation -79.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds