Wall clock time and date at job start Wed Apr 1 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38354 * 119.46605 * 2 1 4 4 C 1.38352 * 119.30806 * 179.72101 * 3 2 1 5 5 C 1.50699 * 120.86051 * 180.29700 * 4 3 2 6 6 C 1.40026 * 118.28445 * 0.55142 * 4 3 2 7 7 C 1.47850 * 120.55585 * 179.73580 * 6 4 3 8 8 O 1.21549 * 119.99891 * 255.42627 * 7 6 4 9 9 N 1.34771 * 119.99863 * 75.43589 * 7 6 4 10 10 C 1.46953 * 120.43979 * 356.06268 * 9 7 6 11 11 C 1.53588 * 108.55333 * 126.05203 * 10 9 7 12 12 H 1.08998 * 110.60077 * 172.72462 * 11 10 9 13 13 C 1.53374 * 108.68636 * 294.31651 * 11 10 9 14 14 C 1.53013 * 109.25174 * 60.25637 * 13 11 10 15 15 C 1.53003 * 109.79934 * 60.57994 * 14 13 11 16 16 C 1.53375 * 109.27764 * 299.43882 * 15 14 13 17 17 H 1.09004 * 110.59380 * 178.09421 * 16 15 14 18 18 C 1.46944 * 120.44292 * 176.34744 * 9 7 6 19 19 N 1.47566 * 107.98278 * 56.33909 * 16 15 14 20 20 C 1.36937 * 121.61477 * 122.27994 * 19 16 15 21 21 H 1.08005 * 119.99548 * 329.17816 * 20 19 16 22 22 C 1.38810 * 120.00056 * 149.17510 * 20 19 16 23 23 N 1.31621 * 120.00238 * 343.10777 * 22 20 19 24 24 Si 1.86803 * 119.99870 * 163.11066 * 22 20 19 25 25 H 1.48502 * 109.47179 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47490 * 119.99928 * 24 22 20 27 27 H 1.48507 * 109.46910 * 240.00078 * 24 22 20 28 28 C 1.39518 * 118.88341 * 359.47248 * 6 4 3 29 29 C 1.50699 * 119.71547 * 180.26873 * 28 6 4 30 30 N 1.31697 * 120.56746 * 0.24516 * 28 6 4 31 31 H 1.09000 * 109.47522 * 269.98209 * 1 2 3 32 32 H 1.09004 * 109.46617 * 29.98324 * 1 2 3 33 33 H 1.08998 * 109.47002 * 149.97631 * 1 2 3 34 34 H 1.08005 * 120.34544 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.46793 * 270.26762 * 5 4 3 36 36 H 1.09002 * 109.46858 * 30.26614 * 5 4 3 37 37 H 1.08997 * 109.47485 * 150.26637 * 5 4 3 38 38 H 1.09003 * 109.61986 * 245.76455 * 10 9 7 39 39 H 1.08995 * 109.62634 * 6.32919 * 10 9 7 40 40 H 1.09003 * 109.50910 * 300.32747 * 13 11 10 41 41 H 1.09004 * 109.54480 * 180.21278 * 13 11 10 42 42 H 1.08995 * 109.41782 * 300.47590 * 14 13 11 43 43 H 1.09003 * 109.36172 * 180.63927 * 14 13 11 44 44 H 1.08998 * 109.50948 * 179.49875 * 15 14 13 45 45 H 1.09005 * 109.50586 * 59.37711 * 15 14 13 46 46 H 1.08997 * 109.62711 * 353.67998 * 18 9 7 47 47 H 1.08997 * 109.63005 * 114.06378 * 18 9 7 48 48 H 0.97003 * 119.99835 * 179.97438 * 23 22 20 49 49 H 1.09008 * 109.46839 * 95.88459 * 29 28 6 50 50 H 1.09001 * 109.46877 * 215.87785 * 29 28 6 51 51 H 1.08991 * 109.47294 * 335.88357 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0059 5 6 4.3476 2.4923 0.0128 6 6 4.2312 -0.0341 -0.0002 7 6 5.7083 -0.0967 -0.0003 8 8 6.3045 -0.3820 -1.0204 9 7 6.3938 0.1623 1.1309 10 6 5.6889 0.5916 2.3468 11 6 6.0838 -0.3460 3.4974 12 1 5.6817 0.0171 4.4432 13 6 5.5534 -1.7518 3.1898 14 6 6.1719 -2.2494 1.8817 15 6 7.6944 -2.3120 2.0192 16 6 8.2336 -0.9086 2.3228 17 1 9.3149 -0.9343 2.4584 18 6 7.8564 0.0251 1.1630 19 7 7.5575 -0.4137 3.5375 20 6 8.2633 -0.0356 4.6483 21 1 9.2035 -0.5143 4.8795 22 6 7.7705 0.9628 5.4772 23 7 6.8242 1.7693 5.0453 24 14 8.4503 1.1620 7.2057 25 1 9.4982 0.1376 7.4465 26 1 9.0392 2.5173 7.3530 27 1 7.3536 0.9888 8.1919 28 6 3.4715 -1.2044 -0.0007 29 6 4.1626 -2.5435 -0.0011 30 7 2.1557 -1.1487 -0.0003 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6444 2.1381 0.0004 35 1 4.5350 2.8089 -1.0132 36 1 3.7719 3.2596 0.5305 37 1 5.2974 2.3424 0.5261 38 1 5.9744 1.6142 2.5935 39 1 4.6125 0.5382 2.1841 40 1 4.4685 -1.7177 3.0896 41 1 5.8230 -2.4287 4.0005 42 1 5.9088 -1.5667 1.0738 43 1 5.7874 -3.2439 1.6555 44 1 8.1294 -2.6753 1.0881 45 1 7.9590 -2.9873 2.8329 46 1 8.2050 -0.4006 0.2221 47 1 8.3127 1.0034 1.3136 48 1 6.4796 2.4668 5.6247 49 1 4.2355 -2.9151 1.0211 50 1 3.5893 -3.2481 -0.6036 51 1 5.1627 -2.4362 -0.4208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039784592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:35 Heat of formation + Delta-G solvation = 48.844597 kcal Electronic energy + Delta-G solvation = -33373.201587 eV Core-core repulsion = 29466.928919 eV Total energy + Delta-G solvation = -3906.272668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.34767 -39.70675 -37.64292 -34.50647 -33.92381 -33.60896 -32.90439 -31.86994 -30.41129 -29.10857 -27.94544 -27.47835 -26.61242 -25.52212 -23.64859 -22.32809 -21.80271 -21.24296 -20.95845 -19.50860 -18.39207 -17.52615 -16.95999 -16.02332 -15.83536 -15.09429 -14.77789 -14.69455 -14.65347 -14.16833 -14.01861 -13.59628 -13.33129 -13.28926 -13.20255 -13.08996 -12.91894 -12.79707 -12.66866 -12.51712 -12.34364 -12.27455 -11.94892 -11.77144 -11.59457 -11.56461 -11.35326 -10.99433 -10.95832 -10.78335 -10.37471 -10.21000 -10.14430 -10.09242 -9.93968 -9.55984 -9.41111 -9.37243 -9.18128 -8.70910 -8.63018 -7.82605 -6.64516 -5.93313 -3.36210 0.96671 1.25043 2.85811 3.29848 3.38716 3.39954 3.42693 3.71166 4.17950 4.38941 4.57589 4.60630 4.79618 5.06209 5.13643 5.24836 5.31210 5.38582 5.40863 5.47345 5.54603 5.57876 5.60920 5.63884 5.67772 5.71967 5.80634 5.81398 5.84657 5.92805 5.99276 6.03267 6.13580 6.18038 6.22459 6.27855 6.33720 6.37457 6.41884 6.47665 6.56452 6.63223 6.69558 6.71053 6.83477 6.97997 7.04858 7.18221 7.41793 7.70272 7.88951 8.01503 8.30406 8.48861 9.05941 9.67265 10.30932 11.15520 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004446 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.275408 B = 6296.459402 C = 6888.439460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.142 3.858 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.128 4.128 6 C -0.174 4.174 7 C 0.566 3.434 8 O -0.551 6.551 9 N -0.579 5.579 10 C 0.102 3.898 11 C 0.183 3.817 12 H 0.108 0.892 13 C -0.133 4.133 14 C -0.148 4.148 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.080 0.920 18 C 0.099 3.901 19 N -0.577 5.577 20 C -0.249 4.249 21 H 0.066 0.934 22 C 0.008 3.992 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.178 3.822 29 C -0.123 4.123 30 N -0.490 5.490 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.040 0.960 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.254 0.746 49 H 0.095 0.905 50 H 0.076 0.924 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 -1.697 -8.581 12.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.004 3.996 3 C -0.205 4.205 4 C -0.010 4.010 5 C -0.184 4.184 6 C -0.179 4.179 7 C 0.354 3.646 8 O -0.431 6.431 9 N -0.310 5.310 10 C -0.021 4.021 11 C 0.075 3.925 12 H 0.126 0.874 13 C -0.172 4.172 14 C -0.185 4.185 15 C -0.163 4.163 16 C 0.046 3.954 17 H 0.098 0.902 18 C -0.025 4.025 19 N -0.298 5.298 20 C -0.378 4.378 21 H 0.084 0.916 22 C -0.191 4.191 23 N -0.545 5.545 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.040 3.960 29 C -0.180 4.180 30 N -0.201 5.201 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.113 0.887 50 H 0.095 0.905 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.264 -2.451 -8.961 13.120 hybrid contribution 0.661 1.079 1.076 1.661 sum -8.603 -1.373 -7.885 11.750 Atomic orbital electron populations 1.20719 0.88747 1.03342 1.03195 1.21344 0.96950 0.88167 0.93116 1.21698 0.93651 0.99379 1.05763 1.20345 0.93812 0.94565 0.92276 1.21000 1.00829 0.93412 1.03156 1.20661 0.94872 0.94519 1.07898 1.17807 0.86254 0.77086 0.83433 1.90752 1.69904 1.50305 1.32160 1.48280 1.08065 1.63886 1.10757 1.22476 0.94233 1.01399 0.83991 1.20955 0.84512 0.89741 0.97271 0.87407 1.22124 0.97756 1.00151 0.97197 1.22585 0.95988 0.99942 1.00026 1.21958 0.96135 0.98517 0.99725 1.21242 0.96502 0.90996 0.86667 0.90236 1.22304 0.78863 1.01058 1.00252 1.44318 1.00282 1.74948 1.10287 1.19167 1.05273 1.13563 0.99832 0.91627 1.25035 0.99306 0.95113 0.99617 1.69945 1.30964 1.18452 1.35104 0.86235 0.78374 0.77477 0.84713 1.20285 1.21749 1.21597 1.21204 0.88716 0.94615 0.91481 1.21378 1.00302 0.92110 1.04215 1.67348 1.08841 1.29052 1.14842 0.90213 0.90730 0.90469 0.84504 0.90269 0.90303 0.90071 0.89105 0.92340 0.93992 0.92630 0.89265 0.94099 0.93360 0.92556 0.90337 0.91500 0.93605 0.88672 0.90533 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.16 36.00 0.37 -0.57 16 2 C 0.14 1.86 6.78 -82.51 -0.56 1.30 16 3 C -0.19 -2.34 9.43 -39.50 -0.37 -2.71 16 4 C 0.00 -0.03 5.03 -103.91 -0.52 -0.55 16 5 C -0.13 -1.68 9.56 36.01 0.34 -1.34 16 6 C -0.17 -2.92 3.99 -104.82 -0.42 -3.34 16 7 C 0.57 10.42 2.80 -12.33 -0.03 10.39 16 8 O -0.55 -11.40 15.88 5.32 0.08 -11.31 16 9 N -0.58 -10.76 1.30 -173.36 -0.22 -10.98 16 10 C 0.10 2.00 4.37 -3.49 -0.02 1.98 16 11 C 0.18 3.90 2.61 -66.84 -0.17 3.72 16 12 H 0.11 2.63 6.19 -51.93 -0.32 2.31 16 13 C -0.13 -2.51 5.56 -26.53 -0.15 -2.66 16 14 C -0.15 -2.58 3.25 -26.72 -0.09 -2.67 16 15 C -0.12 -2.21 5.58 -26.54 -0.15 -2.36 16 16 C 0.15 3.02 3.61 -66.85 -0.24 2.78 16 17 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 18 C 0.10 1.88 5.88 -3.49 -0.02 1.86 16 19 N -0.58 -13.03 2.52 -155.42 -0.39 -13.42 16 20 C -0.25 -6.26 9.70 -15.06 -0.15 -6.41 16 21 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 22 C 0.01 0.21 4.98 -17.43 -0.09 0.12 16 23 N -0.90 -23.33 10.73 55.49 0.60 -22.73 16 24 Si 0.90 20.46 29.59 -169.99 -5.03 15.43 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.18 2.89 6.79 -82.17 -0.56 2.33 16 29 C -0.12 -1.83 7.97 36.01 0.29 -1.54 16 30 N -0.49 -7.52 10.17 -5.42 -0.06 -7.57 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.08 1.25 5.58 -51.93 -0.29 0.96 16 38 H 0.09 2.00 7.44 -51.93 -0.39 1.61 16 39 H 0.06 1.09 5.70 -51.93 -0.30 0.79 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.58 0.92 -52.43 -0.05 1.53 16 43 H 0.04 0.65 6.40 -51.93 -0.33 0.32 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.44 7.01 -51.93 -0.36 1.07 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 49 H 0.10 1.39 5.45 -51.92 -0.28 1.11 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 51 H 0.08 1.35 5.59 -51.93 -0.29 1.06 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -28.34 371.59 -9.60 -37.94 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.64 Total: 6.73 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.54 Total: 0.33 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.08 Total: -54.71 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.34 -9.60 -37.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039784592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.782 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds