Wall clock time and date at job start Wed Apr 1 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38174 * 119.55271 * 2 1 4 4 C 1.39796 * 118.99858 * 180.23108 * 3 2 1 5 5 C 1.48147 * 120.92099 * 179.75134 * 4 3 2 6 6 O 1.21520 * 120.00080 * 26.43273 * 5 4 3 7 7 N 1.34771 * 120.00310 * 206.43251 * 5 4 3 8 8 C 1.46970 * 120.65400 * 5.08122 * 7 5 4 9 9 C 1.53183 * 108.89159 * 233.53946 * 8 7 5 10 10 C 1.53042 * 109.31345 * 305.44164 * 9 8 7 11 11 C 1.53043 * 109.53715 * 61.36308 * 10 9 8 12 12 C 1.46928 * 120.63486 * 185.26793 * 7 5 4 13 13 H 1.09003 * 109.58646 * 246.31854 * 12 7 5 14 14 C 1.52999 * 109.58696 * 6.60287 * 12 7 5 15 15 H 1.09004 * 110.63976 * 38.11420 * 14 12 7 16 16 C 1.55162 * 110.86989 * 274.86997 * 14 12 7 17 17 C 1.55128 * 101.48310 * 205.89699 * 16 14 12 18 18 N 1.47422 * 104.72463 * 37.29792 * 17 16 14 19 19 C 1.36928 * 125.65171 * 155.81799 * 18 17 16 20 20 H 1.08008 * 120.00378 * 190.51034 * 19 18 17 21 21 C 1.38811 * 119.99954 * 10.50956 * 19 18 17 22 22 N 1.31615 * 120.00256 * 8.96603 * 21 19 18 23 23 Si 1.86806 * 120.00121 * 188.96296 * 21 19 18 24 24 H 1.48498 * 109.47380 * 265.00691 * 23 21 19 25 25 H 1.48505 * 109.46667 * 25.00852 * 23 21 19 26 26 H 1.48504 * 109.47016 * 145.00348 * 23 21 19 27 27 C 1.47030 * 108.70036 * 335.54835 * 18 17 16 28 28 C 1.39831 * 118.15750 * 359.47561 * 4 3 2 29 29 C 1.38132 * 119.00220 * 0.27589 * 28 4 3 30 30 N 1.31797 * 119.55186 * 179.69913 * 2 1 3 31 31 H 1.08996 * 109.46929 * 270.30499 * 1 2 3 32 32 H 1.08998 * 109.46881 * 30.30390 * 1 2 3 33 33 H 1.08996 * 109.47222 * 150.30124 * 1 2 3 34 34 H 1.07999 * 120.50017 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.46331 * 113.75102 * 8 7 5 36 36 H 1.09000 * 109.70656 * 353.46809 * 8 7 5 37 37 H 1.08994 * 109.50008 * 185.48732 * 9 8 7 38 38 H 1.09006 * 109.50076 * 65.38983 * 9 8 7 39 39 H 1.09008 * 109.45776 * 301.34715 * 10 9 8 40 40 H 1.08998 * 109.45270 * 181.37945 * 10 9 8 41 41 H 1.09009 * 109.49419 * 178.68840 * 11 10 9 42 42 H 1.09000 * 109.52419 * 58.60942 * 11 10 9 43 43 H 1.08998 * 111.00132 * 324.13590 * 16 14 12 44 44 H 1.08997 * 111.00543 * 87.94681 * 16 14 12 45 45 H 1.08997 * 110.50083 * 278.45029 * 17 16 14 46 46 H 1.09007 * 110.34088 * 156.06005 * 17 16 14 47 47 H 0.96993 * 120.00571 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.87786 * 120.70945 * 27 18 17 49 49 H 1.08990 * 109.88301 * 241.87223 * 27 18 17 50 50 H 1.07997 * 120.50019 * 180.29658 * 28 4 3 51 51 H 1.07994 * 119.55269 * 179.97438 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0049 5 6 4.3599 2.4520 -0.0106 6 8 3.8751 3.4633 0.4572 7 7 5.6013 2.4798 -0.5347 8 6 6.1591 1.2959 -1.2033 9 6 7.5129 0.9604 -0.5700 10 6 8.4157 2.1951 -0.6215 11 6 7.7757 3.3310 0.1799 12 6 6.4248 3.6933 -0.4449 13 1 6.5818 4.1030 -1.4427 14 6 5.7168 4.7301 0.4296 15 1 5.2172 4.2474 1.2696 16 6 4.7072 5.5610 -0.4057 17 6 4.6450 6.8802 0.4080 18 7 6.0251 7.0950 0.8796 19 6 6.5726 8.3024 1.2222 20 1 7.6359 8.3842 1.3932 21 6 5.7611 9.4214 1.3496 22 7 4.4518 9.2920 1.3163 23 14 6.5274 11.1109 1.5685 24 1 6.6010 11.4375 3.0152 25 1 7.8953 11.1126 0.9903 26 1 5.6951 12.1257 0.8736 27 6 6.7143 5.7971 0.9274 28 6 4.2344 -0.0507 0.0016 29 6 3.4741 -1.2039 0.0068 30 7 2.1571 -1.1465 0.0060 31 1 -0.3633 0.0055 1.0276 32 1 -0.3633 0.8872 -0.5185 33 1 -0.3633 -0.8926 -0.5091 34 1 1.6494 2.1378 -0.0004 35 1 6.2943 1.5077 -2.2639 36 1 5.4802 0.4517 -1.0829 37 1 7.9804 0.1447 -1.1214 38 1 7.3651 0.6610 0.4677 39 1 8.5431 2.5088 -1.6577 40 1 9.3882 1.9518 -0.1936 41 1 8.4302 4.2025 0.1622 42 1 7.6254 3.0098 1.2107 43 1 5.0848 5.7367 -1.4130 44 1 3.7318 5.0753 -0.4357 45 1 3.9668 6.7748 1.2548 46 1 4.3297 7.7051 -0.2311 47 1 3.8847 10.0739 1.4050 48 1 7.5895 5.8181 0.2780 49 1 7.0150 5.5746 1.9511 50 1 5.3129 -0.1052 0.0029 51 1 3.9653 -2.1657 0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039249284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:20 Heat of formation + Delta-G solvation = 78.019210 kcal Electronic energy + Delta-G solvation = -31341.129243 eV Core-core repulsion = 27436.121682 eV Total energy + Delta-G solvation = -3905.007562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.36743 -39.94180 -37.51786 -36.98405 -34.19530 -32.94474 -32.75304 -32.21524 -31.02277 -29.05557 -28.07795 -27.16966 -25.81438 -24.49124 -24.22107 -22.86102 -22.63544 -21.12853 -19.85029 -19.70604 -19.23420 -17.27933 -17.02538 -16.64287 -16.43717 -16.07552 -15.42872 -14.95150 -14.73943 -14.57196 -14.55073 -14.21977 -13.99367 -13.79800 -13.51431 -13.39362 -13.13689 -12.94982 -12.65337 -12.52403 -12.37198 -12.13281 -11.90172 -11.77019 -11.49704 -11.24853 -11.07218 -10.91306 -10.82943 -10.76774 -10.66537 -10.21163 -10.07319 -9.91899 -9.84125 -9.59159 -9.56618 -9.38733 -9.16526 -8.82615 -8.44592 -8.41208 -6.62949 -5.61364 -2.93745 0.54497 0.78649 2.75405 2.84567 3.45509 3.50481 3.53003 3.53730 3.97412 4.14003 4.43666 4.54263 4.59600 4.62056 4.68664 4.74622 4.78556 4.95559 5.10674 5.12422 5.18708 5.24794 5.33993 5.36859 5.45249 5.53331 5.57399 5.60248 5.62771 5.69240 5.72164 5.75959 5.81032 5.85520 5.95346 6.02880 6.08850 6.11640 6.28648 6.33903 6.42407 6.55053 6.58538 6.83964 6.96381 7.08590 7.29469 7.37892 7.64893 7.68999 7.82923 7.95870 8.22965 8.41533 9.33325 9.95870 10.66470 11.51191 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.003094 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.321093 B = 9047.737036 C =10773.421399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.126 3.874 3 C -0.119 4.119 4 C -0.072 4.072 5 C 0.541 3.459 6 O -0.487 6.487 7 N -0.596 5.596 8 C 0.058 3.942 9 C -0.136 4.136 10 C -0.120 4.120 11 C -0.134 4.134 12 C 0.161 3.839 13 H 0.071 0.929 14 C -0.096 4.096 15 H 0.103 0.897 16 C -0.129 4.129 17 C 0.177 3.823 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.917 5.917 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.138 3.862 28 C -0.179 4.179 29 C 0.099 3.901 30 N -0.476 5.476 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.024 0.976 46 H 0.061 0.939 47 H 0.251 0.749 48 H 0.019 0.981 49 H 0.015 0.985 50 H 0.165 0.835 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -24.922 -6.548 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 C -0.139 4.139 4 C -0.083 4.083 5 C 0.328 3.672 6 O -0.362 6.362 7 N -0.330 5.330 8 C -0.063 4.063 9 C -0.174 4.174 10 C -0.157 4.157 11 C -0.172 4.172 12 C 0.059 3.941 13 H 0.089 0.911 14 C -0.114 4.114 15 H 0.120 0.880 16 C -0.167 4.167 17 C 0.052 3.948 18 N -0.330 5.330 19 C -0.355 4.355 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.217 1.217 27 C 0.011 3.989 28 C -0.198 4.198 29 C -0.058 4.058 30 N -0.187 5.187 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.033 0.967 50 H 0.182 0.818 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.491 -24.892 -6.265 25.673 hybrid contribution 1.124 1.667 0.141 2.016 sum 0.633 -23.225 -6.124 24.027 Atomic orbital electron populations 1.20748 0.88291 1.03725 1.03459 1.21320 0.97326 0.87806 0.94670 1.22144 0.93263 1.00186 0.98331 1.20581 0.94579 0.94060 0.99059 1.18240 0.81447 0.87478 0.79990 1.90910 1.68707 1.32156 1.44430 1.47918 1.14215 1.14173 1.56667 1.22898 0.96598 0.89860 0.96987 1.21928 0.95366 0.98580 1.01557 1.21535 0.98401 0.94969 1.00824 1.22095 0.96246 0.99074 0.99783 1.21411 0.89494 0.83521 0.99690 0.91079 1.22656 0.95866 0.93685 0.99229 0.87966 1.23259 0.98819 0.97748 0.96923 1.21384 0.86042 0.92270 0.95082 1.44536 1.10152 1.01170 1.77114 1.19018 0.91827 0.84553 1.40112 0.90905 1.24826 0.95415 0.98154 1.02182 1.69988 1.01981 1.28128 1.56290 0.86165 0.78066 0.84369 0.77549 1.21744 1.20699 1.21708 1.21460 0.93960 0.86725 0.96713 1.22937 1.02514 0.92774 1.01613 1.22741 0.89267 0.98303 0.95467 1.67385 1.10305 1.29512 1.11497 0.90083 0.90313 0.90325 0.83487 0.91399 0.86209 0.90693 0.91408 0.91782 0.91641 0.89645 0.91412 0.93984 0.90321 0.95787 0.92062 0.93884 0.96325 0.96677 0.81811 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.16 36.01 0.37 -0.43 16 2 C 0.13 1.31 6.78 -82.63 -0.56 0.75 16 3 C -0.12 -1.36 9.32 -39.02 -0.36 -1.72 16 4 C -0.07 -0.84 5.64 -104.65 -0.59 -1.43 16 5 C 0.54 7.72 7.29 -12.19 -0.09 7.63 16 6 O -0.49 -8.80 9.88 5.35 0.05 -8.75 16 7 N -0.60 -7.43 2.98 -166.19 -0.50 -7.93 16 8 C 0.06 0.49 5.60 -3.69 -0.02 0.47 16 9 C -0.14 -0.99 5.70 -26.62 -0.15 -1.14 16 10 C -0.12 -1.07 5.88 -26.69 -0.16 -1.23 16 11 C -0.13 -1.64 4.65 -26.61 -0.12 -1.77 16 12 C 0.16 2.34 2.67 -67.60 -0.18 2.16 16 13 H 0.07 1.07 7.72 -51.93 -0.40 0.67 16 14 C -0.10 -1.83 1.94 -88.79 -0.17 -2.00 16 15 H 0.10 2.14 5.68 -52.61 -0.30 1.84 16 16 C -0.13 -2.77 5.87 -24.46 -0.14 -2.91 16 17 C 0.18 4.71 5.43 -2.41 -0.01 4.70 16 18 N -0.60 -16.56 3.39 -169.94 -0.58 -17.13 16 19 C -0.23 -6.66 10.24 -15.06 -0.15 -6.81 16 20 H 0.07 2.06 7.85 -52.48 -0.41 1.65 16 21 C -0.01 -0.28 5.40 -17.43 -0.09 -0.37 16 22 N -0.92 -28.37 10.68 55.49 0.59 -27.78 16 23 Si 0.91 22.90 29.56 -169.99 -5.03 17.88 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 C 0.14 3.06 5.85 -3.06 -0.02 3.04 16 28 C -0.18 -1.57 7.74 -39.02 -0.30 -1.87 16 29 C 0.10 0.84 11.17 -17.59 -0.20 0.64 16 30 N -0.48 -5.02 10.25 -9.52 -0.10 -5.11 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.15 1.68 7.95 -52.49 -0.42 1.26 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 0.85 2.91 -66.12 -0.19 0.65 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.50 7.92 -51.93 -0.41 0.09 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 1.12 6.36 -51.92 -0.33 0.79 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.87 7.77 -51.93 -0.40 0.47 16 44 H 0.08 1.67 5.76 -51.93 -0.30 1.37 16 45 H 0.02 0.71 8.07 -51.93 -0.42 0.29 16 46 H 0.06 1.79 6.95 -51.93 -0.36 1.43 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 48 H 0.02 0.40 6.33 -51.93 -0.33 0.07 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.17 1.08 4.55 -52.49 -0.24 0.85 16 51 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -35.01 380.79 -10.65 -45.66 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.87 Total: -0.28 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.96 Total: -2.28 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.58 Total: -57.96 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.05 Total: -8.75 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.03 Total: 17.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.01 -10.65 -45.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039249284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.679 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds