Wall clock time and date at job start Wed Apr 1 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38176 * 119.55621 * 2 1 4 4 C 1.39790 * 119.00314 * 180.26968 * 3 2 1 5 5 C 1.48149 * 120.92503 * 179.75017 * 4 3 2 6 6 O 1.21515 * 119.99650 * 29.68870 * 5 4 3 7 7 N 1.34771 * 120.00213 * 209.68739 * 5 4 3 8 8 C 1.46930 * 120.62844 * 359.59476 * 7 5 4 9 9 C 1.53629 * 108.54085 * 126.36927 * 8 7 5 10 10 C 1.53050 * 109.23920 * 54.85644 * 9 8 7 11 11 C 1.53033 * 109.53616 * 298.50853 * 10 9 8 12 12 C 1.46923 * 120.63462 * 179.87832 * 7 5 4 13 13 H 1.09000 * 109.59227 * 113.79135 * 12 7 5 14 14 C 1.53007 * 109.58068 * 353.37209 * 12 7 5 15 15 H 1.08990 * 110.64264 * 48.02322 * 14 12 7 16 16 C 1.55157 * 110.71992 * 284.87614 * 14 12 7 17 17 C 1.54915 * 101.58133 * 206.13799 * 16 14 12 18 18 N 1.47425 * 104.82979 * 37.01174 * 17 16 14 19 19 C 1.36937 * 125.64405 * 155.83810 * 18 17 16 20 20 H 1.08000 * 119.99960 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00159 * 0.02562 * 19 18 17 22 22 N 1.31620 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99913 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47091 * 60.00039 * 23 21 19 25 25 H 1.48506 * 109.47167 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47233 * 299.99808 * 23 21 19 27 27 C 1.47020 * 108.70568 * 335.86761 * 18 17 16 28 28 C 1.39842 * 118.15409 * 359.48490 * 4 3 2 29 29 C 1.38130 * 119.00118 * 0.26866 * 28 4 3 30 30 N 1.31802 * 119.54964 * 179.74189 * 2 1 3 31 31 H 1.09002 * 109.47185 * 270.25865 * 1 2 3 32 32 H 1.09004 * 109.46888 * 30.25240 * 1 2 3 33 33 H 1.08997 * 109.47160 * 150.25990 * 1 2 3 34 34 H 1.08000 * 120.49348 * 0.03319 * 3 2 1 35 35 H 1.09006 * 109.58582 * 246.19849 * 8 7 5 36 36 H 1.08990 * 109.59016 * 6.63202 * 8 7 5 37 37 H 1.08993 * 109.63639 * 294.86700 * 9 8 7 38 38 H 1.09005 * 109.45866 * 174.73733 * 9 8 7 39 39 H 1.09007 * 109.45482 * 178.49241 * 10 9 8 40 40 H 1.08999 * 109.44928 * 58.52654 * 10 9 8 41 41 H 1.08997 * 109.49974 * 301.41451 * 11 10 9 42 42 H 1.09006 * 109.49741 * 181.32032 * 11 10 9 43 43 H 1.09004 * 111.00347 * 324.20942 * 16 14 12 44 44 H 1.08998 * 111.00674 * 88.06288 * 16 14 12 45 45 H 1.09000 * 110.36437 * 155.84780 * 17 16 14 46 46 H 1.08999 * 110.36516 * 278.05986 * 17 16 14 47 47 H 0.97000 * 120.00028 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.88388 * 241.64353 * 27 18 17 49 49 H 1.08998 * 109.87613 * 120.47803 * 27 18 17 50 50 H 1.08000 * 120.50245 * 180.24728 * 28 4 3 51 51 H 1.07998 * 119.54773 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2020 0.0000 4 6 3.5864 1.1885 -0.0058 5 6 4.3600 2.4519 -0.0115 6 8 3.8996 3.4485 0.5096 7 7 5.5742 2.4961 -0.5947 8 6 6.1478 1.2971 -1.2210 9 6 6.5429 1.6418 -2.6650 10 6 7.4770 2.8542 -2.6566 11 6 6.7473 4.0582 -2.0568 12 6 6.3521 3.7423 -0.6108 13 1 7.2500 3.6206 -0.0048 14 6 5.5024 4.8845 -0.0501 15 1 5.0277 4.5871 0.8848 16 6 4.4396 5.3376 -1.0857 17 6 4.2033 6.8097 -0.6650 18 7 5.5308 7.3027 -0.2549 19 6 5.9288 8.6129 -0.2497 20 1 6.9273 8.8727 0.0695 21 6 5.0490 9.6073 -0.6549 22 7 3.8323 9.2907 -1.0444 23 14 5.5918 11.3946 -0.6471 24 1 6.7606 11.5609 -1.5480 25 1 4.4762 12.2528 -1.1208 26 1 5.9702 11.7910 0.7331 27 6 6.3566 6.1547 0.1469 28 6 4.2343 -0.0508 -0.0002 29 6 3.4740 -1.2040 0.0050 30 7 2.1570 -1.1466 0.0052 31 1 -0.3634 0.0046 1.0277 32 1 -0.3633 0.8878 -0.5178 33 1 -0.3633 -0.8923 -0.5098 34 1 1.6494 2.1377 0.0005 35 1 7.0294 0.9800 -0.6638 36 1 5.4077 0.4970 -1.2244 37 1 5.6492 1.8752 -3.2435 38 1 7.0552 0.7910 -3.1143 39 1 7.7810 3.0854 -3.6775 40 1 8.3591 2.6286 -2.0573 41 1 5.8516 4.2689 -2.6410 42 1 7.4052 4.9272 -2.0726 43 1 4.8333 5.2797 -2.1005 44 1 3.5253 4.7521 -0.9890 45 1 3.8272 7.3894 -1.5080 46 1 3.5042 6.8581 0.1698 47 1 3.2176 9.9855 -1.3279 48 1 6.6412 6.2513 1.1946 49 1 7.2480 6.1025 -0.4783 50 1 5.3130 -0.1054 -0.0003 51 1 3.9653 -2.1658 0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039249286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:28 Heat of formation + Delta-G solvation = 80.777210 kcal Electronic energy + Delta-G solvation = -31508.597246 eV Core-core repulsion = 27603.709280 eV Total energy + Delta-G solvation = -3904.887966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34916 -39.97913 -37.51686 -36.89889 -34.17099 -32.93676 -32.70451 -32.23227 -30.85217 -28.82146 -28.05754 -27.42516 -25.75170 -24.45760 -24.26323 -22.90866 -22.74098 -21.02917 -20.18950 -19.70953 -18.81112 -17.24984 -16.78128 -16.61287 -16.39803 -15.56548 -15.44895 -15.33588 -14.84792 -14.64003 -14.42786 -14.40041 -13.92493 -13.73360 -13.65189 -13.30977 -13.18947 -12.72393 -12.71382 -12.48370 -12.43658 -12.17670 -11.92848 -11.63222 -11.47209 -11.22464 -11.04083 -10.91867 -10.75474 -10.66452 -10.57069 -10.23091 -10.07285 -9.94908 -9.83967 -9.60343 -9.59764 -9.31502 -9.15366 -8.71916 -8.48050 -8.29722 -6.66574 -5.51829 -2.93109 0.56966 0.79572 2.70956 2.88089 3.46273 3.50027 3.51752 3.53538 3.98613 4.13889 4.44699 4.55810 4.59169 4.65203 4.73828 4.80803 4.84436 5.04086 5.12301 5.15270 5.22311 5.27103 5.35170 5.37573 5.46649 5.50625 5.60237 5.62642 5.65648 5.75960 5.76852 5.81264 5.84436 5.87908 5.98264 6.08142 6.13634 6.19652 6.31801 6.34904 6.47726 6.61502 6.69611 6.86916 6.97269 7.05838 7.32945 7.41341 7.65810 7.72038 7.81394 8.03185 8.23357 8.51749 9.35962 9.97503 10.65246 11.51055 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.003118 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.899957 B = 8978.195640 C =10336.186647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.126 3.874 3 C -0.118 4.118 4 C -0.073 4.073 5 C 0.548 3.452 6 O -0.492 6.492 7 N -0.594 5.594 8 C 0.071 3.929 9 C -0.134 4.134 10 C -0.120 4.120 11 C -0.139 4.139 12 C 0.162 3.838 13 H 0.070 0.930 14 C -0.114 4.114 15 H 0.124 0.876 16 C -0.133 4.133 17 C 0.157 3.843 18 N -0.603 5.603 19 C -0.219 4.219 20 H 0.074 0.926 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.138 3.862 28 C -0.173 4.173 29 C 0.098 3.902 30 N -0.476 5.476 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.008 0.992 47 H 0.250 0.750 48 H 0.014 0.986 49 H 0.017 0.983 50 H 0.158 0.842 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -24.701 -1.889 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.012 4.012 3 C -0.138 4.138 4 C -0.084 4.084 5 C 0.335 3.665 6 O -0.368 6.368 7 N -0.327 5.327 8 C -0.051 4.051 9 C -0.172 4.172 10 C -0.158 4.158 11 C -0.177 4.177 12 C 0.060 3.940 13 H 0.088 0.912 14 C -0.133 4.133 15 H 0.141 0.859 16 C -0.171 4.171 17 C 0.033 3.967 18 N -0.328 5.328 19 C -0.348 4.348 20 H 0.092 0.908 21 C -0.209 4.209 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.011 3.989 28 C -0.193 4.193 29 C -0.059 4.059 30 N -0.187 5.187 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.026 0.974 47 H 0.061 0.939 48 H 0.032 0.968 49 H 0.034 0.966 50 H 0.175 0.825 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.675 -24.684 -1.654 24.749 hybrid contribution 1.057 1.689 -0.009 1.992 sum 1.732 -22.996 -1.663 23.121 Atomic orbital electron populations 1.20749 0.88285 1.03769 1.03430 1.21314 0.97328 0.87787 0.94726 1.22138 0.93228 1.00200 0.98274 1.20572 0.94609 0.94065 0.99190 1.18252 0.81197 0.87288 0.79717 1.90808 1.68506 1.33155 1.44316 1.47949 1.17260 1.11718 1.55807 1.22853 0.99713 0.88617 0.93884 1.21998 1.00388 0.98753 0.96085 1.21556 0.98016 0.95039 1.01190 1.22196 1.01652 0.97936 0.95918 1.21334 0.93563 0.82708 0.96403 0.91201 1.23136 0.95561 0.91925 1.02654 0.85852 1.23235 0.97547 0.99605 0.96755 1.21832 0.86561 0.88825 0.99531 1.44480 1.10552 1.01210 1.76587 1.19037 0.97403 0.81489 1.36852 0.90804 1.24772 0.96034 0.97923 1.02135 1.69838 1.05605 1.30797 1.50803 0.86190 0.77151 0.84734 0.77643 1.21319 1.21655 1.21344 1.21399 0.93535 0.87751 0.96225 1.22831 1.02366 0.92694 1.01377 1.22727 0.89264 0.98293 0.95571 1.67386 1.10297 1.29511 1.11465 0.90114 0.90279 0.90316 0.83517 0.90996 0.87147 0.91438 0.90976 0.91776 0.92066 0.90148 0.90016 0.92707 0.92106 0.88306 0.97400 0.93903 0.96769 0.96559 0.82529 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 36.00 0.37 -0.45 16 2 C 0.13 1.32 6.78 -82.63 -0.56 0.76 16 3 C -0.12 -1.37 9.33 -39.02 -0.36 -1.73 16 4 C -0.07 -0.86 5.59 -104.65 -0.58 -1.44 16 5 C 0.55 7.83 7.11 -12.19 -0.09 7.74 16 6 O -0.49 -8.92 10.40 5.35 0.06 -8.87 16 7 N -0.59 -7.43 2.96 -165.95 -0.49 -7.92 16 8 C 0.07 0.61 4.94 -3.48 -0.02 0.59 16 9 C -0.13 -1.14 6.10 -26.38 -0.16 -1.30 16 10 C -0.12 -1.21 5.88 -26.69 -0.16 -1.37 16 11 C -0.14 -1.92 4.67 -26.62 -0.12 -2.04 16 12 C 0.16 2.37 2.64 -67.60 -0.18 2.19 16 13 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.11 -2.19 2.06 -88.78 -0.18 -2.38 16 15 H 0.12 2.60 5.28 -55.47 -0.29 2.30 16 16 C -0.13 -2.81 5.56 -24.58 -0.14 -2.95 16 17 C 0.16 4.16 5.89 -2.53 -0.01 4.15 16 18 N -0.60 -16.42 3.39 -170.07 -0.58 -17.00 16 19 C -0.22 -6.41 10.27 -15.06 -0.15 -6.56 16 20 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 22 N -0.92 -28.11 10.09 55.49 0.56 -27.55 16 23 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 C 0.14 3.07 6.70 -3.06 -0.02 3.05 16 28 C -0.17 -1.51 7.60 -39.02 -0.30 -1.81 16 29 C 0.10 0.83 11.17 -17.59 -0.20 0.64 16 30 N -0.48 -5.04 10.25 -9.52 -0.10 -5.14 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.15 1.73 7.99 -52.49 -0.42 1.31 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.80 3.49 -53.89 -0.19 0.61 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.25 5.58 -51.93 -0.29 0.96 16 42 H 0.08 1.24 6.87 -51.93 -0.36 0.88 16 43 H 0.05 1.12 5.19 -51.93 -0.27 0.85 16 44 H 0.06 1.27 6.23 -51.93 -0.32 0.95 16 45 H 0.10 2.90 5.87 -51.93 -0.30 2.59 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.02 0.35 6.49 -51.93 -0.34 0.02 16 50 H 0.16 0.99 5.22 -52.49 -0.27 0.71 16 51 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -34.41 377.82 -10.52 -44.93 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.67 Total: 1.41 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.97 Total: -3.40 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.61 Total: -57.61 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.06 Total: -8.87 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.41 -10.52 -44.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039249286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.709 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds