Wall clock time and date at job start Wed Apr 1 2020 01:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38145 * 119.55049 * 2 1 4 4 C 1.39816 * 119.00371 * 179.97438 * 3 2 1 5 5 C 1.48144 * 120.92378 * 179.97438 * 4 3 2 6 6 O 1.21517 * 119.99871 * 331.79839 * 5 4 3 7 7 N 1.34773 * 120.00019 * 151.81059 * 5 4 3 8 8 C 1.48188 * 127.80183 * 183.34245 * 7 5 4 9 9 C 1.54509 * 104.63170 * 140.73290 * 8 7 5 10 10 C 1.53841 * 104.79513 * 23.79716 * 9 8 7 11 11 C 1.48256 * 127.80206 * 3.38149 * 7 5 4 12 12 C 1.52476 * 110.21760 * 240.96690 * 10 9 8 13 13 C 1.53122 * 109.65968 * 178.09022 * 12 10 9 14 14 C 1.52749 * 109.36429 * 60.35861 * 13 12 10 15 15 N 1.46934 * 109.08536 * 305.08857 * 14 13 12 16 16 C 1.36941 * 120.67294 * 234.05437 * 15 14 13 17 17 H 1.07995 * 119.99853 * 30.80265 * 16 15 14 18 18 C 1.38817 * 119.99637 * 211.07841 * 16 15 14 19 19 N 1.31617 * 119.99925 * 10.31401 * 18 16 15 20 20 Si 1.86797 * 119.99896 * 190.31255 * 18 16 15 21 21 H 1.48507 * 109.47200 * 89.99757 * 20 18 16 22 22 H 1.48495 * 109.47116 * 210.00238 * 20 18 16 23 23 H 1.48507 * 109.47054 * 330.00103 * 20 18 16 24 24 C 1.47022 * 118.64699 * 53.78063 * 15 14 13 25 25 C 1.39817 * 118.15138 * 0.25787 * 4 3 2 26 26 C 1.38153 * 119.00170 * 359.47445 * 25 4 3 27 27 C 1.50705 * 119.55251 * 180.27166 * 26 25 4 28 28 N 1.31812 * 119.54974 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46580 * 90.00037 * 1 2 3 30 30 H 1.09002 * 109.46910 * 209.99670 * 1 2 3 31 31 H 1.08998 * 109.47307 * 329.99814 * 1 2 3 32 32 H 1.08006 * 120.49845 * 359.97438 * 3 2 1 33 33 H 1.08999 * 110.40420 * 21.94607 * 8 7 5 34 34 H 1.08993 * 110.40540 * 259.51959 * 8 7 5 35 35 H 1.09005 * 110.37282 * 264.97531 * 9 8 7 36 36 H 1.08997 * 110.47147 * 142.67957 * 9 8 7 37 37 H 1.08999 * 110.42593 * 100.36408 * 11 7 5 38 38 H 1.09003 * 110.42476 * 337.88197 * 11 7 5 39 39 H 1.08999 * 109.44083 * 298.14128 * 12 10 9 40 40 H 1.09001 * 109.44309 * 58.02959 * 12 10 9 41 41 H 1.08993 * 109.49978 * 180.43489 * 13 12 10 42 42 H 1.09000 * 109.49634 * 300.53815 * 13 12 10 43 43 H 1.09006 * 109.49797 * 185.18142 * 14 13 12 44 44 H 1.09003 * 109.41817 * 64.94676 * 14 13 12 45 45 H 0.97004 * 119.99859 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.57903 * 67.33163 * 24 15 14 47 47 H 1.09006 * 109.57232 * 187.58222 * 24 15 14 48 48 H 1.08004 * 120.50005 * 179.72390 * 25 4 3 49 49 H 1.08999 * 109.46799 * 270.26068 * 27 26 25 50 50 H 1.09000 * 109.46641 * 30.26360 * 27 26 25 51 51 H 1.08999 * 109.46838 * 150.26083 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1884 0.0005 5 6 4.3599 2.4519 0.0000 6 8 3.8862 3.4540 -0.4982 7 7 5.5889 2.4900 0.5518 8 6 6.4789 3.6647 0.7070 9 6 7.1247 3.4838 2.0990 10 6 7.0433 1.9728 2.3765 11 6 6.3562 1.3660 1.1399 12 6 6.2078 1.7106 3.6247 13 6 6.0954 0.2020 3.8619 14 6 7.4915 -0.3846 4.0615 15 7 8.3325 -0.0254 2.9114 16 6 8.9930 -0.9914 2.2002 17 1 8.5706 -1.9815 2.1128 18 6 10.2084 -0.6996 1.5963 19 7 10.8249 0.4305 1.8703 20 14 10.9690 -1.9109 0.3948 21 1 10.4959 -1.6078 -0.9799 22 1 12.4486 -1.7957 0.4457 23 1 10.5671 -3.2922 0.7633 24 6 8.4455 1.3916 2.5361 25 6 4.2344 -0.0506 -0.0045 26 6 3.4740 -1.2041 0.0013 27 6 4.1595 -2.5462 0.0022 28 7 2.1572 -1.1467 0.0005 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6492 2.1376 -0.0004 33 1 5.8996 4.5874 0.6739 34 1 7.2438 3.6671 -0.0694 35 1 6.5650 4.0385 2.8520 36 1 8.1643 3.8111 2.0823 37 1 7.1003 1.0017 0.4317 38 1 5.6842 0.5601 1.4353 39 1 6.6851 2.1785 4.4857 40 1 5.2115 2.1318 3.4896 41 1 5.4914 0.0174 4.7501 42 1 5.6259 -0.2681 2.9978 43 1 7.4226 -1.4698 4.1387 44 1 7.9281 0.0212 4.9740 45 1 11.6740 0.6346 1.4481 46 1 8.9793 1.9345 3.3160 47 1 8.9880 1.4778 1.5945 48 1 5.3130 -0.1051 -0.0087 49 1 4.3251 -2.8702 -1.0252 50 1 5.1172 -2.4646 0.5164 51 1 3.5320 -3.2743 0.5163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040225842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:22 Heat of formation + Delta-G solvation = 25.201386 kcal Electronic energy + Delta-G solvation = -31998.231414 eV Core-core repulsion = 28090.933499 eV Total energy + Delta-G solvation = -3907.297914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.90339 -39.74604 -38.28840 -35.80799 -33.89841 -33.20166 -33.00413 -31.38657 -30.10031 -29.18558 -29.00719 -26.80532 -26.07008 -25.40443 -24.26192 -22.51276 -22.14196 -21.97931 -20.40141 -19.27349 -18.32351 -17.25670 -16.86466 -16.32283 -16.09953 -15.58572 -15.41283 -14.83735 -14.72037 -14.24303 -14.12505 -14.04467 -13.76314 -13.41996 -13.33707 -13.24855 -13.04165 -12.80905 -12.56655 -12.50678 -12.39735 -12.16190 -11.98698 -11.82484 -11.76710 -11.54164 -11.11375 -11.03258 -10.89954 -10.80783 -10.47859 -10.39956 -10.21588 -10.19497 -9.90787 -9.81016 -9.58055 -9.49677 -9.37919 -8.83683 -8.60037 -8.52261 -6.70788 -5.88009 -3.35537 0.76449 1.00291 2.82873 3.00313 3.30081 3.38060 3.38956 3.70257 4.07433 4.35701 4.39856 4.59361 4.83909 4.93410 4.97204 5.01310 5.14033 5.28416 5.32859 5.37847 5.41487 5.44548 5.46260 5.52864 5.56715 5.57733 5.61975 5.67130 5.74568 5.81950 5.85774 5.98859 6.00964 6.04253 6.05089 6.07111 6.15772 6.20920 6.28001 6.30711 6.41437 6.57783 6.58912 6.62719 6.73661 6.83849 6.92924 7.21926 7.54724 7.63969 7.70436 7.89545 8.14920 8.37426 9.13011 9.74106 10.33119 11.20174 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.004298 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.351193 B = 6513.158477 C = 7516.981706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.124 3.876 3 C -0.129 4.129 4 C -0.071 4.071 5 C 0.576 3.424 6 O -0.545 6.545 7 N -0.611 5.611 8 C 0.108 3.892 9 C -0.124 4.124 10 C -0.094 4.094 11 C 0.105 3.895 12 C -0.094 4.094 13 C -0.137 4.137 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.007 3.993 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.189 3.811 25 C -0.153 4.153 26 C 0.134 3.866 27 C -0.107 4.107 28 N -0.474 5.474 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.255 0.745 46 H 0.023 0.977 47 H 0.092 0.908 48 H 0.154 0.846 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 1.236 -0.958 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.014 4.014 3 C -0.150 4.150 4 C -0.081 4.081 5 C 0.365 3.635 6 O -0.424 6.424 7 N -0.343 5.343 8 C -0.014 4.014 9 C -0.163 4.163 10 C -0.096 4.096 11 C -0.017 4.017 12 C -0.132 4.132 13 C -0.176 4.176 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.083 0.917 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.063 3.937 25 C -0.173 4.173 26 C -0.004 4.004 27 C -0.164 4.164 28 N -0.186 5.186 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.110 0.890 48 H 0.172 0.828 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.611 1.035 -1.320 14.707 hybrid contribution 1.098 0.275 -0.579 1.272 sum -13.513 1.310 -1.899 13.708 Atomic orbital electron populations 1.20698 0.88449 1.03527 1.03147 1.21199 0.97059 0.87729 0.95364 1.21961 0.92994 0.99842 1.00183 1.20260 0.94249 0.93521 1.00116 1.17753 0.79889 0.87591 0.78283 1.90752 1.69562 1.35642 1.46422 1.49056 1.14898 1.12687 1.57645 1.22376 0.92378 0.88846 0.97783 1.22566 1.01544 0.96708 0.95507 1.21882 1.00395 0.93617 0.93755 1.23037 0.94624 0.88873 0.95133 1.21351 0.98105 0.96554 0.97149 1.22029 0.99586 0.95785 1.00235 1.20830 0.89245 0.97607 0.90487 1.44015 1.54200 1.02841 1.30286 1.19164 0.99411 0.93330 1.26397 0.91703 1.25139 0.95707 0.97410 1.00902 1.69949 1.16346 1.24157 1.44308 0.86333 0.78533 0.80974 0.81188 1.21392 1.21687 1.20355 1.20800 0.88143 0.83583 1.01210 1.22700 1.02678 0.91831 1.00081 1.21279 0.88963 0.95876 0.94271 1.20780 1.00411 0.91836 1.03375 1.67220 1.09779 1.29429 1.12131 0.90359 0.90341 0.90622 0.84071 0.90419 0.90816 0.91494 0.89716 0.89718 0.89156 0.92298 0.93825 0.93120 0.92539 0.92875 0.96512 0.93529 0.95894 0.89028 0.82815 0.90237 0.89702 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.17 36.01 0.37 -0.53 16 2 C 0.12 1.57 6.78 -82.63 -0.56 1.01 16 3 C -0.13 -1.76 9.32 -39.03 -0.36 -2.12 16 4 C -0.07 -1.07 5.75 -104.65 -0.60 -1.68 16 5 C 0.58 9.71 7.72 -12.19 -0.09 9.61 16 6 O -0.54 -10.43 17.05 5.35 0.09 -10.34 16 7 N -0.61 -9.73 3.32 -170.39 -0.57 -10.30 16 8 C 0.11 1.59 7.05 -2.32 -0.02 1.57 16 9 C -0.12 -1.81 6.29 -25.50 -0.16 -1.97 16 10 C -0.09 -1.56 0.68 -154.04 -0.11 -1.66 16 11 C 0.10 1.71 4.04 -2.59 -0.01 1.70 16 12 C -0.09 -1.48 4.48 -26.94 -0.12 -1.60 16 13 C -0.14 -2.20 5.87 -26.80 -0.16 -2.36 16 14 C 0.14 2.77 6.47 -3.93 -0.03 2.74 16 15 N -0.59 -13.13 2.82 -172.84 -0.49 -13.61 16 16 C -0.25 -6.25 9.59 -15.06 -0.14 -6.39 16 17 H 0.07 1.58 7.85 -52.49 -0.41 1.17 16 18 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 19 N -0.90 -24.18 11.05 55.49 0.61 -23.57 16 20 Si 0.90 20.27 29.57 -169.99 -5.03 15.24 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.19 3.94 3.61 -3.95 -0.01 3.93 16 25 C -0.15 -2.20 7.64 -39.02 -0.30 -2.50 16 26 C 0.13 1.83 6.78 -82.63 -0.56 1.27 16 27 C -0.11 -1.21 10.16 36.01 0.37 -0.84 16 28 N -0.47 -6.59 10.16 -5.78 -0.06 -6.65 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.14 1.76 7.97 -52.48 -0.42 1.34 16 33 H 0.08 1.11 7.91 -51.93 -0.41 0.69 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 36 H 0.08 1.22 7.70 -51.93 -0.40 0.82 16 37 H 0.08 1.53 7.68 -51.93 -0.40 1.13 16 38 H 0.09 1.46 3.03 -51.93 -0.16 1.30 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 43 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.16 5.97 -51.93 -0.31 1.85 16 48 H 0.15 2.23 5.23 -52.48 -0.27 1.95 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -29.10 393.81 -10.21 -39.30 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.12 Total: 3.71 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.59 Total: 0.29 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.50 Total: -54.13 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.10 -10.21 -39.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040225842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.502 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds