Wall clock time and date at job start Wed Apr 1 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38396 * 120.85648 * 2 1 4 4 C 1.38311 * 119.30205 * 180.02562 * 3 2 1 5 5 N 1.31952 * 121.08389 * 359.97438 * 4 3 2 6 6 C 1.31667 * 121.87673 * 359.77639 * 5 4 3 7 7 C 1.39557 * 120.56813 * 0.48839 * 6 5 4 8 8 C 1.47839 * 120.56154 * 179.77463 * 7 6 5 9 9 O 1.21556 * 119.99770 * 124.54701 * 8 7 6 10 10 N 1.34769 * 120.00170 * 304.55200 * 8 7 6 11 11 C 1.46928 * 120.63158 * 1.25691 * 10 8 7 12 12 C 1.53192 * 108.77671 * 126.41809 * 11 10 8 13 13 C 1.53039 * 109.31410 * 54.63215 * 12 11 10 14 14 C 1.53042 * 109.53883 * 298.63735 * 13 12 11 15 15 C 1.46934 * 120.63292 * 181.28388 * 10 8 7 16 16 H 1.08997 * 109.58876 * 113.65136 * 15 10 8 17 17 C 1.53000 * 109.58295 * 353.36956 * 15 10 8 18 18 H 1.08998 * 110.92011 * 55.34005 * 17 15 10 19 19 C 1.55156 * 111.00626 * 291.43408 * 17 15 10 20 20 C 1.54319 * 102.94420 * 206.42371 * 19 17 15 21 21 N 1.47031 * 107.40208 * 22.11983 * 20 19 17 22 22 C 1.36932 * 125.64787 * 181.10226 * 21 20 19 23 23 H 1.08006 * 119.99946 * 180.02562 * 22 21 20 24 24 C 1.38814 * 119.99988 * 0.02562 * 22 21 20 25 25 N 1.31615 * 120.00302 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99738 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47520 * 89.99898 * 26 24 22 28 28 H 1.48499 * 109.46807 * 210.00148 * 26 24 22 29 29 H 1.48498 * 109.47252 * 329.99875 * 26 24 22 30 30 C 1.47743 * 108.52579 * 1.17691 * 21 20 19 31 31 H 1.08999 * 109.46583 * 264.92327 * 1 2 3 32 32 H 1.09000 * 109.47409 * 24.92051 * 1 2 3 33 33 H 1.08992 * 109.47483 * 144.92516 * 1 2 3 34 34 H 1.07998 * 120.34469 * 0.02562 * 3 2 1 35 35 H 1.07994 * 119.45461 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.71548 * 180.26365 * 6 5 4 37 37 H 1.09002 * 109.58448 * 246.20238 * 11 10 8 38 38 H 1.09001 * 109.58127 * 6.48540 * 11 10 8 39 39 H 1.08996 * 109.49959 * 174.59091 * 12 11 10 40 40 H 1.09007 * 109.49042 * 294.65279 * 12 11 10 41 41 H 1.08999 * 109.45841 * 58.66210 * 13 12 11 42 42 H 1.09000 * 109.46032 * 178.61566 * 13 12 11 43 43 H 1.08996 * 109.49596 * 301.41366 * 14 13 12 44 44 H 1.09002 * 109.49118 * 181.31394 * 14 13 12 45 45 H 1.09004 * 110.71631 * 88.06286 * 19 17 15 46 46 H 1.08996 * 110.72204 * 324.79093 * 19 17 15 47 47 H 1.09003 * 109.88180 * 141.61211 * 20 19 17 48 48 H 1.08999 * 109.88896 * 262.62028 * 20 19 17 49 49 H 0.96997 * 119.99866 * 180.02562 * 25 24 22 50 50 H 1.08999 * 110.29160 * 216.94778 * 30 21 20 51 51 H 1.09004 * 110.52483 * 94.68054 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1881 0.0000 4 6 3.5995 1.1506 -0.0005 5 7 4.2498 0.0024 -0.0005 6 6 3.6197 -1.1536 0.0043 7 6 2.2250 -1.2018 -0.0005 8 6 1.5176 -2.4999 -0.0001 9 8 0.6995 -2.7460 0.8647 10 7 1.7798 -3.4106 -0.9583 11 6 2.7858 -3.1389 -1.9941 12 6 3.7935 -4.2924 -2.0175 13 6 3.0450 -5.6148 -2.1997 14 6 2.0918 -5.8299 -1.0219 15 6 1.0647 -4.6938 -0.9875 16 1 0.4345 -4.7409 -1.8756 17 6 0.1962 -4.8255 0.2653 18 1 -0.4797 -3.9757 0.3613 19 6 1.0727 -4.9852 1.5355 20 6 0.1469 -5.7565 2.4996 21 7 -0.8626 -6.4458 1.6826 22 6 -1.8834 -7.2220 2.1627 23 1 -2.5760 -7.6879 1.4772 24 6 -2.0281 -7.4103 3.5304 25 7 -1.1844 -6.8422 4.3657 26 14 -3.4202 -8.4698 4.1852 27 1 -2.9626 -9.8785 4.2909 28 1 -3.8267 -7.9793 5.5266 29 1 -4.5781 -8.3938 3.2586 30 6 -0.5886 -6.1611 0.2590 31 1 -0.3632 -0.0909 1.0237 32 1 -0.3634 0.9320 -0.4330 33 1 -0.3634 -0.8410 -0.5905 34 1 1.6966 2.1345 0.0004 35 1 4.1558 2.0762 -0.0001 36 1 4.1870 -2.0726 0.0085 37 1 2.2979 -3.0602 -2.9657 38 1 3.3008 -2.2054 -1.7672 39 1 4.4892 -4.1511 -2.8445 40 1 4.3451 -4.3126 -1.0775 41 1 2.4744 -5.5841 -3.1279 42 1 3.7617 -6.4350 -2.2413 43 1 2.6590 -5.8360 -0.0912 44 1 1.5762 -6.7829 -1.1407 45 1 1.3341 -4.0110 1.9486 46 1 1.9690 -5.5649 1.3151 47 1 0.7263 -6.4856 3.0660 48 1 -0.3407 -5.0602 3.1818 49 1 -1.2854 -6.9741 5.3214 50 1 -1.5231 -6.0494 -0.2909 51 1 0.0164 -6.9545 -0.1799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039208534.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:36 Heat of formation + Delta-G solvation = 61.050514 kcal Electronic energy + Delta-G solvation = -31930.544993 eV Core-core repulsion = 28024.801614 eV Total energy + Delta-G solvation = -3905.743379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.28585 -39.88604 -37.44747 -36.79619 -34.10769 -33.38933 -32.79033 -31.53835 -30.70677 -28.76173 -28.17969 -27.38772 -25.53116 -24.30118 -24.08732 -23.19513 -22.31876 -21.06347 -20.20368 -19.74888 -18.67906 -17.17588 -16.93286 -16.69372 -16.52794 -15.78866 -15.14613 -15.01212 -14.80733 -14.53917 -14.44998 -14.24514 -13.85223 -13.72088 -13.62292 -13.32216 -13.04059 -12.92078 -12.78955 -12.70768 -12.27812 -12.12081 -11.90520 -11.74268 -11.49044 -11.24610 -11.03397 -10.91146 -10.74664 -10.58120 -10.51234 -10.07914 -9.94333 -9.84302 -9.73736 -9.61419 -9.54492 -9.48379 -9.30220 -8.74147 -8.41262 -8.24627 -6.63302 -5.55703 -2.88311 0.61170 0.95205 2.69735 2.93094 3.47488 3.51107 3.51880 3.54331 4.10793 4.33958 4.44802 4.47782 4.61605 4.63636 4.73900 4.82645 4.86199 5.05219 5.16510 5.23084 5.24094 5.26140 5.41039 5.42009 5.47491 5.51179 5.62401 5.63093 5.66477 5.79909 5.82436 5.88014 5.90309 6.00453 6.04242 6.05595 6.13318 6.20976 6.26477 6.35591 6.46859 6.63685 6.68060 6.81684 6.97914 7.09895 7.33567 7.45461 7.64051 7.72633 7.91290 8.04605 8.30741 8.43777 9.38052 9.98978 10.67982 11.55334 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003388 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.177266 B = 8261.987407 C = 9487.701185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.004 3.996 3 C -0.179 4.179 4 C 0.111 3.889 5 N -0.490 5.490 6 C 0.131 3.869 7 C -0.174 4.174 8 C 0.547 3.453 9 O -0.483 6.483 10 N -0.599 5.599 11 C 0.101 3.899 12 C -0.134 4.134 13 C -0.119 4.119 14 C -0.140 4.140 15 C 0.162 3.838 16 H 0.069 0.931 17 C -0.095 4.095 18 H 0.106 0.894 19 C -0.137 4.137 20 C 0.182 3.818 21 N -0.604 5.604 22 C -0.224 4.224 23 H 0.075 0.925 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.134 3.866 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.032 0.968 48 H 0.042 0.958 49 H 0.250 0.750 50 H 0.031 0.969 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.684 15.057 -16.168 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.004 4.004 3 C -0.199 4.199 4 C -0.045 4.045 5 N -0.199 5.199 6 C -0.027 4.027 7 C -0.180 4.180 8 C 0.334 3.666 9 O -0.358 6.358 10 N -0.333 5.333 11 C -0.022 4.022 12 C -0.173 4.173 13 C -0.157 4.157 14 C -0.178 4.178 15 C 0.059 3.941 16 H 0.087 0.913 17 C -0.114 4.114 18 H 0.124 0.876 19 C -0.175 4.175 20 C 0.058 3.942 21 N -0.330 5.330 22 C -0.353 4.353 23 H 0.093 0.907 24 C -0.207 4.207 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.007 3.993 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.049 0.951 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 12.043 14.863 -15.483 24.611 hybrid contribution -1.465 -0.616 0.389 1.636 sum 10.578 14.247 -15.094 23.297 Atomic orbital electron populations 1.20890 0.89403 1.03019 1.04260 1.20386 0.97180 0.91437 0.91423 1.22015 0.95581 0.98546 1.03720 1.22886 0.91730 0.96372 0.93466 1.67701 1.40766 0.98268 1.13207 1.22944 0.90279 0.96526 0.92951 1.21056 0.95518 0.94773 1.06607 1.18044 0.83503 0.83123 0.81935 1.90920 1.32625 1.76614 1.35613 1.47995 1.40009 1.17220 1.28029 1.21881 0.89969 0.98925 0.91452 1.21921 0.97674 0.95115 1.02562 1.21534 0.98538 0.96831 0.98755 1.22192 0.97605 0.98910 0.99056 1.21260 0.92282 0.80958 0.99591 0.91260 1.22862 0.97442 0.99079 0.92063 0.87595 1.23353 0.97438 1.00239 0.96467 1.21061 0.88547 0.93665 0.90975 1.44517 1.31795 1.57220 0.99430 1.19053 1.03913 1.21598 0.90690 0.90718 1.24788 0.99123 1.00831 0.95927 1.70009 1.37698 1.47512 1.01596 0.86157 0.81684 0.79934 0.78235 1.21781 1.21786 1.20813 1.21763 0.96137 0.93324 0.88087 0.89187 0.91063 0.90735 0.84268 0.82459 0.82337 0.91473 0.89780 0.90882 0.91363 0.92017 0.91734 0.90314 0.90019 0.90339 0.93572 0.94933 0.94008 0.93998 0.95110 0.96696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.15 36.01 0.33 -0.90 16 2 C 0.00 0.04 5.95 -103.91 -0.62 -0.57 16 3 C -0.18 -1.54 9.79 -39.50 -0.39 -1.93 16 4 C 0.11 0.98 11.17 -17.47 -0.20 0.79 16 5 N -0.49 -5.38 10.35 -12.91 -0.13 -5.51 16 6 C 0.13 1.45 8.60 -17.13 -0.15 1.31 16 7 C -0.17 -2.11 4.91 -104.82 -0.51 -2.63 16 8 C 0.55 7.79 5.70 -12.34 -0.07 7.72 16 9 O -0.48 -8.73 9.45 5.32 0.05 -8.68 16 10 N -0.60 -7.44 2.96 -166.32 -0.49 -7.93 16 11 C 0.10 0.92 5.90 -3.71 -0.02 0.90 16 12 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 13 C -0.12 -1.13 5.88 -26.69 -0.16 -1.28 16 14 C -0.14 -1.80 4.72 -26.61 -0.13 -1.92 16 15 C 0.16 2.27 2.80 -67.60 -0.19 2.08 16 16 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.10 -1.79 2.12 -88.47 -0.19 -1.98 16 18 H 0.11 2.23 5.96 -52.13 -0.31 1.92 16 19 C -0.14 -2.87 5.32 -24.90 -0.13 -3.00 16 20 C 0.18 4.85 5.37 -3.06 -0.02 4.83 16 21 N -0.60 -16.46 3.41 -169.81 -0.58 -17.04 16 22 C -0.22 -6.59 10.29 -15.06 -0.15 -6.75 16 23 H 0.07 2.11 7.83 -52.48 -0.41 1.70 16 24 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 25 N -0.92 -28.62 10.31 55.49 0.57 -28.05 16 26 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 30 C 0.13 2.91 6.63 -2.35 -0.02 2.89 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.16 1.57 7.51 -52.49 -0.39 1.18 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.72 4.44 -51.93 -0.23 0.49 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.14 5.67 -51.93 -0.29 0.85 16 44 H 0.08 1.12 6.49 -51.93 -0.34 0.78 16 45 H 0.08 1.69 5.48 -52.04 -0.29 1.40 16 46 H 0.05 0.90 5.39 -51.93 -0.28 0.62 16 47 H 0.03 0.95 7.51 -51.93 -0.39 0.56 16 48 H 0.04 1.26 7.37 -51.93 -0.38 0.87 16 49 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.02 0.32 6.09 -51.93 -0.32 0.00 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -34.54 377.87 -10.56 -45.10 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.79 Total: 0.49 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.86 Total: -2.13 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.63 Total: -58.53 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.05 Total: -8.68 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.54 -10.56 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208534.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.155 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds