Wall clock time and date at job start Wed Apr 1 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38398 * 120.85542 * 2 1 4 4 C 1.38307 * 119.30615 * 180.26068 * 3 2 1 5 5 N 1.31955 * 121.08021 * 359.75685 * 4 3 2 6 6 C 1.31663 * 121.88299 * 0.02562 * 5 4 3 7 7 C 1.39565 * 120.56088 * 359.97264 * 6 5 4 8 8 C 1.47841 * 120.55621 * 180.02562 * 7 6 5 9 9 O 1.21556 * 119.99740 * 233.80352 * 8 7 6 10 10 N 1.34776 * 120.00297 * 53.80954 * 8 7 6 11 11 C 1.46925 * 120.63004 * 356.73229 * 10 8 7 12 12 C 1.53193 * 108.77328 * 126.11785 * 11 10 8 13 13 C 1.53045 * 109.30958 * 54.64160 * 12 11 10 14 14 C 1.53044 * 109.53507 * 298.62940 * 13 12 11 15 15 C 1.46932 * 120.62992 * 176.45971 * 10 8 7 16 16 H 1.09003 * 109.58286 * 114.09507 * 15 10 8 17 17 C 1.52993 * 109.58471 * 353.66633 * 15 10 8 18 18 H 1.08988 * 110.64633 * 318.25812 * 17 15 10 19 19 C 1.55154 * 110.72211 * 81.40660 * 17 15 10 20 20 C 1.55120 * 101.48864 * 153.72961 * 19 17 15 21 21 N 1.47421 * 104.94118 * 323.21957 * 20 19 17 22 22 C 1.36935 * 125.64558 * 204.03715 * 21 20 19 23 23 H 1.08008 * 119.99964 * 156.67581 * 22 21 20 24 24 C 1.38812 * 120.00373 * 336.66993 * 22 21 20 25 25 N 1.31618 * 120.00069 * 159.63536 * 24 22 21 26 26 Si 1.86796 * 119.99818 * 339.64083 * 24 22 21 27 27 H 1.48506 * 109.47384 * 84.27298 * 26 24 22 28 28 H 1.48502 * 109.47152 * 204.26789 * 26 24 22 29 29 H 1.48498 * 109.47448 * 324.27412 * 26 24 22 30 30 C 1.47016 * 108.70385 * 24.00345 * 21 20 19 31 31 H 1.08996 * 109.47281 * 272.84117 * 1 2 3 32 32 H 1.08997 * 109.47405 * 32.84456 * 1 2 3 33 33 H 1.09000 * 109.46630 * 152.84310 * 1 2 3 34 34 H 1.08004 * 120.34802 * 359.97438 * 3 2 1 35 35 H 1.07994 * 119.46348 * 179.74701 * 4 3 2 36 36 H 1.07994 * 119.72326 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.58985 * 245.90637 * 11 10 8 38 38 H 1.09005 * 109.58791 * 6.33887 * 11 10 8 39 39 H 1.09005 * 109.49864 * 174.58629 * 12 11 10 40 40 H 1.08996 * 109.50358 * 294.65856 * 12 11 10 41 41 H 1.08999 * 109.46474 * 58.65180 * 13 12 11 42 42 H 1.08998 * 109.45832 * 178.61379 * 13 12 11 43 43 H 1.09001 * 109.49161 * 181.31601 * 14 13 12 44 44 H 1.09001 * 109.49885 * 301.38315 * 14 13 12 45 45 H 1.09001 * 111.00170 * 271.93631 * 19 17 15 46 46 H 1.09007 * 111.00678 * 35.78622 * 19 17 15 47 47 H 1.09001 * 110.41517 * 204.29161 * 20 19 17 48 48 H 1.08996 * 110.20458 * 82.04653 * 20 19 17 49 49 H 0.97003 * 120.00160 * 179.97438 * 25 24 22 50 50 H 1.08994 * 109.88270 * 239.52084 * 30 21 20 51 51 H 1.08997 * 109.88389 * 118.35523 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0055 5 7 4.2498 0.0026 -0.0059 6 6 3.6198 -1.1536 -0.0017 7 6 2.2250 -1.2017 0.0040 8 6 1.5178 -2.4999 0.0094 9 8 0.6777 -2.7378 -0.8363 10 7 1.8043 -3.4196 0.9520 11 6 2.8666 -3.1758 1.9372 12 6 2.2872 -3.3617 3.3431 13 6 1.6408 -4.7451 3.4452 14 6 0.4973 -4.8516 2.4336 15 6 1.0563 -4.6826 1.0174 16 1 1.7222 -5.5140 0.7858 17 6 -0.0960 -4.6489 0.0117 18 1 -0.5848 -3.6747 0.0198 19 6 0.4086 -4.9980 -1.4134 20 6 -0.8774 -5.5708 -2.0648 21 7 -1.5505 -6.3163 -0.9857 22 6 -2.4366 -7.3458 -1.1593 23 1 -2.5899 -8.0655 -0.3687 24 6 -3.1378 -7.4644 -2.3514 25 7 -3.6662 -8.6208 -2.6918 26 14 -3.3312 -5.9829 -3.4726 27 1 -2.1312 -5.8571 -4.3383 28 1 -4.5373 -6.1583 -4.3210 29 1 -3.4788 -4.7554 -2.6500 30 6 -1.1122 -5.7720 0.3078 31 1 -0.3633 0.0509 1.0263 32 1 -0.3634 0.8633 -0.5573 33 1 -0.3632 -0.9144 -0.4691 34 1 1.6966 2.1346 -0.0004 35 1 4.1558 2.0763 -0.0097 36 1 4.1872 -2.0725 -0.0026 37 1 3.6800 -3.8844 1.7806 38 1 3.2400 -2.1576 1.8277 39 1 3.0862 -3.2782 4.0799 40 1 1.5367 -2.5941 3.5318 41 1 2.3864 -5.5111 3.2324 42 1 1.2493 -4.8895 4.4522 43 1 0.0224 -5.8286 2.5230 44 1 -0.2370 -4.0706 2.6310 45 1 0.7504 -4.1049 -1.9365 46 1 1.1950 -5.7519 -1.3756 47 1 -0.6218 -6.2403 -2.8861 48 1 -1.5132 -4.7596 -2.4193 49 1 -4.1566 -8.7036 -3.5247 50 1 -0.6370 -6.5557 0.8979 51 1 -1.9672 -5.3654 0.8478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039208533.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:31 Heat of formation + Delta-G solvation = 57.161393 kcal Electronic energy + Delta-G solvation = -31911.120881 eV Core-core repulsion = 28005.208857 eV Total energy + Delta-G solvation = -3905.912024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.40074 -39.98237 -37.59885 -37.18942 -34.19228 -33.51994 -32.92249 -31.71213 -31.10746 -29.37989 -28.24616 -27.69998 -25.77344 -24.43511 -24.12665 -23.08366 -22.26492 -21.39569 -20.34657 -19.71834 -19.51478 -17.49871 -16.90317 -16.75294 -16.61578 -16.13337 -15.43877 -15.26596 -14.85520 -14.67836 -14.52910 -14.28961 -14.20460 -13.81384 -13.42495 -13.23666 -13.18304 -13.12993 -12.99496 -12.79872 -12.70058 -12.50721 -12.12036 -11.96994 -11.55499 -11.53798 -11.34816 -11.13178 -10.99219 -10.78548 -10.66321 -10.27970 -10.21643 -9.91286 -9.84208 -9.80409 -9.73220 -9.43668 -9.31465 -8.83320 -8.56156 -8.50608 -6.83070 -5.85039 -3.16565 0.49839 0.85199 2.51404 2.79796 3.40752 3.47157 3.57080 3.63876 3.98883 4.23263 4.35797 4.38528 4.51966 4.63391 4.66734 4.70740 4.74565 4.88414 5.03503 5.08843 5.11949 5.19821 5.25970 5.29145 5.31321 5.35583 5.42041 5.47672 5.53230 5.60336 5.66098 5.74519 5.77604 5.82976 5.88637 5.92573 5.95587 6.02789 6.09494 6.21385 6.25818 6.32252 6.36408 6.60152 6.69741 6.83347 6.87719 7.02724 7.13402 7.28232 7.53773 7.91628 8.15347 8.42900 8.97130 9.81197 10.35713 11.31740 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.003671 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.795927 B = 7626.254688 C = 8974.913620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.008 3.992 3 C -0.179 4.179 4 C 0.113 3.887 5 N -0.491 5.491 6 C 0.131 3.869 7 C -0.177 4.177 8 C 0.551 3.449 9 O -0.494 6.494 10 N -0.598 5.598 11 C 0.100 3.900 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.134 4.134 15 C 0.161 3.839 16 H 0.075 0.925 17 C -0.093 4.093 18 H 0.101 0.899 19 C -0.119 4.119 20 C 0.115 3.885 21 N -0.610 5.610 22 C -0.238 4.238 23 H 0.088 0.912 24 C 0.022 3.978 25 N -0.914 5.914 26 Si 0.887 3.113 27 H -0.286 1.286 28 H -0.305 1.305 29 H -0.276 1.276 30 C 0.137 3.863 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.028 0.972 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.899 19.691 12.755 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C -0.199 4.199 4 C -0.043 4.043 5 N -0.200 5.200 6 C -0.027 4.027 7 C -0.182 4.182 8 C 0.338 3.662 9 O -0.370 6.370 10 N -0.331 5.331 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.158 4.158 14 C -0.172 4.172 15 C 0.058 3.942 16 H 0.093 0.907 17 C -0.112 4.112 18 H 0.119 0.881 19 C -0.156 4.156 20 C -0.010 4.010 21 N -0.337 5.337 22 C -0.366 4.366 23 H 0.105 0.895 24 C -0.176 4.176 25 N -0.558 5.558 26 Si 0.717 3.283 27 H -0.213 1.213 28 H -0.233 1.233 29 H -0.202 1.202 30 C 0.011 3.989 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.040 0.960 49 H 0.072 0.928 50 H 0.046 0.954 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 17.190 19.390 12.181 28.633 hybrid contribution -1.031 0.826 -0.622 1.460 sum 16.159 20.216 11.559 28.344 Atomic orbital electron populations 1.21103 0.89510 1.05522 1.03194 1.20372 0.97218 0.91357 0.91116 1.22034 0.95587 0.98646 1.03626 1.22902 0.91732 0.96386 0.93247 1.67703 1.40766 0.98270 1.13217 1.22972 0.90225 0.96593 0.92937 1.21002 0.95507 0.94723 1.07002 1.18109 0.83444 0.82977 0.81630 1.90860 1.32239 1.77160 1.36749 1.48038 1.36181 1.18416 1.30463 1.21945 0.89852 1.02196 0.88289 1.21910 1.00788 0.98391 0.96096 1.21543 0.98155 0.96548 0.99536 1.22073 0.97930 1.03581 0.93593 1.21405 0.93139 0.84097 0.95522 0.90678 1.22611 0.94470 1.00179 0.93929 0.88087 1.23182 0.97087 0.99662 0.95704 1.21940 0.92012 0.94401 0.92609 1.44789 1.50036 1.38853 1.00012 1.18636 1.15140 1.00270 1.02506 0.89456 1.25095 0.98065 0.96778 0.97705 1.69827 1.39507 1.22554 1.23917 0.86879 0.76347 0.84576 0.80459 1.21250 1.23269 1.20236 1.21514 0.94744 0.93204 0.89471 0.90388 0.90607 0.88507 0.84236 0.82407 0.82314 0.90912 0.89751 0.90837 0.91598 0.91663 0.91599 0.89607 0.91424 0.89004 0.93035 0.93200 0.96043 0.92849 0.95380 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.72 36.01 0.35 -0.98 16 2 C 0.01 0.08 5.95 -103.91 -0.62 -0.54 16 3 C -0.18 -1.41 9.81 -39.50 -0.39 -1.80 16 4 C 0.11 0.91 11.17 -17.47 -0.20 0.71 16 5 N -0.49 -4.90 10.35 -12.91 -0.13 -5.03 16 6 C 0.13 1.29 8.62 -17.13 -0.15 1.14 16 7 C -0.18 -1.94 4.88 -104.82 -0.51 -2.45 16 8 C 0.55 7.08 6.42 -12.33 -0.08 7.00 16 9 O -0.49 -7.99 8.03 5.32 0.04 -7.95 16 10 N -0.60 -6.74 2.97 -166.32 -0.49 -7.23 16 11 C 0.10 0.81 5.53 -3.71 -0.02 0.79 16 12 C -0.13 -0.99 6.08 -26.61 -0.16 -1.15 16 13 C -0.12 -1.02 5.88 -26.69 -0.16 -1.18 16 14 C -0.13 -1.51 4.74 -26.61 -0.13 -1.63 16 15 C 0.16 2.11 2.58 -67.60 -0.17 1.93 16 16 H 0.08 1.00 7.79 -51.93 -0.40 0.60 16 17 C -0.09 -1.61 1.91 -88.79 -0.17 -1.78 16 18 H 0.10 1.87 5.91 -51.95 -0.31 1.57 16 19 C -0.12 -2.29 5.78 -24.47 -0.14 -2.43 16 20 C 0.12 2.78 4.72 -2.42 -0.01 2.76 16 21 N -0.61 -15.76 3.15 -169.95 -0.53 -16.29 16 22 C -0.24 -7.09 10.56 -15.06 -0.16 -7.25 16 23 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 24 C 0.02 0.67 5.45 -17.43 -0.09 0.57 16 25 N -0.91 -29.28 13.97 55.49 0.78 -28.51 16 26 Si 0.89 24.23 24.31 -169.99 -4.13 20.10 16 27 H -0.29 -7.61 6.63 56.52 0.37 -7.23 16 28 H -0.30 -8.31 7.11 56.52 0.40 -7.90 16 29 H -0.28 -7.56 6.73 56.52 0.38 -7.18 16 30 C 0.14 2.83 5.85 -3.07 -0.02 2.81 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.10 1.23 5.75 -51.93 -0.30 0.93 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.16 1.32 7.38 -52.49 -0.39 0.93 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.64 4.76 -51.93 -0.25 0.40 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.04 6.51 -51.93 -0.34 0.70 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.76 5.48 -52.47 -0.29 1.47 16 46 H 0.05 0.96 7.81 -51.92 -0.41 0.55 16 47 H 0.05 1.27 7.07 -51.93 -0.37 0.91 16 48 H 0.02 0.56 5.45 -51.93 -0.28 0.27 16 49 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 50 H 0.03 0.56 6.56 -51.93 -0.34 0.22 16 51 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -35.00 375.12 -9.57 -44.57 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.92 Total: -1.84 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.82 Total: -3.48 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.39 Total: -57.06 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.04 Total: -7.95 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.13 Total: 20.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.00 -9.57 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208533.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.735 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds