Wall clock time and date at job start Wed Apr 1 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38173 * 119.55257 * 2 1 4 4 C 1.39798 * 119.00284 * 180.02562 * 3 2 1 5 5 C 1.48148 * 120.92494 * 179.97438 * 4 3 2 6 6 O 1.21521 * 119.99519 * 38.72665 * 5 4 3 7 7 N 1.34768 * 120.00493 * 218.72668 * 5 4 3 8 8 C 1.46930 * 120.62721 * 357.67458 * 7 5 4 9 9 C 1.53191 * 108.77671 * 126.41098 * 8 7 5 10 10 C 1.53050 * 109.31157 * 54.63715 * 9 8 7 11 11 C 1.53048 * 109.53616 * 298.63501 * 10 9 8 12 12 C 1.46928 * 120.63573 * 177.69588 * 7 5 4 13 13 H 1.08993 * 109.58519 * 113.80175 * 12 7 5 14 14 C 1.52992 * 109.58449 * 353.51665 * 12 7 5 15 15 H 1.09003 * 110.88794 * 318.16876 * 14 12 7 16 16 C 1.55164 * 111.00344 * 82.04303 * 14 12 7 17 17 C 1.54323 * 102.94053 * 153.57553 * 16 14 12 18 18 N 1.47022 * 107.27368 * 337.80945 * 17 16 14 19 19 C 1.36938 * 125.65021 * 178.90548 * 18 17 16 20 20 H 1.07999 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99926 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99975 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99898 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46918 * 119.99880 * 23 21 19 26 26 H 1.48504 * 109.46779 * 239.99918 * 23 21 19 27 27 C 1.47469 * 108.72390 * 358.97272 * 18 17 16 28 28 C 1.39834 * 118.15288 * 0.25088 * 4 3 2 29 29 C 1.38133 * 119.00357 * 359.51929 * 28 4 3 30 30 N 1.31794 * 119.55354 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47369 * 90.00208 * 1 2 3 32 32 H 1.09000 * 109.47193 * 210.00478 * 1 2 3 33 33 H 1.09001 * 109.47142 * 330.00165 * 1 2 3 34 34 H 1.08003 * 120.49906 * 359.97438 * 3 2 1 35 35 H 1.08994 * 109.58705 * 246.20018 * 8 7 5 36 36 H 1.09001 * 109.58903 * 6.62546 * 8 7 5 37 37 H 1.08998 * 109.50233 * 174.58327 * 9 8 7 38 38 H 1.08994 * 109.50298 * 294.68679 * 9 8 7 39 39 H 1.09000 * 109.45776 * 178.61364 * 10 9 8 40 40 H 1.08992 * 109.44726 * 58.64573 * 10 9 8 41 41 H 1.08997 * 109.49225 * 301.41287 * 11 10 9 42 42 H 1.08993 * 109.52217 * 181.33623 * 11 10 9 43 43 H 1.09000 * 110.71965 * 271.93912 * 16 14 12 44 44 H 1.08993 * 110.71739 * 35.21517 * 16 14 12 45 45 H 1.08999 * 109.88194 * 97.22321 * 17 16 14 46 46 H 1.09001 * 109.88429 * 218.23774 * 17 16 14 47 47 H 0.97001 * 119.99908 * 180.02562 * 22 21 19 48 48 H 1.08994 * 110.35009 * 265.25755 * 27 18 17 49 49 H 1.09002 * 110.40714 * 142.91395 * 27 18 17 50 50 H 1.07997 * 120.49935 * 179.72796 * 28 4 3 51 51 H 1.07993 * 119.54996 * 180.22614 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1886 -0.0005 5 6 4.3599 2.4521 -0.0011 6 8 3.9771 3.3990 0.6572 7 7 5.4880 2.5513 -0.7317 8 6 5.9910 1.3992 -1.4924 9 6 6.1945 1.8220 -2.9507 10 6 7.1036 3.0523 -2.9988 11 6 6.4394 4.2092 -2.2486 12 6 6.2386 3.8134 -0.7824 13 1 7.2087 3.6810 -0.3036 14 6 5.4530 4.9068 -0.0559 15 1 4.3915 4.8478 -0.2965 16 6 5.6807 4.8300 1.4770 17 6 5.4377 6.2833 1.9357 18 7 5.6404 7.1501 0.7656 19 6 5.4987 8.5120 0.7471 20 1 5.6705 9.0605 -0.1673 21 6 5.1343 9.1877 1.9036 22 7 4.9244 8.5193 3.0178 23 14 4.9403 11.0455 1.8781 24 1 5.2300 11.5547 0.5137 25 1 3.5493 11.4031 2.2555 26 1 5.8880 11.6553 2.8452 27 6 6.0200 6.3102 -0.3856 28 6 4.2343 -0.0506 -0.0065 29 6 3.4741 -1.2039 -0.0014 30 7 2.1570 -1.1465 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6493 2.1378 -0.0004 35 1 6.9409 1.0700 -1.0714 36 1 5.2667 0.5860 -1.4455 37 1 6.6575 1.0057 -3.5050 38 1 5.2302 2.0646 -3.3972 39 1 7.2699 3.3405 -4.0368 40 1 8.0587 2.8163 -2.5299 41 1 5.4728 4.4292 -2.7017 42 1 7.0761 5.0921 -2.3033 43 1 4.9619 4.1541 1.9403 44 1 6.7017 4.5208 1.7002 45 1 4.4173 6.3902 2.3038 46 1 6.1449 6.5470 2.7222 47 1 4.6693 8.9914 3.8259 48 1 7.1048 6.2679 -0.4825 49 1 5.5712 6.6952 -1.3013 50 1 5.3129 -0.1052 -0.0115 51 1 3.9653 -2.1656 -0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039249285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:24 Heat of formation + Delta-G solvation = 63.665094 kcal Electronic energy + Delta-G solvation = -31359.342912 eV Core-core repulsion = 27453.712910 eV Total energy + Delta-G solvation = -3905.630003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26831 -39.94329 -37.45862 -36.93332 -34.08432 -32.95303 -32.73997 -32.19405 -30.99937 -29.01795 -28.00349 -27.20052 -25.77813 -24.49011 -24.19360 -22.89357 -22.62472 -21.01265 -19.84080 -19.63961 -19.36210 -17.33186 -16.73867 -16.68209 -16.29235 -15.84745 -15.38598 -15.29675 -14.77596 -14.52176 -14.47919 -14.05505 -14.01841 -13.75363 -13.62503 -13.46136 -13.14436 -12.94741 -12.69608 -12.50399 -12.15510 -12.09963 -12.05088 -11.77463 -11.65656 -11.33505 -11.10285 -10.90912 -10.80828 -10.72718 -10.61916 -10.09183 -10.05604 -9.92331 -9.86681 -9.60099 -9.54671 -9.41570 -9.16901 -8.84103 -8.46066 -8.38039 -6.65315 -5.56849 -2.89844 0.62018 0.80884 2.70608 2.86873 3.46701 3.51273 3.51884 3.54357 3.99875 4.15926 4.47330 4.54178 4.60586 4.66387 4.72653 4.76080 4.81411 4.95322 5.12109 5.15677 5.18643 5.26073 5.33977 5.35154 5.46452 5.52596 5.58037 5.61693 5.64405 5.72236 5.74018 5.77477 5.82801 5.86099 5.97235 6.02601 6.08591 6.13970 6.28500 6.35625 6.37939 6.51277 6.61845 6.76641 6.95447 7.09525 7.30396 7.37777 7.67155 7.72096 7.90238 8.03397 8.25786 8.42725 9.36930 9.97984 10.66305 11.54284 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.003193 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.652980 B = 8766.366784 C =10270.919769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.126 3.874 3 C -0.121 4.121 4 C -0.070 4.070 5 C 0.538 3.462 6 O -0.482 6.482 7 N -0.598 5.598 8 C 0.085 3.915 9 C -0.134 4.134 10 C -0.120 4.120 11 C -0.132 4.132 12 C 0.161 3.839 13 H 0.071 0.929 14 C -0.094 4.094 15 H 0.102 0.898 16 C -0.131 4.131 17 C 0.181 3.819 18 N -0.605 5.605 19 C -0.224 4.224 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.139 3.861 28 C -0.163 4.163 29 C 0.099 3.901 30 N -0.477 5.477 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.249 0.751 48 H 0.011 0.989 49 H 0.033 0.967 50 H 0.147 0.853 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 -22.799 -11.674 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 C -0.142 4.142 4 C -0.081 4.081 5 C 0.326 3.674 6 O -0.357 6.357 7 N -0.331 5.331 8 C -0.038 4.038 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.170 4.170 12 C 0.059 3.941 13 H 0.089 0.911 14 C -0.113 4.113 15 H 0.120 0.880 16 C -0.169 4.169 17 C 0.057 3.943 18 N -0.331 5.331 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.012 3.988 28 C -0.183 4.183 29 C -0.058 4.058 30 N -0.187 5.187 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.051 0.949 50 H 0.165 0.835 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.110 -22.848 -11.158 25.451 hybrid contribution 0.654 1.713 0.019 1.833 sum -0.456 -21.135 -11.139 23.895 Atomic orbital electron populations 1.20744 0.88330 1.03862 1.03284 1.21292 0.97291 0.87801 0.94727 1.22100 0.93175 1.00116 0.98805 1.20553 0.94547 0.94168 0.98806 1.18283 0.81234 0.87251 0.80651 1.90946 1.68332 1.36461 1.39979 1.47947 1.24870 1.12836 1.47483 1.22384 1.00346 0.89217 0.91819 1.21924 1.00777 0.98594 0.95978 1.21550 0.98566 0.95053 1.00640 1.22026 1.01781 0.98405 0.94769 1.21400 0.94663 0.82400 0.95684 0.91098 1.22794 1.00439 0.92153 0.95959 0.88001 1.23205 0.98846 1.00113 0.94763 1.21080 1.00013 0.84244 0.88981 1.44502 1.80773 1.02445 1.05391 1.19100 1.39525 0.80959 0.95712 0.90639 1.24802 1.02192 0.97876 0.95830 1.70022 1.53517 1.33232 0.99998 0.86079 0.77305 0.85445 0.77170 1.20606 1.21856 1.21892 1.21645 0.95664 0.89972 0.91505 1.22528 1.01926 0.92572 1.01287 1.22706 0.89244 0.98270 0.95546 1.67385 1.10263 1.29479 1.11608 0.90222 0.90282 0.90278 0.83745 0.91094 0.88278 0.90891 0.91543 0.91708 0.91801 0.91420 0.89938 0.89876 0.94434 0.93894 0.94765 0.94014 0.97125 0.94895 0.83546 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.00 0.37 -0.45 16 2 C 0.13 1.33 6.78 -82.63 -0.56 0.77 16 3 C -0.12 -1.41 9.39 -39.02 -0.37 -1.78 16 4 C -0.07 -0.83 5.39 -104.65 -0.56 -1.39 16 5 C 0.54 7.76 7.20 -12.19 -0.09 7.67 16 6 O -0.48 -8.94 9.88 5.35 0.05 -8.88 16 7 N -0.60 -7.41 2.97 -166.22 -0.49 -7.91 16 8 C 0.08 0.72 5.05 -3.71 -0.02 0.70 16 9 C -0.13 -1.05 6.08 -26.61 -0.16 -1.22 16 10 C -0.12 -1.08 5.88 -26.68 -0.16 -1.23 16 11 C -0.13 -1.59 4.77 -26.61 -0.13 -1.72 16 12 C 0.16 2.30 2.64 -67.60 -0.18 2.12 16 13 H 0.07 1.02 7.77 -51.93 -0.40 0.61 16 14 C -0.09 -1.80 1.95 -88.47 -0.17 -1.97 16 15 H 0.10 2.17 5.89 -52.06 -0.31 1.86 16 16 C -0.13 -2.82 5.69 -24.89 -0.14 -2.96 16 17 C 0.18 4.88 5.37 -3.06 -0.02 4.86 16 18 N -0.61 -16.63 3.40 -170.04 -0.58 -17.20 16 19 C -0.22 -6.62 10.28 -15.06 -0.15 -6.77 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -28.64 10.31 55.49 0.57 -28.06 16 23 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 C 0.14 3.04 5.32 -2.50 -0.01 3.03 16 28 C -0.16 -1.48 7.47 -39.02 -0.29 -1.77 16 29 C 0.10 0.87 11.17 -17.59 -0.20 0.67 16 30 N -0.48 -5.12 10.25 -9.52 -0.10 -5.22 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.73 3.90 -51.93 -0.20 0.53 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.04 6.98 -51.93 -0.36 0.67 16 43 H 0.08 1.82 5.56 -52.05 -0.29 1.53 16 44 H 0.04 0.76 7.79 -51.93 -0.40 0.35 16 45 H 0.04 1.29 7.38 -51.93 -0.38 0.91 16 46 H 0.03 1.01 7.51 -51.93 -0.39 0.62 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.01 0.24 7.62 -51.93 -0.40 -0.16 16 49 H 0.03 0.70 8.12 -51.93 -0.42 0.28 16 50 H 0.15 1.00 6.01 -52.49 -0.32 0.69 16 51 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -35.22 383.77 -10.79 -46.01 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.07 Total: -0.69 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.94 Total: -1.87 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.60 Total: -58.39 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.05 Total: -8.88 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.22 -10.79 -46.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039249285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.676 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds