Wall clock time and date at job start Wed Apr 1 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38174 * 119.55119 * 2 1 4 4 C 1.39795 * 119.00017 * 179.97438 * 3 2 1 5 5 C 1.48152 * 120.92449 * 179.97438 * 4 3 2 6 6 O 1.21524 * 119.99514 * 32.85269 * 5 4 3 7 7 N 1.34768 * 120.00628 * 212.85339 * 5 4 3 8 8 C 1.46929 * 120.62829 * 7.02194 * 7 5 4 9 9 C 1.53195 * 108.77646 * 233.63374 * 8 7 5 10 10 C 1.53038 * 109.31005 * 305.36192 * 9 8 7 11 11 C 1.53043 * 109.54114 * 61.36605 * 10 9 8 12 12 C 1.46920 * 120.63714 * 187.04390 * 7 5 4 13 13 H 1.09000 * 109.70585 * 246.22656 * 12 7 5 14 14 C 1.53000 * 109.58480 * 6.58275 * 12 7 5 15 15 H 1.09007 * 110.88719 * 300.42539 * 14 12 7 16 16 C 1.55157 * 111.00520 * 64.34531 * 14 12 7 17 17 C 1.54340 * 103.02213 * 153.38511 * 16 14 12 18 18 N 1.47023 * 107.26246 * 338.13950 * 17 16 14 19 19 C 1.36933 * 125.64805 * 178.85211 * 18 17 16 20 20 H 1.08001 * 120.00462 * 175.03886 * 19 18 17 21 21 C 1.38814 * 120.00015 * 355.03848 * 19 18 17 22 22 N 1.31614 * 120.00071 * 213.30333 * 21 19 18 23 23 Si 1.86806 * 119.99569 * 33.30102 * 21 19 18 24 24 H 1.48503 * 109.46787 * 174.11617 * 23 21 19 25 25 H 1.48498 * 109.47503 * 54.11880 * 23 21 19 26 26 H 1.48496 * 109.47113 * 294.11306 * 23 21 19 27 27 C 1.47424 * 108.70506 * 358.58724 * 18 17 16 28 28 C 1.39841 * 118.15562 * 0.25034 * 4 3 2 29 29 C 1.38124 * 118.99978 * 359.52252 * 28 4 3 30 30 N 1.31799 * 119.55720 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46507 * 90.00267 * 1 2 3 32 32 H 1.09002 * 109.47115 * 209.99847 * 1 2 3 33 33 H 1.08998 * 109.47546 * 330.00292 * 1 2 3 34 34 H 1.08001 * 120.50283 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.58935 * 113.84570 * 8 7 5 36 36 H 1.09003 * 109.70191 * 353.48770 * 8 7 5 37 37 H 1.09000 * 109.49629 * 185.41243 * 9 8 7 38 38 H 1.08998 * 109.49867 * 65.31326 * 9 8 7 39 39 H 1.08998 * 109.46356 * 301.34621 * 10 9 8 40 40 H 1.08995 * 109.46190 * 181.38752 * 10 9 8 41 41 H 1.08994 * 109.50236 * 178.68156 * 11 10 9 42 42 H 1.09007 * 109.52325 * 58.59863 * 11 10 9 43 43 H 1.09005 * 110.72046 * 271.94133 * 16 14 12 44 44 H 1.08997 * 110.72398 * 35.03829 * 16 14 12 45 45 H 1.08994 * 109.98885 * 218.66628 * 17 16 14 46 46 H 1.09002 * 109.77748 * 97.49596 * 17 16 14 47 47 H 0.96994 * 120.00241 * 5.00783 * 22 21 19 48 48 H 1.08996 * 110.36657 * 143.19589 * 27 18 17 49 49 H 1.09000 * 110.36918 * 265.51673 * 27 18 17 50 50 H 1.07997 * 120.49637 * 179.72651 * 28 4 3 51 51 H 1.08003 * 119.54952 * 180.22309 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5863 1.1886 0.0005 5 6 4.3599 2.4521 0.0000 6 8 3.9228 3.4323 0.5701 7 7 5.5482 2.5146 -0.6327 8 6 6.0191 1.3907 -1.4537 9 6 7.4177 0.9849 -0.9784 10 6 8.3356 2.2092 -1.0030 11 6 7.7921 3.2758 -0.0495 12 6 6.3976 3.7075 -0.5143 13 1 6.4723 4.2030 -1.4823 14 6 5.7910 4.6695 0.5091 15 1 4.7886 4.9751 0.2087 16 6 5.7795 4.0389 1.9266 17 6 5.8205 5.2708 2.8556 18 7 6.3725 6.3877 2.0750 19 6 6.5527 7.6668 2.5295 20 1 7.0408 8.3988 1.9031 21 6 6.1080 8.0226 3.7954 22 7 5.6640 9.2414 4.0185 23 14 6.1397 6.7716 5.1823 24 1 5.7520 7.4328 6.4543 25 1 7.5089 6.2117 5.3128 26 1 5.1833 5.6759 4.8825 27 6 6.7058 5.9011 0.7239 28 6 4.2343 -0.0507 -0.0043 29 6 3.4741 -1.2039 0.0006 30 7 2.1571 -1.1465 -0.0005 31 1 -0.3632 0.0000 -1.0278 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6493 2.1378 0.0004 35 1 6.0626 1.6951 -2.4994 36 1 5.3377 0.5467 -1.3468 37 1 7.8181 0.2167 -1.6399 38 1 7.3578 0.5955 0.0379 39 1 8.3755 2.6129 -2.0146 40 1 9.3379 1.9180 -0.6887 41 1 8.4588 4.1380 -0.0499 42 1 7.7287 2.8653 0.9583 43 1 4.8674 3.4635 2.0854 44 1 6.6595 3.4137 2.0778 45 1 6.4591 5.0680 3.7153 46 1 4.8120 5.5146 3.1896 47 1 5.5792 9.8687 3.2836 48 1 6.4900 6.6683 -0.0196 49 1 7.7545 5.6078 0.6742 50 1 5.3129 -0.1051 -0.0085 51 1 3.9654 -2.1657 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039249282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:16 Heat of formation + Delta-G solvation = 80.728576 kcal Electronic energy + Delta-G solvation = -31726.240040 eV Core-core repulsion = 27821.349965 eV Total energy + Delta-G solvation = -3904.890075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47236 -40.09497 -37.67426 -37.22799 -34.19119 -33.02380 -32.83667 -32.34845 -31.30117 -29.10843 -28.21716 -27.79699 -25.95426 -24.46477 -24.00287 -22.93696 -22.75508 -21.18214 -20.76756 -19.83824 -18.85793 -17.49010 -17.19257 -16.93465 -16.41767 -15.91561 -15.61553 -15.22907 -15.09217 -14.86734 -14.77126 -14.44659 -14.13894 -13.77229 -13.56581 -13.39361 -13.19828 -13.15861 -12.94122 -12.69006 -12.56504 -12.48667 -12.11171 -11.95065 -11.78984 -11.39874 -11.22539 -11.05593 -10.84119 -10.73722 -10.62126 -10.33951 -10.18262 -10.02128 -9.93627 -9.74764 -9.53644 -9.24121 -9.01319 -8.84924 -8.50544 -8.19485 -6.92387 -6.26118 -2.99239 0.50832 0.73963 2.64383 2.73657 3.45787 3.57665 3.63024 3.82138 3.93565 4.06661 4.40138 4.46712 4.59080 4.62123 4.69115 4.71796 4.77800 4.87680 4.99345 5.06948 5.10001 5.13649 5.22973 5.25238 5.28511 5.39182 5.43232 5.50977 5.51908 5.58094 5.62358 5.67486 5.71563 5.73844 5.79527 5.81429 5.88257 5.93852 5.99267 6.23513 6.29244 6.30473 6.44712 6.55196 6.63637 6.69229 6.86545 7.05913 7.17147 7.27884 7.60658 7.86729 8.08828 8.45764 9.15539 9.74961 10.43616 11.22444 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003671 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.357549 B = 7625.252142 C = 9112.201016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.126 3.874 3 C -0.120 4.120 4 C -0.073 4.073 5 C 0.544 3.456 6 O -0.488 6.488 7 N -0.597 5.597 8 C 0.079 3.921 9 C -0.136 4.136 10 C -0.119 4.119 11 C -0.140 4.140 12 C 0.162 3.838 13 H 0.074 0.926 14 C -0.098 4.098 15 H 0.111 0.889 16 C -0.128 4.128 17 C 0.125 3.875 18 N -0.608 5.608 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.908 5.908 23 Si 1.034 2.966 24 H -0.300 1.300 25 H -0.299 1.299 26 H -0.277 1.277 27 C 0.137 3.863 28 C -0.164 4.164 29 C 0.099 3.901 30 N -0.475 5.475 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.041 0.959 47 H 0.263 0.737 48 H 0.039 0.961 49 H 0.019 0.981 50 H 0.151 0.849 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 -24.787 -14.830 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 C -0.140 4.140 4 C -0.084 4.084 5 C 0.331 3.669 6 O -0.364 6.364 7 N -0.331 5.331 8 C -0.043 4.043 9 C -0.175 4.175 10 C -0.156 4.156 11 C -0.178 4.178 12 C 0.059 3.941 13 H 0.092 0.908 14 C -0.117 4.117 15 H 0.129 0.871 16 C -0.165 4.165 17 C 0.001 3.999 18 N -0.335 5.335 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.548 5.548 23 Si 0.866 3.134 24 H -0.228 1.228 25 H -0.228 1.228 26 H -0.204 1.204 27 C 0.010 3.990 28 C -0.184 4.184 29 C -0.057 4.057 30 N -0.185 5.185 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.036 0.964 50 H 0.169 0.831 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.048 -25.071 -12.877 28.349 hybrid contribution 1.263 0.884 -1.602 2.223 sum -1.786 -24.187 -14.479 28.246 Atomic orbital electron populations 1.20750 0.88276 1.03907 1.03307 1.21312 0.97333 0.87789 0.94691 1.22119 0.93188 1.00146 0.98591 1.20515 0.94512 0.94024 0.99351 1.18189 0.81444 0.87394 0.79831 1.90871 1.68316 1.34879 1.42289 1.47908 1.18416 1.17950 1.48798 1.22426 0.96671 0.90334 0.94888 1.21941 0.94932 0.98481 1.02103 1.21524 0.98692 0.95353 1.00072 1.22189 0.96032 0.99537 1.00029 1.21238 0.89204 0.84160 0.99461 0.90825 1.22863 1.00825 0.94331 0.93690 0.87108 1.23141 1.00986 0.97612 0.94804 1.21796 0.97060 0.87608 0.93483 1.44796 1.74026 1.06802 1.07865 1.19959 1.39256 0.84430 1.02579 0.90480 1.25542 0.96783 1.00161 0.98824 1.70919 1.40190 1.07766 1.35927 0.84426 0.76559 0.75651 0.76725 1.22797 1.22771 1.20379 1.21705 0.95149 0.93581 0.88542 1.22615 1.02114 0.92603 1.01080 1.22726 0.89231 0.98311 0.95464 1.67389 1.10273 1.29487 1.11398 0.90190 0.90232 0.90271 0.83664 0.91295 0.87808 0.90660 0.91377 0.91825 0.91600 0.89751 0.90608 0.89747 0.92823 0.96552 0.94111 0.92737 0.94266 0.96397 0.83138 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.17 36.00 0.37 -0.39 16 2 C 0.13 1.26 6.78 -82.63 -0.56 0.70 16 3 C -0.12 -1.30 9.34 -39.02 -0.36 -1.67 16 4 C -0.07 -0.82 5.47 -104.64 -0.57 -1.39 16 5 C 0.54 7.35 6.52 -12.19 -0.08 7.27 16 6 O -0.49 -8.49 10.34 5.34 0.06 -8.44 16 7 N -0.60 -6.88 2.95 -166.21 -0.49 -7.37 16 8 C 0.08 0.61 5.55 -3.71 -0.02 0.59 16 9 C -0.14 -0.93 5.74 -26.61 -0.15 -1.08 16 10 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 11 C -0.14 -1.65 4.70 -26.61 -0.13 -1.77 16 12 C 0.16 2.14 2.84 -67.60 -0.19 1.95 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.10 -1.76 2.14 -88.47 -0.19 -1.95 16 15 H 0.11 2.26 6.05 -51.94 -0.31 1.94 16 16 C -0.13 -2.48 5.21 -24.89 -0.13 -2.61 16 17 C 0.13 3.06 4.57 -3.05 -0.01 3.04 16 18 N -0.61 -16.05 3.38 -170.06 -0.57 -16.63 16 19 C -0.34 -10.16 10.40 -15.06 -0.16 -10.32 16 20 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 21 C -0.01 -0.36 5.43 -17.43 -0.09 -0.46 16 22 N -0.91 -29.58 13.70 55.49 0.76 -28.82 16 23 Si 1.03 27.84 25.06 -169.99 -4.26 23.57 16 24 H -0.30 -8.17 7.11 56.52 0.40 -7.76 16 25 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 26 H -0.28 -7.00 5.06 56.52 0.29 -6.71 16 27 C 0.14 2.90 6.60 -2.53 -0.02 2.89 16 28 C -0.16 -1.41 7.53 -39.02 -0.29 -1.71 16 29 C 0.10 0.83 11.17 -17.60 -0.20 0.63 16 30 N -0.47 -4.88 10.25 -9.52 -0.10 -4.98 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.15 1.55 8.03 -52.49 -0.42 1.13 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.70 3.55 -51.93 -0.18 0.51 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.07 6.39 -51.93 -0.33 0.73 16 42 H 0.08 0.99 5.77 -51.93 -0.30 0.69 16 43 H 0.08 1.66 5.33 -52.07 -0.28 1.38 16 44 H 0.05 0.95 5.57 -51.93 -0.29 0.66 16 45 H 0.02 0.42 4.94 -51.93 -0.26 0.17 16 46 H 0.04 1.09 6.58 -51.93 -0.34 0.75 16 47 H 0.26 8.44 8.73 -40.82 -0.36 8.08 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.02 0.37 5.87 -51.93 -0.30 0.06 16 50 H 0.15 1.01 5.06 -52.49 -0.27 0.74 16 51 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -36.12 369.81 -9.58 -45.70 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.60 Total: -1.21 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -2.95 Total: -7.41 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.40 Total: -57.79 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.06 Total: -8.44 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.26 Total: 23.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.12 -9.58 -45.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039249282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.427 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds