Wall clock time and date at job start Wed Apr 1 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38174 * 119.55119 * 2 1 4 4 C 1.39795 * 119.00017 * 179.97438 * 3 2 1 5 5 C 1.48152 * 120.92449 * 179.97438 * 4 3 2 6 6 O 1.21524 * 119.99514 * 32.85269 * 5 4 3 7 7 N 1.34768 * 120.00628 * 212.85339 * 5 4 3 8 8 C 1.46929 * 120.62829 * 7.02194 * 7 5 4 9 9 C 1.53195 * 108.77646 * 233.63374 * 8 7 5 10 10 C 1.53038 * 109.31005 * 305.36192 * 9 8 7 11 11 C 1.53043 * 109.54114 * 61.36605 * 10 9 8 12 12 C 1.46920 * 120.63714 * 187.04390 * 7 5 4 13 13 H 1.09000 * 109.70585 * 246.22656 * 12 7 5 14 14 C 1.53000 * 109.58480 * 6.58275 * 12 7 5 15 15 H 1.09007 * 110.88719 * 300.42539 * 14 12 7 16 16 C 1.55157 * 111.00520 * 64.34531 * 14 12 7 17 17 C 1.54340 * 103.02213 * 153.38511 * 16 14 12 18 18 N 1.47023 * 107.26246 * 338.13950 * 17 16 14 19 19 C 1.36933 * 125.64805 * 178.85211 * 18 17 16 20 20 H 1.08001 * 120.00462 * 175.03886 * 19 18 17 21 21 C 1.38814 * 120.00015 * 355.03848 * 19 18 17 22 22 N 1.31614 * 120.00071 * 213.30333 * 21 19 18 23 23 Si 1.86806 * 119.99569 * 33.30102 * 21 19 18 24 24 H 1.48503 * 109.46787 * 174.11617 * 23 21 19 25 25 H 1.48498 * 109.47503 * 54.11880 * 23 21 19 26 26 H 1.48496 * 109.47113 * 294.11306 * 23 21 19 27 27 C 1.47424 * 108.70506 * 358.58724 * 18 17 16 28 28 C 1.39841 * 118.15562 * 0.25034 * 4 3 2 29 29 C 1.38124 * 118.99978 * 359.52252 * 28 4 3 30 30 N 1.31799 * 119.55720 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46507 * 90.00267 * 1 2 3 32 32 H 1.09002 * 109.47115 * 209.99847 * 1 2 3 33 33 H 1.08998 * 109.47546 * 330.00292 * 1 2 3 34 34 H 1.08001 * 120.50283 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.58935 * 113.84570 * 8 7 5 36 36 H 1.09003 * 109.70191 * 353.48770 * 8 7 5 37 37 H 1.09000 * 109.49629 * 185.41243 * 9 8 7 38 38 H 1.08998 * 109.49867 * 65.31326 * 9 8 7 39 39 H 1.08998 * 109.46356 * 301.34621 * 10 9 8 40 40 H 1.08995 * 109.46190 * 181.38752 * 10 9 8 41 41 H 1.08994 * 109.50236 * 178.68156 * 11 10 9 42 42 H 1.09007 * 109.52325 * 58.59863 * 11 10 9 43 43 H 1.09005 * 110.72046 * 271.94133 * 16 14 12 44 44 H 1.08997 * 110.72398 * 35.03829 * 16 14 12 45 45 H 1.08994 * 109.98885 * 218.66628 * 17 16 14 46 46 H 1.09002 * 109.77748 * 97.49596 * 17 16 14 47 47 H 0.96994 * 120.00241 * 5.00783 * 22 21 19 48 48 H 1.08996 * 110.36657 * 143.19589 * 27 18 17 49 49 H 1.09000 * 110.36918 * 265.51673 * 27 18 17 50 50 H 1.07997 * 120.49637 * 179.72651 * 28 4 3 51 51 H 1.08003 * 119.54952 * 180.22309 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5863 1.1886 0.0005 5 6 4.3599 2.4521 0.0000 6 8 3.9228 3.4323 0.5701 7 7 5.5482 2.5146 -0.6327 8 6 6.0191 1.3907 -1.4537 9 6 7.4177 0.9849 -0.9784 10 6 8.3356 2.2092 -1.0030 11 6 7.7921 3.2758 -0.0495 12 6 6.3976 3.7075 -0.5143 13 1 6.4723 4.2030 -1.4823 14 6 5.7910 4.6695 0.5091 15 1 4.7886 4.9751 0.2087 16 6 5.7795 4.0389 1.9266 17 6 5.8205 5.2708 2.8556 18 7 6.3725 6.3877 2.0750 19 6 6.5527 7.6668 2.5295 20 1 7.0408 8.3988 1.9031 21 6 6.1080 8.0226 3.7954 22 7 5.6640 9.2414 4.0185 23 14 6.1397 6.7716 5.1823 24 1 5.7520 7.4328 6.4543 25 1 7.5089 6.2117 5.3128 26 1 5.1833 5.6759 4.8825 27 6 6.7058 5.9011 0.7239 28 6 4.2343 -0.0507 -0.0043 29 6 3.4741 -1.2039 0.0006 30 7 2.1571 -1.1465 -0.0005 31 1 -0.3632 0.0000 -1.0278 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6493 2.1378 0.0004 35 1 6.0626 1.6951 -2.4994 36 1 5.3377 0.5467 -1.3468 37 1 7.8181 0.2167 -1.6399 38 1 7.3578 0.5955 0.0379 39 1 8.3755 2.6129 -2.0146 40 1 9.3379 1.9180 -0.6887 41 1 8.4588 4.1380 -0.0499 42 1 7.7287 2.8653 0.9583 43 1 4.8674 3.4635 2.0854 44 1 6.6595 3.4137 2.0778 45 1 6.4591 5.0680 3.7153 46 1 4.8120 5.5146 3.1896 47 1 5.5792 9.8687 3.2836 48 1 6.4900 6.6683 -0.0196 49 1 7.7545 5.6078 0.6742 50 1 5.3129 -0.1051 -0.0085 51 1 3.9654 -2.1657 0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039249282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:14 Heat of formation + Delta-G solvation = 56.608256 kcal Electronic energy + Delta-G solvation = -31727.285976 eV Core-core repulsion = 27821.349965 eV Total energy + Delta-G solvation = -3905.936010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.42042 -40.96634 -39.04565 -38.40827 -35.44538 -34.44632 -33.58760 -33.42426 -32.67749 -30.83813 -29.54467 -28.58613 -27.08945 -25.69080 -25.18912 -24.07276 -23.66745 -22.61102 -21.89394 -21.27216 -19.96579 -19.45690 -18.16975 -17.81512 -17.21866 -17.10101 -16.91457 -16.80887 -16.08983 -15.89363 -15.50565 -15.47446 -15.22681 -15.11020 -14.94306 -14.68000 -14.65272 -14.25653 -13.99343 -13.92102 -13.40985 -13.30559 -13.20530 -13.09902 -12.98894 -12.84078 -12.63475 -12.33262 -12.12759 -11.93942 -11.87981 -11.69486 -11.62096 -11.45419 -11.32190 -10.97452 -10.81793 -10.73278 -10.53367 -10.09076 -9.86857 -9.52964 -9.13247 -8.72059 -5.37790 -0.27714 0.04989 1.39935 1.44410 1.66386 1.70051 1.81902 2.53095 2.72860 2.89870 3.22180 3.34228 3.40736 3.67997 3.75418 3.79614 3.85508 3.93634 3.98526 4.01340 4.10651 4.10922 4.18211 4.34339 4.38721 4.41592 4.48803 4.54115 4.63317 4.64051 4.72967 4.75067 4.76580 4.80851 4.86641 4.93159 4.95501 5.02094 5.05894 5.13230 5.14839 5.16132 5.23978 5.25667 5.30553 5.46069 5.51038 5.57597 5.63005 5.69509 6.07215 6.34612 6.79611 6.92144 7.08546 7.48813 8.15348 8.77595 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012054 B = 0.003671 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.357549 B = 7625.252142 C = 9112.201016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.120 3.880 3 C -0.137 4.137 4 C -0.087 4.087 5 C 0.541 3.459 6 O -0.541 6.541 7 N -0.591 5.591 8 C 0.074 3.926 9 C -0.131 4.131 10 C -0.114 4.114 11 C -0.137 4.137 12 C 0.168 3.832 13 H 0.084 0.916 14 C -0.080 4.080 15 H 0.083 0.917 16 C -0.112 4.112 17 C 0.120 3.880 18 N -0.629 5.629 19 C -0.332 4.332 20 H 0.051 0.949 21 C -0.067 4.067 22 N -0.941 5.941 23 Si 1.078 2.922 24 H -0.304 1.304 25 H -0.283 1.283 26 H -0.256 1.256 27 C 0.131 3.869 28 C -0.153 4.153 29 C 0.104 3.896 30 N -0.491 5.491 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.017 0.983 46 H 0.011 0.989 47 H 0.251 0.749 48 H 0.027 0.973 49 H 0.041 0.959 50 H 0.176 0.824 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -29.619 -16.255 33.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.017 4.017 3 C -0.158 4.158 4 C -0.098 4.098 5 C 0.330 3.670 6 O -0.420 6.420 7 N -0.323 5.323 8 C -0.046 4.046 9 C -0.169 4.169 10 C -0.152 4.152 11 C -0.175 4.175 12 C 0.065 3.935 13 H 0.102 0.898 14 C -0.100 4.100 15 H 0.101 0.899 16 C -0.149 4.149 17 C -0.005 4.005 18 N -0.357 5.357 19 C -0.460 4.460 20 H 0.069 0.931 21 C -0.263 4.263 22 N -0.583 5.583 23 Si 0.905 3.095 24 H -0.232 1.232 25 H -0.210 1.210 26 H -0.181 1.181 27 C 0.006 3.994 28 C -0.173 4.173 29 C -0.053 4.053 30 N -0.202 5.202 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.029 0.971 47 H 0.060 0.940 48 H 0.045 0.955 49 H 0.059 0.941 50 H 0.193 0.807 51 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.606 -29.962 -14.369 33.269 hybrid contribution 0.835 2.404 -1.302 2.858 sum -0.771 -27.558 -15.671 31.712 Atomic orbital electron populations 1.20809 0.86877 1.04264 1.04209 1.21599 0.98429 0.87389 0.94289 1.22146 0.93515 1.00290 0.99849 1.20415 0.94460 0.93954 1.01016 1.18611 0.81728 0.87626 0.79082 1.90850 1.69617 1.36728 1.44771 1.47990 1.17515 1.18342 1.48489 1.22748 0.97702 0.89290 0.94903 1.21956 0.93514 0.98403 1.03019 1.21510 0.99439 0.94792 0.99433 1.22136 0.94517 1.00372 1.00429 1.21063 0.90039 0.84194 0.98237 0.89802 1.22606 0.98845 0.93945 0.94586 0.89851 1.23054 1.02170 0.95557 0.94091 1.21851 0.95017 0.88978 0.94633 1.44910 1.74253 1.06270 1.10219 1.19910 1.37887 0.85981 1.02193 0.93078 1.26755 0.96920 1.01227 1.01363 1.71016 1.43101 1.08716 1.35506 0.83856 0.77790 0.74260 0.73620 1.23226 1.21033 1.18125 1.21946 0.97038 0.94694 0.85739 1.22827 1.03264 0.91375 0.99816 1.23355 0.88647 0.99688 0.93611 1.67479 1.11447 1.29395 1.11875 0.88964 0.89868 0.89882 0.84740 0.89963 0.86386 0.87414 0.91245 0.90896 0.90421 0.90881 0.91713 0.89627 0.90512 0.96534 0.97095 0.94037 0.95471 0.94147 0.80679 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.17 71.23 0.72 -0.68 16 2 C 0.12 2.24 6.78 42.55 0.29 2.53 16 3 C -0.14 -2.94 9.34 22.63 0.21 -2.73 16 4 C -0.09 -1.82 5.47 -19.88 -0.11 -1.93 16 5 C 0.54 14.07 6.52 86.88 0.57 14.64 16 6 O -0.54 -19.20 10.34 -3.79 -0.04 -19.24 16 7 N -0.59 -12.18 2.95 -798.06 -2.35 -14.53 16 8 C 0.07 0.83 5.55 86.36 0.48 1.30 16 9 C -0.13 -1.07 5.74 30.67 0.18 -0.89 16 10 C -0.11 -1.39 5.88 30.62 0.18 -1.21 16 11 C -0.14 -2.81 4.70 30.67 0.14 -2.67 16 12 C 0.17 4.13 2.84 44.98 0.13 4.26 16 13 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 14 C -0.08 -2.89 2.14 -9.40 -0.02 -2.91 16 15 H 0.08 3.52 6.05 -2.66 -0.02 3.51 16 16 C -0.11 -4.25 5.21 31.79 0.17 -4.08 16 17 C 0.12 5.88 4.57 86.73 0.40 6.28 16 18 N -0.63 -33.98 3.38 -691.96 -2.34 -36.32 16 19 C -0.33 -20.83 10.40 84.03 0.87 -19.95 16 20 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 21 C -0.07 -4.28 5.43 84.86 0.46 -3.82 16 22 N -0.94 -63.73 13.70 21.65 0.30 -63.44 16 23 Si 1.08 57.44 25.06 68.60 1.72 59.16 16 24 H -0.30 -16.30 7.11 99.48 0.71 -15.59 16 25 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.26 -12.70 5.06 99.48 0.50 -12.20 16 27 C 0.13 5.63 6.60 86.86 0.57 6.20 16 28 C -0.15 -2.09 7.53 22.63 0.17 -1.92 16 29 C 0.10 1.33 11.17 84.67 0.95 2.28 16 30 N -0.49 -8.86 10.25 -184.05 -1.89 -10.75 16 31 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 34 H 0.13 3.05 8.03 -2.91 -0.02 3.03 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.12 1.02 3.55 -2.39 -0.01 1.01 16 37 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.07 0.61 7.64 -2.39 -0.02 0.59 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.67 6.39 -2.39 -0.02 1.65 16 42 H 0.06 1.49 5.77 -2.38 -0.01 1.47 16 43 H 0.09 3.35 5.33 -4.64 -0.02 3.32 16 44 H 0.08 2.56 5.57 -2.39 -0.01 2.54 16 45 H 0.02 0.84 4.94 -2.39 -0.01 0.82 16 46 H 0.01 0.61 6.58 -2.39 -0.02 0.59 16 47 H 0.25 16.97 8.73 -92.71 -0.81 16.16 16 48 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.04 1.59 5.87 -2.39 -0.01 1.58 16 50 H 0.18 1.45 5.06 -2.91 -0.01 1.44 16 51 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -83.40 369.81 2.45 -80.94 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.70 Total: 9.48 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 6.35 Total: -5.32 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -6.28 Total: -125.03 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.04 Total: -19.24 kcal Atomic # 14 Polarization: 57.44 SS G_CDS: 1.72 Total: 59.16 kcal Total: -83.40 2.45 -80.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039249282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.551 kcal (2) G-P(sol) polarization free energy of solvation -83.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds