Wall clock time and date at job start Wed Apr 1 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38174 * 119.55271 * 2 1 4 4 C 1.39796 * 118.99858 * 180.23108 * 3 2 1 5 5 C 1.48147 * 120.92099 * 179.75134 * 4 3 2 6 6 O 1.21520 * 120.00080 * 26.43273 * 5 4 3 7 7 N 1.34771 * 120.00310 * 206.43251 * 5 4 3 8 8 C 1.46970 * 120.65400 * 5.08122 * 7 5 4 9 9 C 1.53183 * 108.89159 * 233.53946 * 8 7 5 10 10 C 1.53042 * 109.31345 * 305.44164 * 9 8 7 11 11 C 1.53043 * 109.53715 * 61.36308 * 10 9 8 12 12 C 1.46928 * 120.63486 * 185.26793 * 7 5 4 13 13 H 1.09003 * 109.58646 * 246.31854 * 12 7 5 14 14 C 1.52999 * 109.58696 * 6.60287 * 12 7 5 15 15 H 1.09004 * 110.63976 * 38.11420 * 14 12 7 16 16 C 1.55162 * 110.86989 * 274.86997 * 14 12 7 17 17 C 1.55128 * 101.48310 * 205.89699 * 16 14 12 18 18 N 1.47422 * 104.72463 * 37.29792 * 17 16 14 19 19 C 1.36928 * 125.65171 * 155.81799 * 18 17 16 20 20 H 1.08008 * 120.00378 * 190.51034 * 19 18 17 21 21 C 1.38811 * 119.99954 * 10.50956 * 19 18 17 22 22 N 1.31615 * 120.00256 * 8.96603 * 21 19 18 23 23 Si 1.86806 * 120.00121 * 188.96296 * 21 19 18 24 24 H 1.48498 * 109.47380 * 265.00691 * 23 21 19 25 25 H 1.48505 * 109.46667 * 25.00852 * 23 21 19 26 26 H 1.48504 * 109.47016 * 145.00348 * 23 21 19 27 27 C 1.47030 * 108.70036 * 335.54835 * 18 17 16 28 28 C 1.39831 * 118.15750 * 359.47561 * 4 3 2 29 29 C 1.38132 * 119.00220 * 0.27589 * 28 4 3 30 30 N 1.31797 * 119.55186 * 179.69913 * 2 1 3 31 31 H 1.08996 * 109.46929 * 270.30499 * 1 2 3 32 32 H 1.08998 * 109.46881 * 30.30390 * 1 2 3 33 33 H 1.08996 * 109.47222 * 150.30124 * 1 2 3 34 34 H 1.07999 * 120.50017 * 359.97438 * 3 2 1 35 35 H 1.08997 * 109.46331 * 113.75102 * 8 7 5 36 36 H 1.09000 * 109.70656 * 353.46809 * 8 7 5 37 37 H 1.08994 * 109.50008 * 185.48732 * 9 8 7 38 38 H 1.09006 * 109.50076 * 65.38983 * 9 8 7 39 39 H 1.09008 * 109.45776 * 301.34715 * 10 9 8 40 40 H 1.08998 * 109.45270 * 181.37945 * 10 9 8 41 41 H 1.09009 * 109.49419 * 178.68840 * 11 10 9 42 42 H 1.09000 * 109.52419 * 58.60942 * 11 10 9 43 43 H 1.08998 * 111.00132 * 324.13590 * 16 14 12 44 44 H 1.08997 * 111.00543 * 87.94681 * 16 14 12 45 45 H 1.08997 * 110.50083 * 278.45029 * 17 16 14 46 46 H 1.09007 * 110.34088 * 156.06005 * 17 16 14 47 47 H 0.96993 * 120.00571 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.87786 * 120.70945 * 27 18 17 49 49 H 1.08990 * 109.88301 * 241.87223 * 27 18 17 50 50 H 1.07997 * 120.50019 * 180.29658 * 28 4 3 51 51 H 1.07994 * 119.55269 * 179.97438 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0049 5 6 4.3599 2.4520 -0.0106 6 8 3.8751 3.4633 0.4572 7 7 5.6013 2.4798 -0.5347 8 6 6.1591 1.2959 -1.2033 9 6 7.5129 0.9604 -0.5700 10 6 8.4157 2.1951 -0.6215 11 6 7.7757 3.3310 0.1799 12 6 6.4248 3.6933 -0.4449 13 1 6.5818 4.1030 -1.4427 14 6 5.7168 4.7301 0.4296 15 1 5.2172 4.2474 1.2696 16 6 4.7072 5.5610 -0.4057 17 6 4.6450 6.8802 0.4080 18 7 6.0251 7.0950 0.8796 19 6 6.5726 8.3024 1.2222 20 1 7.6359 8.3842 1.3932 21 6 5.7611 9.4214 1.3496 22 7 4.4518 9.2920 1.3163 23 14 6.5274 11.1109 1.5685 24 1 6.6010 11.4375 3.0152 25 1 7.8953 11.1126 0.9903 26 1 5.6951 12.1257 0.8736 27 6 6.7143 5.7971 0.9274 28 6 4.2344 -0.0507 0.0016 29 6 3.4741 -1.2039 0.0068 30 7 2.1571 -1.1465 0.0060 31 1 -0.3633 0.0055 1.0276 32 1 -0.3633 0.8872 -0.5185 33 1 -0.3633 -0.8926 -0.5091 34 1 1.6494 2.1378 -0.0004 35 1 6.2943 1.5077 -2.2639 36 1 5.4802 0.4517 -1.0829 37 1 7.9804 0.1447 -1.1214 38 1 7.3651 0.6610 0.4677 39 1 8.5431 2.5088 -1.6577 40 1 9.3882 1.9518 -0.1936 41 1 8.4302 4.2025 0.1622 42 1 7.6254 3.0098 1.2107 43 1 5.0848 5.7367 -1.4130 44 1 3.7318 5.0753 -0.4357 45 1 3.9668 6.7748 1.2548 46 1 4.3297 7.7051 -0.2311 47 1 3.8847 10.0739 1.4050 48 1 7.5895 5.8181 0.2780 49 1 7.0150 5.5746 1.9511 50 1 5.3129 -0.1052 0.0029 51 1 3.9653 -2.1657 0.0114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039249284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:19 Heat of formation + Delta-G solvation = 56.290012 kcal Electronic energy + Delta-G solvation = -31342.071492 eV Core-core repulsion = 27436.121682 eV Total energy + Delta-G solvation = -3905.949810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.34565 -40.87987 -38.85050 -38.38954 -35.40984 -34.37114 -33.55171 -33.30954 -32.39010 -30.94070 -29.08044 -28.42743 -27.20669 -26.07457 -25.16404 -23.85530 -23.63759 -22.36708 -21.54791 -21.07339 -20.32803 -18.85636 -18.14181 -17.82714 -17.31099 -17.20494 -16.66907 -16.59710 -15.98487 -15.70178 -15.55205 -15.43309 -15.16401 -14.81821 -14.72144 -14.39314 -14.23090 -14.02969 -13.87633 -13.73163 -13.61030 -13.30428 -13.16975 -13.08921 -12.85257 -12.75671 -12.67496 -12.31293 -12.08794 -12.04709 -11.92623 -11.72407 -11.59763 -11.48186 -11.38592 -11.16519 -10.83132 -10.69055 -10.60555 -10.06392 -9.83649 -9.53622 -8.86396 -7.88084 -5.24967 -0.29405 0.05085 1.42241 1.45419 1.55254 1.74659 1.85528 2.48294 2.74899 3.21374 3.30496 3.35388 3.65665 3.71815 3.77807 3.82222 3.90944 3.95054 4.01644 4.07353 4.18643 4.23079 4.32587 4.38964 4.40325 4.54123 4.59398 4.62857 4.68415 4.73739 4.75179 4.76996 4.87529 4.92818 4.94991 4.96624 5.03773 5.08452 5.14853 5.16019 5.20852 5.25584 5.29977 5.43193 5.46550 5.49847 5.61463 5.63855 5.68052 5.77710 6.18926 6.37419 6.92069 7.05797 7.13680 7.75234 8.45066 9.24074 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.003094 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.321093 B = 9047.737036 C =10773.421399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.121 3.879 3 C -0.138 4.138 4 C -0.087 4.087 5 C 0.536 3.464 6 O -0.540 6.540 7 N -0.592 5.592 8 C 0.053 3.947 9 C -0.131 4.131 10 C -0.116 4.116 11 C -0.130 4.130 12 C 0.167 3.833 13 H 0.072 0.928 14 C -0.077 4.077 15 H 0.084 0.916 16 C -0.110 4.110 17 C 0.187 3.813 18 N -0.626 5.626 19 C -0.246 4.246 20 H 0.082 0.918 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.983 3.017 24 H -0.286 1.286 25 H -0.264 1.264 26 H -0.292 1.292 27 C 0.136 3.864 28 C -0.167 4.167 29 C 0.105 3.895 30 N -0.491 5.491 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.080 0.920 45 H -0.018 1.018 46 H 0.026 0.974 47 H 0.247 0.753 48 H 0.039 0.961 49 H 0.009 0.991 50 H 0.192 0.808 51 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 -28.192 -7.703 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.016 4.016 3 C -0.159 4.159 4 C -0.098 4.098 5 C 0.325 3.675 6 O -0.420 6.420 7 N -0.324 5.324 8 C -0.067 4.067 9 C -0.169 4.169 10 C -0.153 4.153 11 C -0.168 4.168 12 C 0.064 3.936 13 H 0.090 0.910 14 C -0.096 4.096 15 H 0.102 0.898 16 C -0.148 4.148 17 C 0.062 3.938 18 N -0.352 5.352 19 C -0.375 4.375 20 H 0.100 0.900 21 C -0.263 4.263 22 N -0.601 5.601 23 Si 0.811 3.189 24 H -0.213 1.213 25 H -0.189 1.189 26 H -0.219 1.219 27 C 0.010 3.990 28 C -0.186 4.186 29 C -0.052 4.052 30 N -0.202 5.202 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.097 0.903 36 H 0.155 0.845 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.000 1.000 46 H 0.045 0.955 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.027 0.973 50 H 0.209 0.791 51 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.029 -28.221 -7.443 29.257 hybrid contribution 0.351 2.606 0.520 2.681 sum 2.380 -25.615 -6.923 26.641 Atomic orbital electron populations 1.20808 0.86861 1.04459 1.04022 1.21597 0.98438 0.87350 0.94246 1.22157 0.93610 1.00318 0.99778 1.20446 0.94496 0.93964 1.00928 1.18708 0.81832 0.87886 0.79039 1.90871 1.69928 1.34228 1.46933 1.48005 1.13487 1.14727 1.56146 1.23247 0.97664 0.88486 0.97332 1.21952 0.93999 0.98681 1.02223 1.21529 0.99151 0.94168 1.00466 1.22035 0.94583 1.00319 0.99877 1.21172 0.90409 0.83408 0.98583 0.91048 1.22425 0.94342 0.93786 0.99071 0.89781 1.23055 1.00016 0.95180 0.96598 1.21098 0.85428 0.93744 0.93569 1.44885 1.10532 1.02639 1.77170 1.19483 0.92458 0.85720 1.39843 0.90024 1.25805 0.95894 1.02367 1.02252 1.70228 1.03546 1.28900 1.57431 0.84999 0.77738 0.78756 0.77432 1.21264 1.18863 1.21864 1.21656 0.94982 0.85487 0.96849 1.23171 1.03781 0.91421 1.00193 1.23422 0.88632 0.99747 0.93381 1.67483 1.11529 1.29294 1.11897 0.89534 0.89650 0.89510 0.84865 0.90283 0.84519 0.87131 0.91147 0.91185 0.90061 0.90749 0.92174 0.93225 0.90207 1.00048 0.95533 0.94389 0.94352 0.97316 0.79130 0.78277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.16 71.24 0.72 -0.80 16 2 C 0.12 2.41 6.78 42.55 0.29 2.69 16 3 C -0.14 -3.21 9.32 22.63 0.21 -3.00 16 4 C -0.09 -1.97 5.64 -19.88 -0.11 -2.09 16 5 C 0.54 15.36 7.29 86.88 0.63 15.99 16 6 O -0.54 -20.68 9.88 -3.78 -0.04 -20.72 16 7 N -0.59 -13.87 2.98 -797.98 -2.38 -16.24 16 8 C 0.05 0.69 5.60 86.35 0.48 1.17 16 9 C -0.13 -1.25 5.70 30.67 0.17 -1.07 16 10 C -0.12 -1.62 5.88 30.62 0.18 -1.44 16 11 C -0.13 -2.95 4.65 30.67 0.14 -2.81 16 12 C 0.17 4.72 2.67 44.97 0.12 4.84 16 13 H 0.07 2.05 7.72 -2.39 -0.02 2.03 16 14 C -0.08 -3.06 1.94 -9.61 -0.02 -3.08 16 15 H 0.08 3.71 5.68 -13.13 -0.07 3.63 16 16 C -0.11 -4.97 5.87 32.06 0.19 -4.78 16 17 C 0.19 10.68 5.43 86.93 0.47 11.15 16 18 N -0.63 -35.86 3.39 -691.55 -2.35 -38.21 16 19 C -0.25 -14.88 10.24 84.03 0.86 -14.02 16 20 H 0.08 4.66 7.85 -2.91 -0.02 4.64 16 21 C -0.07 -4.28 5.40 84.86 0.46 -3.83 16 22 N -0.95 -61.96 10.68 21.65 0.23 -61.73 16 23 Si 0.98 48.15 29.56 68.60 2.03 50.18 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 27 C 0.14 6.17 5.85 86.73 0.51 6.68 16 28 C -0.17 -2.41 7.74 22.63 0.18 -2.23 16 29 C 0.11 1.40 11.17 84.67 0.95 2.35 16 30 N -0.49 -9.25 10.25 -184.04 -1.89 -11.14 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 3.35 7.95 -2.91 -0.02 3.33 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.14 1.33 2.91 -15.72 -0.05 1.29 16 37 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.70 7.92 -2.38 -0.02 0.68 16 39 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.85 6.36 -2.38 -0.02 1.83 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 2.12 7.77 -2.39 -0.02 2.10 16 44 H 0.08 3.62 5.76 -2.39 -0.01 3.61 16 45 H -0.02 -1.19 8.07 -2.39 -0.02 -1.21 16 46 H 0.03 1.66 6.95 -2.38 -0.02 1.64 16 47 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.04 1.61 6.33 -2.39 -0.02 1.60 16 49 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.19 1.63 4.55 -2.91 -0.01 1.62 16 51 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -82.18 380.79 2.88 -79.30 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.84 Total: 12.83 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 6.43 Total: 5.72 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -6.38 Total: -127.32 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.04 Total: -20.72 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -82.18 2.88 -79.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039249284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.586 kcal (2) G-P(sol) polarization free energy of solvation -82.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds