Wall clock time and date at job start Wed Apr 1 2020 03:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38396 * 120.86101 * 2 1 4 4 C 1.38309 * 119.30907 * 179.97438 * 3 2 1 5 5 N 1.31950 * 121.08207 * 359.97438 * 4 3 2 6 6 C 1.31674 * 121.87876 * 359.77375 * 5 4 3 7 7 C 1.39564 * 120.56270 * 0.49195 * 6 5 4 8 8 C 1.47840 * 120.55676 * 179.77116 * 7 6 5 9 9 O 1.21553 * 119.99451 * 125.48769 * 8 7 6 10 10 N 1.34771 * 119.99984 * 305.48612 * 8 7 6 11 11 C 1.46918 * 120.63445 * 3.30376 * 10 8 7 12 12 C 1.53191 * 108.77719 * 233.62691 * 11 10 8 13 13 C 1.53033 * 109.33980 * 305.37955 * 12 11 10 14 14 C 1.53042 * 109.53830 * 61.31572 * 13 12 11 15 15 C 1.46931 * 120.62718 * 183.31774 * 10 8 7 16 16 H 1.08990 * 109.70539 * 246.22958 * 15 10 8 17 17 C 1.53001 * 109.58777 * 6.59144 * 15 10 8 18 18 H 1.09000 * 110.88497 * 42.26372 * 17 15 10 19 19 C 1.55154 * 110.99932 * 278.34292 * 17 15 10 20 20 C 1.54327 * 102.94107 * 206.42479 * 19 17 15 21 21 N 1.47019 * 107.27046 * 22.19081 * 20 19 17 22 22 C 1.36935 * 125.64685 * 181.02776 * 21 20 19 23 23 H 1.08006 * 119.99989 * 180.02562 * 22 21 20 24 24 C 1.38807 * 120.00470 * 0.03931 * 22 21 20 25 25 N 1.31622 * 119.99778 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00344 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46903 * 60.00052 * 26 24 22 28 28 H 1.48505 * 109.47098 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47339 * 300.00411 * 26 24 22 30 30 C 1.47427 * 108.70491 * 1.05993 * 21 20 19 31 31 H 1.09000 * 109.46888 * 264.95548 * 1 2 3 32 32 H 1.08999 * 109.47301 * 24.95171 * 1 2 3 33 33 H 1.08995 * 109.47763 * 144.95553 * 1 2 3 34 34 H 1.08005 * 120.34806 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.46085 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.71629 * 180.26923 * 6 5 4 37 37 H 1.09000 * 109.58793 * 353.41520 * 11 10 8 38 38 H 1.09000 * 109.59007 * 113.69477 * 11 10 8 39 39 H 1.09006 * 109.49546 * 65.31588 * 12 11 10 40 40 H 1.09000 * 109.49837 * 185.41176 * 12 11 10 41 41 H 1.09000 * 109.43613 * 301.31225 * 13 12 11 42 42 H 1.09007 * 109.48660 * 181.35050 * 13 12 11 43 43 H 1.09000 * 109.49628 * 178.71642 * 14 13 12 44 44 H 1.09000 * 109.49930 * 58.65355 * 14 13 12 45 45 H 1.08999 * 110.72484 * 324.78437 * 19 17 15 46 46 H 1.08996 * 110.72868 * 88.06105 * 19 17 15 47 47 H 1.09004 * 109.87928 * 262.77510 * 20 19 17 48 48 H 1.09002 * 110.01335 * 141.68142 * 20 19 17 49 49 H 0.97001 * 119.99947 * 179.97438 * 25 24 22 50 50 H 1.08999 * 110.36781 * 217.03783 * 30 21 20 51 51 H 1.09001 * 110.36681 * 94.71074 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6196 -1.1537 0.0065 7 6 2.2248 -1.2018 0.0006 8 6 1.5175 -2.5000 0.0011 9 8 0.6864 -2.7388 0.8553 10 7 1.7942 -3.4185 -0.9456 11 6 2.8466 -3.1738 -1.9411 12 6 2.2546 -3.3637 -3.3412 13 6 1.6101 -4.7485 -3.4354 14 6 0.4769 -4.8563 -2.4125 15 6 1.0488 -4.6834 -1.0018 16 1 1.7167 -5.5140 -0.7739 17 6 -0.0944 -4.6507 0.0146 18 1 -0.5944 -3.6822 0.0060 19 6 0.4162 -5.0013 1.4371 20 6 -0.8399 -5.5797 2.1224 21 7 -1.7448 -6.0393 1.0587 22 6 -2.9799 -6.5992 1.2484 23 1 -3.5703 -6.9060 0.3976 24 6 -3.4735 -6.7724 2.5342 25 7 -2.7540 -6.3988 3.5711 26 14 -5.1587 -7.5356 2.7929 27 1 -5.1768 -8.9033 2.2145 28 1 -5.4505 -7.6099 4.2471 29 1 -6.1882 -6.7012 2.1228 30 6 -1.1019 -5.7982 -0.2459 31 1 -0.3633 -0.0904 1.0237 32 1 -0.3634 0.9317 -0.4335 33 1 -0.3634 -0.8413 -0.5900 34 1 1.6967 2.1345 0.0004 35 1 4.1559 2.0762 0.0010 36 1 4.1870 -2.0726 0.0116 37 1 3.2185 -2.1546 -1.8368 38 1 3.6643 -3.8784 -1.7892 39 1 1.5001 -2.5985 -3.5240 40 1 3.0465 -3.2797 -4.0855 41 1 2.3598 -5.5123 -3.2287 42 1 1.2091 -4.8955 -4.4383 43 1 0.0035 -5.8346 -2.4957 44 1 -0.2613 -4.0775 -2.6038 45 1 1.2080 -5.7488 1.3894 46 1 0.7603 -4.1061 1.9550 47 1 -1.3277 -4.8062 2.7157 48 1 -0.5634 -6.4180 2.7618 49 1 -3.0990 -6.5195 4.4696 50 1 -1.8436 -5.4916 -0.9834 51 1 -0.5788 -6.6933 -0.5822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039208532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:27 Heat of formation + Delta-G solvation = 53.986993 kcal Electronic energy + Delta-G solvation = -31816.684810 eV Core-core repulsion = 27910.635133 eV Total energy + Delta-G solvation = -3906.049677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.24160 -39.83913 -37.41212 -36.86300 -34.10365 -33.39407 -32.83791 -31.50701 -30.83520 -28.98584 -28.13687 -27.18094 -25.56312 -24.44775 -24.01189 -23.09540 -22.20148 -21.12419 -19.75423 -19.61394 -19.39407 -17.33315 -16.80872 -16.66684 -16.53576 -15.97703 -15.25516 -15.05182 -14.63121 -14.50993 -14.25900 -14.12021 -13.97871 -13.76031 -13.49775 -13.18139 -13.08240 -12.97068 -12.89743 -12.69738 -12.17466 -12.04158 -11.95128 -11.82317 -11.60811 -11.30257 -11.09973 -10.89759 -10.78068 -10.70449 -10.60802 -10.10594 -9.97907 -9.85015 -9.73067 -9.57190 -9.54101 -9.44395 -9.29729 -8.77648 -8.43328 -8.33879 -6.64339 -5.55781 -2.88818 0.60735 0.95219 2.68074 2.93026 3.47702 3.51083 3.51607 3.53174 4.09100 4.34262 4.45725 4.47608 4.60452 4.61523 4.71144 4.80101 4.83518 4.98930 5.15176 5.20444 5.24487 5.25998 5.38633 5.41943 5.51027 5.55744 5.61094 5.62565 5.64145 5.75427 5.76005 5.87376 5.92065 6.00162 6.03538 6.07252 6.10803 6.15775 6.30723 6.35366 6.39831 6.54249 6.63957 6.78424 6.98015 7.13501 7.31426 7.42982 7.63194 7.72189 7.92111 8.04634 8.33413 8.44372 9.37899 9.99052 10.67542 11.55120 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.003347 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.428976 B = 8363.631777 C = 9545.311382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.006 3.994 3 C -0.179 4.179 4 C 0.112 3.888 5 N -0.491 5.491 6 C 0.130 3.870 7 C -0.175 4.175 8 C 0.546 3.454 9 O -0.483 6.483 10 N -0.600 5.600 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.131 4.131 15 C 0.161 3.839 16 H 0.071 0.929 17 C -0.091 4.091 18 H 0.100 0.900 19 C -0.132 4.132 20 C 0.181 3.819 21 N -0.605 5.605 22 C -0.226 4.226 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.920 5.920 26 Si 0.909 3.091 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.139 3.861 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.036 0.964 46 H 0.087 0.913 47 H 0.042 0.958 48 H 0.034 0.966 49 H 0.250 0.750 50 H 0.032 0.968 51 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.040 14.021 -14.279 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.002 4.002 3 C -0.199 4.199 4 C -0.044 4.044 5 N -0.200 5.200 6 C -0.028 4.028 7 C -0.180 4.180 8 C 0.333 3.667 9 O -0.358 6.358 10 N -0.334 5.334 11 C -0.022 4.022 12 C -0.171 4.171 13 C -0.158 4.158 14 C -0.169 4.169 15 C 0.058 3.942 16 H 0.089 0.911 17 C -0.111 4.111 18 H 0.117 0.883 19 C -0.170 4.170 20 C 0.057 3.943 21 N -0.331 5.331 22 C -0.354 4.354 23 H 0.092 0.908 24 C -0.206 4.206 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.012 3.988 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.050 0.950 51 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 15.347 13.834 -13.611 24.742 hybrid contribution -1.657 -0.443 0.138 1.721 sum 13.690 13.391 -13.473 23.415 Atomic orbital electron populations 1.20895 0.89319 1.03074 1.04335 1.20394 0.97219 0.91408 0.91208 1.22023 0.95572 0.98578 1.03700 1.22881 0.91728 0.96359 0.93474 1.67695 1.40780 0.98276 1.13275 1.22959 0.90273 0.96537 0.93053 1.21061 0.95495 0.94809 1.06628 1.18115 0.83660 0.83023 0.81928 1.90944 1.31950 1.76980 1.35877 1.48002 1.36943 1.18445 1.29995 1.21895 0.90075 1.02085 0.88135 1.21900 1.00697 0.98342 0.96209 1.21542 0.98241 0.96571 0.99410 1.22026 0.97859 1.03268 0.93792 1.21381 0.93316 0.83971 0.95525 0.91096 1.22736 0.94239 1.00269 0.93808 0.88255 1.23246 0.98445 0.99428 0.95849 1.21091 0.86625 0.96943 0.89686 1.44477 1.16644 1.72004 0.99961 1.19004 0.91711 1.32489 0.92237 0.90779 1.24793 0.98526 1.01752 0.95548 1.70002 1.36743 1.52604 0.97433 0.86241 0.84021 0.79004 0.76730 1.21321 1.21680 1.21305 1.21635 0.93474 0.94019 0.89673 0.89130 0.91073 0.90671 0.84262 0.82470 0.82380 0.89870 0.91116 0.91604 0.90947 0.91772 0.91734 0.89995 0.91487 0.94492 0.89555 0.93950 0.94799 0.93924 0.94968 0.97160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.12 36.00 0.33 -0.96 16 2 C 0.01 0.07 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.55 9.79 -39.50 -0.39 -1.94 16 4 C 0.11 0.98 11.17 -17.47 -0.20 0.78 16 5 N -0.49 -5.29 10.35 -12.91 -0.13 -5.42 16 6 C 0.13 1.40 8.64 -17.12 -0.15 1.25 16 7 C -0.17 -2.10 4.86 -104.82 -0.51 -2.61 16 8 C 0.55 7.74 6.02 -12.33 -0.07 7.67 16 9 O -0.48 -8.69 9.18 5.32 0.05 -8.65 16 10 N -0.60 -7.44 2.97 -166.33 -0.49 -7.93 16 11 C 0.10 0.91 5.56 -3.72 -0.02 0.89 16 12 C -0.13 -1.08 6.08 -26.62 -0.16 -1.25 16 13 C -0.12 -1.09 5.89 -26.69 -0.16 -1.24 16 14 C -0.13 -1.58 4.77 -26.61 -0.13 -1.70 16 15 C 0.16 2.27 2.64 -67.59 -0.18 2.10 16 16 H 0.07 1.02 7.79 -51.93 -0.40 0.61 16 17 C -0.09 -1.72 1.94 -88.47 -0.17 -1.89 16 18 H 0.10 2.06 5.97 -51.93 -0.31 1.75 16 19 C -0.13 -2.81 5.67 -24.90 -0.14 -2.95 16 20 C 0.18 4.84 5.38 -3.06 -0.02 4.83 16 21 N -0.60 -16.54 3.39 -170.07 -0.58 -17.11 16 22 C -0.23 -6.64 10.28 -15.06 -0.15 -6.79 16 23 H 0.07 2.08 7.83 -52.48 -0.41 1.67 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -28.57 10.31 55.49 0.57 -28.00 16 26 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 30 C 0.14 3.02 5.31 -2.53 -0.01 3.00 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.07 0.93 7.28 -51.93 -0.38 0.55 16 34 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.16 1.47 7.44 -52.49 -0.39 1.08 16 37 H 0.08 0.71 4.81 -51.93 -0.25 0.46 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 43 H 0.08 1.02 7.00 -51.93 -0.36 0.66 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.74 7.79 -51.93 -0.40 0.34 16 46 H 0.09 1.88 5.47 -52.54 -0.29 1.59 16 47 H 0.04 1.27 7.38 -51.93 -0.38 0.89 16 48 H 0.03 0.99 7.50 -51.93 -0.39 0.60 16 49 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 51 H 0.01 0.23 7.65 -51.93 -0.40 -0.17 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -34.50 383.15 -10.83 -45.33 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.15 Total: -0.21 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -2.84 Total: -1.76 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.63 Total: -58.47 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.05 Total: -8.65 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.50 -10.83 -45.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.315 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds